RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 RBM33Q96EV2 1170 aaKnown RBP10.45□□□□□ -0.74
VPS41-213ENST00000485955 PTPREP23469 700 aa10.44□□□□□ -0.74
VPS41-213ENST00000485955 MLLT3P42568 568 aaPredicted RBP10.44□□□□□ -0.74
VPS41-213ENST00000485955 OSBPP22059 807 aa10.43□□□□□ -0.74
VPS41-213ENST00000485955 C6orf132Q5T0Z8 1188 aa10.43□□□□□ -0.74
VPS41-213ENST00000485955 SEMA3EO15041 775 aa10.42□□□□□ -0.74
VPS41-213ENST00000485955 COL9A1P20849 921 aa10.42□□□□□ -0.74
VPS41-213ENST00000485955 EN1Q05925 392 aaPredicted RBP10.41□□□□□ -0.74
VPS41-213ENST00000485955 MMRN1Q13201 1228 aa10.41□□□□□ -0.74
VPS41-213ENST00000485955 ADGRD1Q6QNK2 874 aa10.41□□□□□ -0.74
VPS41-213ENST00000485955 TSR1Q2NL82 804 aaKnown RBP10.4□□□□□ -0.74
VPS41-213ENST00000485955 KCNH8Q96L42 1107 aa10.4□□□□□ -0.74
VPS41-213ENST00000485955 VPS9D1Q9Y2B5 631 aa10.39□□□□□ -0.75
VPS41-213ENST00000485955 TK2O00142 265 aa10.38□□□□□ -0.75
VPS41-213ENST00000485955 MAP3K7O43318 606 aa10.38□□□□□ -0.75
VPS41-213ENST00000485955 ZBED2Q9BTP6 218 aa10.38□□□□□ -0.75
VPS41-213ENST00000485955 HRO43593 1189 aa10.37□□□□□ -0.75
VPS41-213ENST00000485955 PPP1R3GB7ZBB8 358 aa10.36□□□□□ -0.75
VPS41-213ENST00000485955 SLC4A5Q9BY07 1137 aa10.36□□□□□ -0.75
VPS41-213ENST00000485955 PROX2Q3B8N5 592 aa10.35□□□□□ -0.75
VPS41-213ENST00000485955 MYT1LQ9UL68 1186 aa10.34□□□□□ -0.75
VPS41-213ENST00000485955 TESPA1A2RU30 521 aaPredicted RBP10.33□□□□□ -0.76
VPS41-213ENST00000485955 CDHR5Q9HBB8 845 aa10.33□□□□□ -0.76
VPS41-213ENST00000485955 BHMG1C9JSJ3 638 aaPredicted RBP10.32□□□□□ -0.76
VPS41-213ENST00000485955 NPDC1Q9NQX5 325 aaPredicted RBP10.3□□□□□ -0.76
VPS41-213ENST00000485955 RNF166Q96A37 237 aaPredicted RBP10.27□□□□□ -0.77
VPS41-213ENST00000485955 KIAA1468Q9P260 1216 aa10.27□□□□□ -0.77
VPS41-213ENST00000485955 TSKSQ9UJT2 592 aa10.27□□□□□ -0.77
VPS41-213ENST00000485955 RBM26Q5T8P6 1007 aaKnown RBP10.26□□□□□ -0.77
VPS41-213ENST00000485955 RABGEF1Q9UJ41 708 aa10.26□□□□□ -0.77
VPS41-213ENST00000485955 TRIM6-TRIM34B2RNG4 842 aa10.25□□□□□ -0.77
VPS41-213ENST00000485955 PRSS12P56730 875 aa10.25□□□□□ -0.77
VPS41-213ENST00000485955 CDCA7LQ96GN5 454 aa10.25□□□□□ -0.77
VPS41-213ENST00000485955 FAM198AQ9UFP1 575 aa10.25□□□□□ -0.77
VPS41-213ENST00000485955 STAC3Q96MF2 364 aa10.24□□□□□ -0.77
VPS41-213ENST00000485955 C3orf80F5H4A9 247 aa10.23□□□□□ -0.77
VPS41-213ENST00000485955 ONECUT3O60422 494 aaPredicted RBP10.23□□□□□ -0.77
VPS41-213ENST00000485955 CERKQ8TCT0 537 aa10.23□□□□□ -0.77
VPS41-213ENST00000485955 NUTM2FA1L443 756 aa10.22□□□□□ -0.77
VPS41-213ENST00000485955 PTGDRQ13258 359 aa10.22□□□□□ -0.77
VPS41-213ENST00000485955 MRPL50Q8N5N7 158 aaKnown RBP10.22□□□□□ -0.77
VPS41-213ENST00000485955 SMYD5Q6GMV2 418 aa10.21□□□□□ -0.77
VPS41-213ENST00000485955 KCTD12Q96CX2 325 aaKnown RBP10.2□□□□□ -0.78
VPS41-213ENST00000485955 NBPF3Q9H094 633 aa10.2□□□□□ -0.78
VPS41-213ENST00000485955 SEPT9Q9UHD8 586 aaPredicted RBP10.2□□□□□ -0.78
VPS41-213ENST00000485955 SLC24A1O60721 1099 aa10.19□□□□□ -0.78
VPS41-213ENST00000485955 PACS2Q86VP3 889 aa10.19□□□□□ -0.78
VPS41-213ENST00000485955 PADI6Q6TGC4 694 aa10.18□□□□□ -0.78
VPS41-213ENST00000485955 TTC13Q8NBP0 860 aa10.18□□□□□ -0.78
VPS41-213ENST00000485955 SMAPO00193 183 aa10.17□□□□□ -0.78
VPS41-213ENST00000485955 TATDN2Q93075 761 aa10.16□□□□□ -0.78
VPS41-213ENST00000485955 RBM27Q9P2N5 1060 aaKnown RBP10.16□□□□□ -0.78
VPS41-213ENST00000485955 GOLGA8CPA6NN73 597 aa10.15□□□□□ -0.78
VPS41-213ENST00000485955 LAPTM4BQ86VI4 370 aa10.15□□□□□ -0.78
VPS41-213ENST00000485955 WNT2BQ93097 391 aa10.15□□□□□ -0.78
VPS41-213ENST00000485955 GPR37O15354 613 aa10.14□□□□□ -0.79
VPS41-213ENST00000485955 FCHSD2O94868 740 aa10.14□□□□□ -0.79
VPS41-213ENST00000485955 NUDT18Q6ZVK8 323 aa10.14□□□□□ -0.79
VPS41-213ENST00000485955 ZFRQ96KR1 1074 aaKnown RBP10.14□□□□□ -0.79
VPS41-213ENST00000485955 FAM98CQ17RN3 349 aaKnown RBP10.13□□□□□ -0.79
VPS41-213ENST00000485955 PNMA3Q9UL41 463 aa10.13□□□□□ -0.79
VPS41-213ENST00000485955 FECHP22830 423 aa10.12□□□□□ -0.79
VPS41-213ENST00000485955 PTPN5P54829 565 aa10.11□□□□□ -0.79
VPS41-213ENST00000485955 FAM161AQ3B820 660 aa10.11□□□□□ -0.79
VPS41-213ENST00000485955 THSD4Q6ZMP0 1018 aa10.11□□□□□ -0.79
VPS41-213ENST00000485955 NBPF26B4DH59 902 aa10.1□□□□□ -0.79
VPS41-213ENST00000485955 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.1□□□□□ -0.79
VPS41-213ENST00000485955 BCAMP50895 628 aa10.09□□□□□ -0.79
VPS41-213ENST00000485955 HIC1Q14526 733 aa10.09□□□□□ -0.79
VPS41-213ENST00000485955 EYA1Q99502 592 aa10.09□□□□□ -0.79
VPS41-213ENST00000485955 HCSTQ9UBK5 93 aa10.09□□□□□ -0.79
VPS41-213ENST00000485955 GPIHBP1Q8IV16 184 aa10.08□□□□□ -0.8
VPS41-213ENST00000485955 ANKK1Q8NFD2 765 aa10.08□□□□□ -0.8
VPS41-213ENST00000485955 SOWAHBA6NEL2 793 aa10.07□□□□□ -0.8
VPS41-213ENST00000485955 ADGRG1Q9Y653 693 aa10.07□□□□□ -0.8
VPS41-213ENST00000485955 GNPATO15228 680 aa10.06□□□□□ -0.8
VPS41-213ENST00000485955 SAMD7Q7Z3H4 446 aa10.06□□□□□ -0.8
VPS41-213ENST00000485955 TULP1O00294 542 aaPredicted RBP10.05□□□□□ -0.8
VPS41-213ENST00000485955 LMOD2Q6P5Q4 547 aa10.03□□□□□ -0.8
VPS41-213ENST00000485955 LRCH3Q96II8 777 aa10.03□□□□□ -0.8
VPS41-213ENST00000485955 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.03□□□□□ -0.8
VPS41-213ENST00000485955 WBP1LQ9NX94 342 aa10.02□□□□□ -0.81
VPS41-213ENST00000485955 SWT1Q5T5J6 900 aaKnown RBP10□□□□□ -0.81
VPS41-213ENST00000485955 RBM46Q8TBY0 533 aaKnown RBP10□□□□□ -0.81
VPS41-213ENST00000485955 PXYLP1Q8TE99 480 aa10□□□□□ -0.81
VPS41-213ENST00000485955 HPS5Q9UPZ3 1129 aa10□□□□□ -0.81
VPS41-213ENST00000485955 RCCD1A6NED2 376 aa9.98□□□□□ -0.81
VPS41-213ENST00000485955 METTL3Q86U44 580 aaKnown RBP9.98□□□□□ -0.81
VPS41-213ENST00000485955 TSR3Q9UJK0 312 aaKnown RBP9.98□□□□□ -0.81
VPS41-213ENST00000485955 OATP04181 439 aa9.97□□□□□ -0.81
VPS41-213ENST00000485955 HDGFP51858 240 aaKnown RBP9.97□□□□□ -0.81
VPS41-213ENST00000485955 PHOX2BQ99453 314 aa9.97□□□□□ -0.81
VPS41-213ENST00000485955 DNAJB2P25686 324 aa9.96□□□□□ -0.82
VPS41-213ENST00000485955 TMEM134Q9H6X4 195 aa9.96□□□□□ -0.82
VPS41-213ENST00000485955 RNF40O75150 1001 aa9.95□□□□□ -0.82
VPS41-213ENST00000485955 PPP4CP60510 307 aa9.95□□□□□ -0.82
VPS41-213ENST00000485955 NLRP7Q8WX94 980 aa9.95□□□□□ -0.82
VPS41-213ENST00000485955 ZC3H15Q8WU90 426 aaKnown RBP9.94□□□□□ -0.82
VPS41-213ENST00000485955 IRF6O14896 467 aa9.93□□□□□ -0.82
VPS41-213ENST00000485955 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms