RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 EPAS1Q99814 870 aa10.24□□□□□ -0.77
XRN1-213ENST00000489241 HCSTQ9UBK5 93 aa10.22□□□□□ -0.77
XRN1-213ENST00000489241 SPDYE16A6NNV3 312 aaPredicted RBP10.21□□□□□ -0.77
XRN1-213ENST00000489241 ARIH1Q9Y4X5 557 aaPredicted RBP10.21□□□□□ -0.77
XRN1-213ENST00000489241 DDX12PQ92771 950 aa10.2□□□□□ -0.78
XRN1-213ENST00000489241 KCTD12Q96CX2 325 aaKnown RBP10.2□□□□□ -0.78
XRN1-213ENST00000489241 BHMG1C9JSJ3 638 aaPredicted RBP10.19□□□□□ -0.78
XRN1-213ENST00000489241 HAP1P54257 671 aaPredicted RBP10.19□□□□□ -0.78
XRN1-213ENST00000489241 NBPF3Q9H094 633 aa10.18□□□□□ -0.78
XRN1-213ENST00000489241 COL9A1P20849 921 aa10.17□□□□□ -0.78
XRN1-213ENST00000489241 NBR1Q14596 966 aa10.16□□□□□ -0.78
XRN1-213ENST00000489241 C6orf132Q5T0Z8 1188 aa10.16□□□□□ -0.78
XRN1-213ENST00000489241 MRPL50Q8N5N7 158 aaKnown RBP10.16□□□□□ -0.78
XRN1-213ENST00000489241 PROX2Q3B8N5 592 aa10.15□□□□□ -0.78
XRN1-213ENST00000489241 RABGEF1Q9UJ41 708 aa10.15□□□□□ -0.78
XRN1-213ENST00000489241 EN1Q05925 392 aaPredicted RBP10.14□□□□□ -0.79
XRN1-213ENST00000489241 RBM33Q96EV2 1170 aaKnown RBP10.14□□□□□ -0.79
XRN1-213ENST00000489241 TSHZ2Q9NRE2 1034 aa10.14□□□□□ -0.79
XRN1-213ENST00000489241 GOLGA8CPA6NN73 597 aa10.13□□□□□ -0.79
XRN1-213ENST00000489241 MAP3K7O43318 606 aa10.12□□□□□ -0.79
XRN1-213ENST00000489241 ONECUT3O60422 494 aaPredicted RBP10.1□□□□□ -0.79
XRN1-213ENST00000489241 THSD4Q6ZMP0 1018 aa10.1□□□□□ -0.79
XRN1-213ENST00000489241 WNT2BQ93097 391 aa10.1□□□□□ -0.79
XRN1-213ENST00000489241 TSR1Q2NL82 804 aaKnown RBP10.09□□□□□ -0.79
XRN1-213ENST00000489241 GRXCR2A6NFK2 248 aa10.08□□□□□ -0.8
XRN1-213ENST00000489241 TRIM6-TRIM34B2RNG4 842 aa10.08□□□□□ -0.8
XRN1-213ENST00000489241 PLA2G2EQ9NZK7 142 aa10.08□□□□□ -0.8
XRN1-213ENST00000489241 PTPN5P54829 565 aa10.07□□□□□ -0.8
XRN1-213ENST00000489241 LAPTM4BQ86VI4 370 aa10.07□□□□□ -0.8
XRN1-213ENST00000489241 KIAA1468Q9P260 1216 aa10.07□□□□□ -0.8
XRN1-213ENST00000489241 VSIG10Q8N0Z9 540 aa10.06□□□□□ -0.8
XRN1-213ENST00000489241 ANKK1Q8NFD2 765 aa10.05□□□□□ -0.8
XRN1-213ENST00000489241 PRIM1P49642 420 aaKnown RBP10.04□□□□□ -0.8
XRN1-213ENST00000489241 KCNV2Q8TDN2 545 aa10.04□□□□□ -0.8
XRN1-213ENST00000489241 CERKQ8TCT0 537 aa10.03□□□□□ -0.8
XRN1-213ENST00000489241 ARHGEF1Q92888 912 aaKnown RBP10.03□□□□□ -0.8
XRN1-213ENST00000489241 SEPT9Q9UHD8 586 aaPredicted RBP10.03□□□□□ -0.8
XRN1-213ENST00000489241 OSBPP22059 807 aa10.02□□□□□ -0.81
XRN1-213ENST00000489241 FAM98CQ17RN3 349 aaKnown RBP10.01□□□□□ -0.81
XRN1-213ENST00000489241 ZFRQ96KR1 1074 aaKnown RBP10.01□□□□□ -0.81
XRN1-213ENST00000489241 PACS2Q86VP3 889 aa10□□□□□ -0.81
XRN1-213ENST00000489241 TSKSQ9UJT2 592 aa10□□□□□ -0.81
XRN1-213ENST00000489241 SOWAHBA6NEL2 793 aa9.99□□□□□ -0.81
XRN1-213ENST00000489241 PRSS12P56730 875 aa9.99□□□□□ -0.81
XRN1-213ENST00000489241 P3H3Q8IVL6 736 aa9.99□□□□□ -0.81
XRN1-213ENST00000489241 CDCA7LQ96GN5 454 aa9.99□□□□□ -0.81
XRN1-213ENST00000489241 CDHR5Q9HBB8 845 aa9.99□□□□□ -0.81
XRN1-213ENST00000489241 BCAMP50895 628 aa9.98□□□□□ -0.81
XRN1-213ENST00000489241 RBM27Q9P2N5 1060 aaKnown RBP9.97□□□□□ -0.81
XRN1-213ENST00000489241 NBPF26B4DH59 902 aa9.95□□□□□ -0.82
XRN1-213ENST00000489241 NYAP1Q6ZVC0 841 aa9.94□□□□□ -0.82
XRN1-213ENST00000489241 LRCH3Q96II8 777 aa9.94□□□□□ -0.82
XRN1-213ENST00000489241 FAM198AQ9UFP1 575 aa9.94□□□□□ -0.82
XRN1-213ENST00000489241 MLLT3P42568 568 aaPredicted RBP9.93□□□□□ -0.82
XRN1-213ENST00000489241 IFFO2Q5TF58 517 aa9.93□□□□□ -0.82
XRN1-213ENST00000489241 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.93□□□□□ -0.82
XRN1-213ENST00000489241 SMAPO00193 183 aa9.91□□□□□ -0.82
XRN1-213ENST00000489241 PNMA3Q9UL41 463 aa9.91□□□□□ -0.82
XRN1-213ENST00000489241 KDM2AQ9Y2K7 1162 aa9.91□□□□□ -0.82
XRN1-213ENST00000489241 TATDN2Q93075 761 aa9.9□□□□□ -0.82
XRN1-213ENST00000489241 NPDC1Q9NQX5 325 aaPredicted RBP9.9□□□□□ -0.82
XRN1-213ENST00000489241 WBP1LQ9NX94 342 aa9.9□□□□□ -0.82
XRN1-213ENST00000489241 TSR3Q9UJK0 312 aaKnown RBP9.9□□□□□ -0.82
XRN1-213ENST00000489241 HPS5Q9UPZ3 1129 aa9.89□□□□□ -0.83
XRN1-213ENST00000489241 C3orf80F5H4A9 247 aa9.88□□□□□ -0.83
XRN1-213ENST00000489241 PADI6Q6TGC4 694 aa9.88□□□□□ -0.83
XRN1-213ENST00000489241 TTC13Q8NBP0 860 aa9.88□□□□□ -0.83
XRN1-213ENST00000489241 ITGBL1O95965 494 aaPredicted RBP9.87□□□□□ -0.83
XRN1-213ENST00000489241 NUDT18Q6ZVK8 323 aa9.87□□□□□ -0.83
XRN1-213ENST00000489241 SAMD7Q7Z3H4 446 aa9.86□□□□□ -0.83
XRN1-213ENST00000489241 A0A0G2JS52 829 aa9.84□□□□□ -0.83
XRN1-213ENST00000489241 SEMA3EO15041 775 aa9.83□□□□□ -0.84
XRN1-213ENST00000489241 PPP4CP60510 307 aa9.83□□□□□ -0.84
XRN1-213ENST00000489241 PTGDRQ13258 359 aa9.83□□□□□ -0.84
XRN1-213ENST00000489241 HDGFP51858 240 aaKnown RBP9.8□□□□□ -0.84
XRN1-213ENST00000489241 NUTM2FA1L443 756 aa9.79□□□□□ -0.84
XRN1-213ENST00000489241 RNF40O75150 1001 aa9.79□□□□□ -0.84
XRN1-213ENST00000489241 RGS20O76081 388 aa9.79□□□□□ -0.84
XRN1-213ENST00000489241 KCNC4Q03721 635 aa9.79□□□□□ -0.84
XRN1-213ENST00000489241 NECTIN2Q92692 538 aa9.78□□□□□ -0.84
XRN1-213ENST00000489241 TESPA1A2RU30 521 aaPredicted RBP9.77□□□□□ -0.85
XRN1-213ENST00000489241 FCHSD2O94868 740 aa9.77□□□□□ -0.85
XRN1-213ENST00000489241 EYA1Q99502 592 aa9.77□□□□□ -0.85
XRN1-213ENST00000489241 SWT1Q5T5J6 900 aaKnown RBP9.76□□□□□ -0.85
XRN1-213ENST00000489241 SLF2Q8IX21 1173 aa9.76□□□□□ -0.85
XRN1-213ENST00000489241 SLC4A3P48751 1232 aa9.75□□□□□ -0.85
XRN1-213ENST00000489241 SMYD5Q6GMV2 418 aa9.75□□□□□ -0.85
XRN1-213ENST00000489241 BCANQ96GW7 911 aa9.75□□□□□ -0.85
XRN1-213ENST00000489241 RBM46Q8TBY0 533 aaKnown RBP9.74□□□□□ -0.85
XRN1-213ENST00000489241 DNAJB2P25686 324 aa9.73□□□□□ -0.85
XRN1-213ENST00000489241 ADGRG1Q9Y653 693 aa9.73□□□□□ -0.85
XRN1-213ENST00000489241 APLP1P51693 650 aa9.71□□□□□ -0.86
XRN1-213ENST00000489241 TJAP1Q5JTD0 557 aa9.71□□□□□ -0.86
XRN1-213ENST00000489241 MTRQ99707 1265 aa9.71□□□□□ -0.86
XRN1-213ENST00000489241 HIC1Q14526 733 aa9.7□□□□□ -0.86
XRN1-213ENST00000489241 RBM26Q5T8P6 1007 aaKnown RBP9.7□□□□□ -0.86
XRN1-213ENST00000489241 IL21Q9HBE4 155 aa9.7□□□□□ -0.86
XRN1-213ENST00000489241 TMEM134Q9H6X4 195 aa9.69□□□□□ -0.86
XRN1-213ENST00000489241 RCCD1A6NED2 376 aa9.67□□□□□ -0.86
XRN1-213ENST00000489241 FAM161AQ3B820 660 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms