RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 ADAM33Q9BZ11 813 aa12.24□□□□□ -0.45
USP48-209ENST00000487880 CDHR5Q9HBB8 845 aa12.24□□□□□ -0.45
USP48-209ENST00000487880 TSR1Q2NL82 804 aaKnown RBP12.23□□□□□ -0.45
USP48-209ENST00000487880 FCHSD2O94868 740 aa12.22□□□□□ -0.45
USP48-209ENST00000487880 NPDC1Q9NQX5 325 aaPredicted RBP12.22□□□□□ -0.45
USP48-209ENST00000487880 HIC1Q14526 733 aa12.2□□□□□ -0.46
USP48-209ENST00000487880 C6orf132Q5T0Z8 1188 aa12.2□□□□□ -0.46
USP48-209ENST00000487880 BCL2L12Q9HB09 334 aa12.2□□□□□ -0.46
USP48-209ENST00000487880 MARVELD3Q96A59 401 aa12.19□□□□□ -0.46
USP48-209ENST00000487880 GNPATO15228 680 aa12.18□□□□□ -0.46
USP48-209ENST00000487880 EMP3P54852 163 aa12.17□□□□□ -0.46
USP48-209ENST00000487880 ERBB3P21860 1342 aa12.15□□□□□ -0.46
USP48-209ENST00000487880 FECHP22830 423 aa12.14□□□□□ -0.47
USP48-209ENST00000487880 VARS2Q5ST30 1063 aaKnown RBP12.14□□□□□ -0.47
USP48-209ENST00000487880 CERKQ8TCT0 537 aa12.14□□□□□ -0.47
USP48-209ENST00000487880 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
USP48-209ENST00000487880 MAP2K5Q13163 448 aa12.12□□□□□ -0.47
USP48-209ENST00000487880 COL9A1P20849 921 aa12.11□□□□□ -0.47
USP48-209ENST00000487880 PTPREP23469 700 aa12.11□□□□□ -0.47
USP48-209ENST00000487880 MINK1Q8N4C8 1332 aaPredicted RBP12.11□□□□□ -0.47
USP48-209ENST00000487880 PPP1R3GB7ZBB8 358 aa12.1□□□□□ -0.47
USP48-209ENST00000487880 RBM27Q9P2N5 1060 aaKnown RBP12.1□□□□□ -0.47
USP48-209ENST00000487880 POTEB3A0JP26 581 aa12.09□□□□□ -0.47
USP48-209ENST00000487880 POTEBQ6S5H4 581 aa12.09□□□□□ -0.47
USP48-209ENST00000487880 TTC13Q8NBP0 860 aa12.09□□□□□ -0.47
USP48-209ENST00000487880 FAM205CA6NFA0 338 aa12.08□□□□□ -0.48
USP48-209ENST00000487880 IRF6O14896 467 aa12.08□□□□□ -0.48
USP48-209ENST00000487880 POTEEQ6S8J3 1075 aa12.08□□□□□ -0.48
USP48-209ENST00000487880 KRI1Q8N9T8 703 aaKnown RBP12.08□□□□□ -0.48
USP48-209ENST00000487880 AK7Q96M32 723 aa12.08□□□□□ -0.48
USP48-209ENST00000487880 KCNK17Q96T54 332 aa12.07□□□□□ -0.48
USP48-209ENST00000487880 PRSS12P56730 875 aa12.06□□□□□ -0.48
USP48-209ENST00000487880 ZNF687Q8N1G0 1237 aa12.06□□□□□ -0.48
USP48-209ENST00000487880 HS3ST6Q96QI5 342 aa12.06□□□□□ -0.48
USP48-209ENST00000487880 PADI6Q6TGC4 694 aa12.05□□□□□ -0.48
USP48-209ENST00000487880 CCDC102AQ96A19 550 aa12.05□□□□□ -0.48
USP48-209ENST00000487880 PBX2P40425 430 aa12.04□□□□□ -0.48
USP48-209ENST00000487880 CDCA7LQ96GN5 454 aa12.04□□□□□ -0.48
USP48-209ENST00000487880 ARHGAP33O14559 1287 aa12.03□□□□□ -0.48
USP48-209ENST00000487880 TRIM66O15016 1216 aa12.02□□□□□ -0.49
USP48-209ENST00000487880 PSEN2P49810 448 aa12.02□□□□□ -0.49
USP48-209ENST00000487880 FAM198AQ9UFP1 575 aa12.02□□□□□ -0.49
USP48-209ENST00000487880 KCNH8Q96L42 1107 aa12.01□□□□□ -0.49
USP48-209ENST00000487880 ZBED2Q9BTP6 218 aa12□□□□□ -0.49
USP48-209ENST00000487880 TSKSQ9UJT2 592 aa12□□□□□ -0.49
USP48-209ENST00000487880 ADGRG1Q9Y653 693 aa12□□□□□ -0.49
USP48-209ENST00000487880 TRIM6-TRIM34B2RNG4 842 aa11.99□□□□□ -0.49
USP48-209ENST00000487880 SPNS2Q8IVW8 549 aa11.99□□□□□ -0.49
USP48-209ENST00000487880 SLC4A5Q9BY07 1137 aa11.99□□□□□ -0.49
USP48-209ENST00000487880 AXIN2Q9Y2T1 843 aa11.99□□□□□ -0.49
USP48-209ENST00000487880 BRPF1P55201 1214 aaPredicted RBP11.98□□□□□ -0.49
USP48-209ENST00000487880 DMRTA1Q5VZB9 504 aa11.98□□□□□ -0.49
USP48-209ENST00000487880 ONECUT3O60422 494 aaPredicted RBP11.97□□□□□ -0.49
USP48-209ENST00000487880 AMHR2Q16671 573 aa11.97□□□□□ -0.49
USP48-209ENST00000487880 PROX2Q3B8N5 592 aa11.97□□□□□ -0.49
USP48-209ENST00000487880 MMRN1Q13201 1228 aa11.96□□□□□ -0.49
USP48-209ENST00000487880 FAM161AQ3B820 660 aa11.96□□□□□ -0.49
USP48-209ENST00000487880 METTL3Q86U44 580 aaKnown RBP11.96□□□□□ -0.49
USP48-209ENST00000487880 OATP04181 439 aa11.95□□□□□ -0.5
USP48-209ENST00000487880 PHOX2BQ99453 314 aa11.95□□□□□ -0.5
USP48-209ENST00000487880 C3orf80F5H4A9 247 aa11.94□□□□□ -0.5
USP48-209ENST00000487880 PDE4DQ08499 809 aa11.94□□□□□ -0.5
USP48-209ENST00000487880 PXYLP1Q8TE99 480 aa11.94□□□□□ -0.5
USP48-209ENST00000487880 PACS2Q86VP3 889 aa11.92□□□□□ -0.5
USP48-209ENST00000487880 EYA1Q99502 592 aa11.92□□□□□ -0.5
USP48-209ENST00000487880 KRTAP3-3Q9BYR6 98 aa11.92□□□□□ -0.5
USP48-209ENST00000487880 KRTAP3-2Q9BYR7 98 aa11.92□□□□□ -0.5
USP48-209ENST00000487880 NBPF26B4DH59 902 aa11.91□□□□□ -0.5
USP48-209ENST00000487880 VPS9D1Q9Y2B5 631 aa11.91□□□□□ -0.5
USP48-209ENST00000487880 NEUROD2Q15784 382 aa11.9□□□□□ -0.5
USP48-209ENST00000487880 RBM46Q8TBY0 533 aaKnown RBP11.9□□□□□ -0.5
USP48-209ENST00000487880 RABGEF1Q9UJ41 708 aa11.9□□□□□ -0.5
USP48-209ENST00000487880 TK2O00142 265 aa11.89□□□□□ -0.51
USP48-209ENST00000487880 LSM11P83369 360 aaKnown RBP eCLIP11.89□□□□□ -0.51
USP48-209ENST00000487880 TATDN2Q93075 761 aa11.89□□□□□ -0.51
USP48-209ENST00000487880 KIAA1468Q9P260 1216 aa11.89□□□□□ -0.51
USP48-209ENST00000487880 NUDT18Q6ZVK8 323 aa11.88□□□□□ -0.51
USP48-209ENST00000487880 PARP9Q8IXQ6 854 aa11.88□□□□□ -0.51
USP48-209ENST00000487880 TMUB1Q9BVT8 246 aa11.88□□□□□ -0.51
USP48-209ENST00000487880 GPBP1L1Q9HC44 474 aaPredicted RBP11.87□□□□□ -0.51
USP48-209ENST00000487880 PNMA3Q9UL41 463 aa11.86□□□□□ -0.51
USP48-209ENST00000487880 KDM4CQ9H3R0 1056 aa11.85□□□□□ -0.51
USP48-209ENST00000487880 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.84□□□□□ -0.51
USP48-209ENST00000487880 BHMG1C9JSJ3 638 aaPredicted RBP11.84□□□□□ -0.51
USP48-209ENST00000487880 REPIN1Q9BWE0 567 aaKnown RBP11.84□□□□□ -0.51
USP48-209ENST00000487880 RCCD1A6NED2 376 aa11.83□□□□□ -0.52
USP48-209ENST00000487880 CLCN1P35523 988 aa11.83□□□□□ -0.52
USP48-209ENST00000487880 MDM2Q00987 491 aaPredicted RBP11.83□□□□□ -0.52
USP48-209ENST00000487880 TTLL12Q14166 644 aaPredicted RBP11.83□□□□□ -0.52
USP48-209ENST00000487880 ADGRD1Q6QNK2 874 aa11.83□□□□□ -0.52
USP48-209ENST00000487880 NLRP7Q8WX94 980 aa11.83□□□□□ -0.52
USP48-209ENST00000487880 SMAPO00193 183 aa11.82□□□□□ -0.52
USP48-209ENST00000487880 GPCPD1Q9NPB8 672 aa11.82□□□□□ -0.52
USP48-209ENST00000487880 HRO43593 1189 aa11.81□□□□□ -0.52
USP48-209ENST00000487880 DNAJB2P25686 324 aa11.81□□□□□ -0.52
USP48-209ENST00000487880 GIGYF2Q6Y7W6 1299 aaKnown RBP11.81□□□□□ -0.52
USP48-209ENST00000487880 TMEM134Q9H6X4 195 aa11.8□□□□□ -0.52
USP48-209ENST00000487880 SEPT9Q9UHD8 586 aaPredicted RBP11.8□□□□□ -0.52
USP48-209ENST00000487880 FAM98CQ17RN3 349 aaKnown RBP11.79□□□□□ -0.52
USP48-209ENST00000487880 LAPTM4BQ86VI4 370 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms