RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 SAFB2Q14151 953 aaKnown RBP eCLIP16.29■□□□□ 0.2
SHOX2-205ENST00000490689 NBPF1Q3BBV0 1214 aa16.29■□□□□ 0.2
SHOX2-205ENST00000490689 MSNP26038 577 aaKnown RBP16.28■□□□□ 0.2
SHOX2-205ENST00000490689 MAPK8IP3Q9UPT6 1336 aa16.28■□□□□ 0.2
SHOX2-205ENST00000490689 U2AF1L5P0DN76 240 aaPredicted RBP16.28■□□□□ 0.2
SHOX2-205ENST00000490689 U2AF1Q01081 240 aaKnown RBP eCLIP16.28■□□□□ 0.2
SHOX2-205ENST00000490689 FYCO1Q9BQS8 1478 aa16.28■□□□□ 0.2
SHOX2-205ENST00000490689 PMFBP1Q8TBY8 1022 aa16.27■□□□□ 0.2
SHOX2-205ENST00000490689 PLCB2Q00722 1185 aa16.27■□□□□ 0.19
SHOX2-205ENST00000490689 POGKQ9P215 609 aa16.26■□□□□ 0.19
SHOX2-205ENST00000490689 PTPRKQ15262 1439 aa16.26■□□□□ 0.19
SHOX2-205ENST00000490689 APBB1O00213 710 aa16.26■□□□□ 0.19
SHOX2-205ENST00000490689 BCAR3O75815 825 aa16.26■□□□□ 0.19
SHOX2-205ENST00000490689 NCOA1Q15788 1441 aa16.25■□□□□ 0.19
SHOX2-205ENST00000490689 AQRO60306 1485 aaKnown RBP eCLIP16.25■□□□□ 0.195e-13■□□□□ 10.6
SHOX2-205ENST00000490689 FANCD2Q9BXW9 1451 aa16.24■□□□□ 0.19
SHOX2-205ENST00000490689 GBP4Q96PP9 640 aa16.23■□□□□ 0.19
SHOX2-205ENST00000490689 PCF11O94913 1555 aaKnown RBP16.23■□□□□ 0.19
SHOX2-205ENST00000490689 SMC4Q9NTJ3 1288 aa16.23■□□□□ 0.19
SHOX2-205ENST00000490689 CGNL1Q0VF96 1302 aa16.21■□□□□ 0.19
SHOX2-205ENST00000490689 E9PSI1 815 aa16.21■□□□□ 0.19
SHOX2-205ENST00000490689 STAG3Q9UJ98 1225 aa16.21■□□□□ 0.19
SHOX2-205ENST00000490689 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.2■□□□□ 0.18
SHOX2-205ENST00000490689 CCDC144AA2RUR9 1427 aa16.2■□□□□ 0.18
SHOX2-205ENST00000490689 NCAPD3P42695 1498 aa16.2■□□□□ 0.18
SHOX2-205ENST00000490689 FAM43AQ8N2R8 423 aa16.19■□□□□ 0.18
SHOX2-205ENST00000490689 ANKRD30BQ9BXX2 1392 aa16.18■□□□□ 0.18
SHOX2-205ENST00000490689 FOXD4L5Q5VV16 416 aaPredicted RBP16.16■□□□□ 0.18
SHOX2-205ENST00000490689 FOXD4L4Q8WXT5 416 aaPredicted RBP16.16■□□□□ 0.18
SHOX2-205ENST00000490689 PPP2R1AP30153 589 aa16.15■□□□□ 0.18
SHOX2-205ENST00000490689 CHMP5Q9NZZ3 219 aa16.15■□□□□ 0.18
SHOX2-205ENST00000490689 TRAK2O60296 914 aa16.14■□□□□ 0.17
SHOX2-205ENST00000490689 ANKRD50Q9ULJ7 1429 aa16.14■□□□□ 0.17
SHOX2-205ENST00000490689 DDX49Q9Y6V7 483 aaKnown RBP16.13■□□□□ 0.17
SHOX2-205ENST00000490689 C22orf23Q9BZE7 217 aa16.13■□□□□ 0.17
SHOX2-205ENST00000490689 DDX11L8A8MPP1 907 aa16.12■□□□□ 0.17
SHOX2-205ENST00000490689 ELL2O00472 640 aaPredicted RBP16.12■□□□□ 0.17
SHOX2-205ENST00000490689 MAP3K1Q13233 1512 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 STK26Q9P289 416 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 PDS5BQ9NTI5 1447 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 SRPK2P78362 688 aaKnown RBP16.11■□□□□ 0.17
SHOX2-205ENST00000490689 CALD1Q05682 793 aaKnown RBP16.11■□□□□ 0.17
SHOX2-205ENST00000490689 CASC1Q6TDU7 716 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 GAPVD1Q14C86 1478 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 PTPN23Q9H3S7 1636 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 PDZRN3Q9UPQ7 1066 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 TRAK1Q9UPV9 953 aa16.11■□□□□ 0.17
SHOX2-205ENST00000490689 NUTM2DQ5VT03 806 aaPredicted RBP16.1■□□□□ 0.17
SHOX2-205ENST00000490689 IPO8O15397 1037 aaKnown RBP16.09■□□□□ 0.17
SHOX2-205ENST00000490689 NOL8Q76FK4 1167 aaKnown RBP16.09■□□□□ 0.17
SHOX2-205ENST00000490689 LNPKQ9C0E8 428 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 PEG3Q9GZU2 1588 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 KIAA1107Q9UPP5 1409 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 HMGXB3Q12766 1538 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 ANKRD45Q5TZF3 282 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 ZKSCAN2Q63HK3 967 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 FAM13BQ9NYF5 915 aa16.09■□□□□ 0.17
SHOX2-205ENST00000490689 FOXD4L6Q3SYB3 417 aaPredicted RBP16.08■□□□□ 0.17
SHOX2-205ENST00000490689 FOXD4L3Q6VB84 417 aaPredicted RBP16.08■□□□□ 0.17
SHOX2-205ENST00000490689 MIA2Q96PC5 1412 aa16.08■□□□□ 0.16
SHOX2-205ENST00000490689 PKNOX2Q96KN3 472 aa16.08■□□□□ 0.16
SHOX2-205ENST00000490689 JPH4Q96JJ6 628 aa16.07■□□□□ 0.16
SHOX2-205ENST00000490689 MRE11P49959 708 aa16.06■□□□□ 0.16
SHOX2-205ENST00000490689 DZIP1LQ8IYY4 767 aaKnown RBP16.05■□□□□ 0.16
SHOX2-205ENST00000490689 DAPK1P53355 1430 aa16.04■□□□□ 0.16
SHOX2-205ENST00000490689 EFCAB5A4FU69 1503 aa16.04■□□□□ 0.16
SHOX2-205ENST00000490689 AMER1Q5JTC6 1135 aaPredicted RBP16.04■□□□□ 0.16
SHOX2-205ENST00000490689 RPRD2Q5VT52 1461 aaKnown RBP16.04■□□□□ 0.16
SHOX2-205ENST00000490689 CDK13Q14004 1512 aaKnown RBP16.04■□□□□ 0.16
SHOX2-205ENST00000490689 MCM4P33991 863 aa16.04■□□□□ 0.16
SHOX2-205ENST00000490689 TCP11L2Q8N4U5 519 aa16.03■□□□□ 0.16
SHOX2-205ENST00000490689 KIF3BO15066 747 aa16.03■□□□□ 0.16
SHOX2-205ENST00000490689 EHBP1L1Q8N3D4 1523 aa16.03■□□□□ 0.16
SHOX2-205ENST00000490689 PLEKHG5O94827 1062 aa16.02■□□□□ 0.15
SHOX2-205ENST00000490689 IGHDP01880 384 aa16.02■□□□□ 0.15
SHOX2-205ENST00000490689 DUSP27Q5VZP5 1158 aa16.02■□□□□ 0.15
SHOX2-205ENST00000490689 SOX12O15370 315 aa16.01■□□□□ 0.15
SHOX2-205ENST00000490689 SLFN5Q08AF3 891 aa16.01■□□□□ 0.15
SHOX2-205ENST00000490689 GGT6Q6P531 493 aa16.01■□□□□ 0.15
SHOX2-205ENST00000490689 UBE2Q2Q8WVN8 375 aa16.01■□□□□ 0.15
SHOX2-205ENST00000490689 RBM10P98175 930 aaKnown RBP16.01■□□□□ 0.15
SHOX2-205ENST00000490689 CARMIL2Q6F5E8 1435 aa16.01■□□□□ 0.15
SHOX2-205ENST00000490689 C8orf34Q49A92 452 aa16.01■□□□□ 0.15
SHOX2-205ENST00000490689 PRG4Q92954 1404 aaPredicted RBP16■□□□□ 0.15
SHOX2-205ENST00000490689 WASHC2CQ9Y4E1 1318 aa16■□□□□ 0.15
SHOX2-205ENST00000490689 PLPPR3Q6T4P5 718 aa16■□□□□ 0.15
SHOX2-205ENST00000490689 CHMP4BQ9H444 224 aaKnown RBP16■□□□□ 0.15
SHOX2-205ENST00000490689 PDE3AQ14432 1141 aa16■□□□□ 0.15
SHOX2-205ENST00000490689 SUPT6HQ7KZ85 1726 aaKnown RBP15.99■□□□□ 0.15
SHOX2-205ENST00000490689 POLA1P09884 1462 aaPredicted RBP15.99■□□□□ 0.15
SHOX2-205ENST00000490689 DHX29Q7Z478 1369 aaKnown RBP15.99■□□□□ 0.15
SHOX2-205ENST00000490689 PANK2Q9BZ23 570 aa15.99■□□□□ 0.15
SHOX2-205ENST00000490689 TBC1D2Q9BYX2 928 aa15.98■□□□□ 0.15
SHOX2-205ENST00000490689 TSR2Q969E8 191 aaKnown RBP15.98■□□□□ 0.15
SHOX2-205ENST00000490689 GRPEL1Q9HAV7 217 aa15.98■□□□□ 0.15
SHOX2-205ENST00000490689 R3HCC1Q9Y3T6 440 aaKnown RBP15.98■□□□□ 0.15
SHOX2-205ENST00000490689 ESPNB1AK53 854 aa15.98■□□□□ 0.15
SHOX2-205ENST00000490689 PTMSP20962 102 aa15.98■□□□□ 0.15
SHOX2-205ENST00000490689 NESP48681 1621 aa15.98■□□□□ 0.15
SHOX2-205ENST00000490689 SKOR2Q2VWA4 1001 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms