RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 PCDHGA10Q9Y5H3 936 aa10.09□□□□□ -0.79
VPS13A-211ENST00000484581 PHF14O94880 888 aa10.08□□□□□ -0.8
VPS13A-211ENST00000484581 CAMK2BQ13554 666 aa10.08□□□□□ -0.8
VPS13A-211ENST00000484581 TYW1BQ6NUM6 668 aa10.08□□□□□ -0.8
VPS13A-211ENST00000484581 MRPL50Q8N5N7 158 aaKnown RBP10.08□□□□□ -0.8
VPS13A-211ENST00000484581 FBXW7Q969H0 707 aa10.08□□□□□ -0.8
VPS13A-211ENST00000484581 DPYSL4O14531 572 aa10.07□□□□□ -0.8
VPS13A-211ENST00000484581 NBPF3Q9H094 633 aa10.06□□□□□ -0.8
VPS13A-211ENST00000484581 WNT2BQ93097 391 aa10.05□□□□□ -0.8
VPS13A-211ENST00000484581 PPP1R3GB7ZBB8 358 aa10.04□□□□□ -0.8
VPS13A-211ENST00000484581 CFAP44Q96MT7 982 aa10.04□□□□□ -0.8
VPS13A-211ENST00000484581 EPAS1Q99814 870 aa10.04□□□□□ -0.8
VPS13A-211ENST00000484581 PAXIP1Q6ZW49 1069 aaPredicted RBP10.03□□□□□ -0.8
VPS13A-211ENST00000484581 COL9A1P20849 921 aa10□□□□□ -0.81
VPS13A-211ENST00000484581 VSIG10Q8N0Z9 540 aa10□□□□□ -0.81
VPS13A-211ENST00000484581 BCANQ96GW7 911 aa10□□□□□ -0.81
VPS13A-211ENST00000484581 WDR70Q9NW82 654 aa10□□□□□ -0.81
VPS13A-211ENST00000484581 RABGEF1Q9UJ41 708 aa10□□□□□ -0.81
VPS13A-211ENST00000484581 PROX2Q3B8N5 592 aa9.99□□□□□ -0.81
VPS13A-211ENST00000484581 C6orf132Q5T0Z8 1188 aa9.99□□□□□ -0.81
VPS13A-211ENST00000484581 DDX12PQ92771 950 aa9.99□□□□□ -0.81
VPS13A-211ENST00000484581 RBM33Q96EV2 1170 aaKnown RBP9.99□□□□□ -0.81
VPS13A-211ENST00000484581 E2F4Q16254 413 aa9.96□□□□□ -0.82
VPS13A-211ENST00000484581 KIAA1468Q9P260 1216 aa9.96□□□□□ -0.82
VPS13A-211ENST00000484581 SPDYE16A6NNV3 312 aaPredicted RBP9.95□□□□□ -0.82
VPS13A-211ENST00000484581 ANKK1Q8NFD2 765 aa9.95□□□□□ -0.82
VPS13A-211ENST00000484581 ONECUT3O60422 494 aaPredicted RBP9.94□□□□□ -0.82
VPS13A-211ENST00000484581 ITGBL1O95965 494 aaPredicted RBP9.93□□□□□ -0.82
VPS13A-211ENST00000484581 NBR1Q14596 966 aa9.93□□□□□ -0.82
VPS13A-211ENST00000484581 PDIA6Q15084 440 aa9.93□□□□□ -0.82
VPS13A-211ENST00000484581 LAPTM4BQ86VI4 370 aa9.93□□□□□ -0.82
VPS13A-211ENST00000484581 MAP3K7O43318 606 aa9.92□□□□□ -0.82
VPS13A-211ENST00000484581 TRIM6-TRIM34B2RNG4 842 aa9.89□□□□□ -0.83
VPS13A-211ENST00000484581 EN1Q05925 392 aaPredicted RBP9.89□□□□□ -0.83
VPS13A-211ENST00000484581 Q6ZNB5 142 aa9.88□□□□□ -0.83
VPS13A-211ENST00000484581 ZFRQ96KR1 1074 aaKnown RBP9.88□□□□□ -0.83
VPS13A-211ENST00000484581 SEPT9Q9UHD8 586 aaPredicted RBP9.88□□□□□ -0.83
VPS13A-211ENST00000484581 GRXCR2A6NFK2 248 aa9.87□□□□□ -0.83
VPS13A-211ENST00000484581 PACS2Q86VP3 889 aa9.87□□□□□ -0.83
VPS13A-211ENST00000484581 SOWAHBA6NEL2 793 aa9.86□□□□□ -0.83
VPS13A-211ENST00000484581 BCAMP50895 628 aa9.86□□□□□ -0.83
VPS13A-211ENST00000484581 TSR1Q2NL82 804 aaKnown RBP9.86□□□□□ -0.83
VPS13A-211ENST00000484581 ARIH1Q9Y4X5 557 aaPredicted RBP9.86□□□□□ -0.83
VPS13A-211ENST00000484581 FAM98CQ17RN3 349 aaKnown RBP9.85□□□□□ -0.83
VPS13A-211ENST00000484581 NYAP1Q6ZVC0 841 aa9.83□□□□□ -0.84
VPS13A-211ENST00000484581 CERKQ8TCT0 537 aa9.82□□□□□ -0.84
VPS13A-211ENST00000484581 LRCH3Q96II8 777 aa9.82□□□□□ -0.84
VPS13A-211ENST00000484581 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.81□□□□□ -0.84
VPS13A-211ENST00000484581 PRSS12P56730 875 aa9.8□□□□□ -0.84
VPS13A-211ENST00000484581 CDCA7LQ96GN5 454 aa9.8□□□□□ -0.84
VPS13A-211ENST00000484581 WBP1LQ9NX94 342 aa9.8□□□□□ -0.84
VPS13A-211ENST00000484581 TSKSQ9UJT2 592 aa9.8□□□□□ -0.84
VPS13A-211ENST00000484581 KDM2AQ9Y2K7 1162 aa9.8□□□□□ -0.84
VPS13A-211ENST00000484581 KCNC4Q03721 635 aa9.79□□□□□ -0.84
VPS13A-211ENST00000484581 TSR3Q9UJK0 312 aaKnown RBP9.79□□□□□ -0.84
VPS13A-211ENST00000484581 PRKCSHP14314 528 aaPredicted RBP9.78□□□□□ -0.84
VPS13A-211ENST00000484581 OSBPP22059 807 aa9.77□□□□□ -0.85
VPS13A-211ENST00000484581 HPS5Q9UPZ3 1129 aa9.77□□□□□ -0.85
VPS13A-211ENST00000484581 PRIM1P49642 420 aaKnown RBP9.76□□□□□ -0.85
VPS13A-211ENST00000484581 TSHZ2Q9NRE2 1034 aa9.76□□□□□ -0.85
VPS13A-211ENST00000484581 SMAPO00193 183 aa9.75□□□□□ -0.85
VPS13A-211ENST00000484581 PPP4CP60510 307 aa9.75□□□□□ -0.85
VPS13A-211ENST00000484581 NBPF26B4DH59 902 aa9.74□□□□□ -0.85
VPS13A-211ENST00000484581 LCE2BO14633 110 aa9.74□□□□□ -0.85
VPS13A-211ENST00000484581 LAPTM4AQ15012 233 aa9.74□□□□□ -0.85
VPS13A-211ENST00000484581 PNMA3Q9UL41 463 aa9.74□□□□□ -0.85
VPS13A-211ENST00000484581 HDGFP51858 240 aaKnown RBP9.73□□□□□ -0.85
VPS13A-211ENST00000484581 TATDN2Q93075 761 aa9.73□□□□□ -0.85
VPS13A-211ENST00000484581 FAM198AQ9UFP1 575 aa9.72□□□□□ -0.85
VPS13A-211ENST00000484581 SAMD7Q7Z3H4 446 aa9.71□□□□□ -0.86
VPS13A-211ENST00000484581 ARHGEF1Q92888 912 aaKnown RBP9.71□□□□□ -0.86
VPS13A-211ENST00000484581 CDHR5Q9HBB8 845 aa9.71□□□□□ -0.86
VPS13A-211ENST00000484581 NUDT18Q6ZVK8 323 aa9.69□□□□□ -0.86
VPS13A-211ENST00000484581 RBM27Q9P2N5 1060 aaKnown RBP9.69□□□□□ -0.86
VPS13A-211ENST00000484581 GFRA3O60609 400 aa9.68□□□□□ -0.86
VPS13A-211ENST00000484581 TPRNQ4KMQ1 711 aa9.68□□□□□ -0.86
VPS13A-211ENST00000484581 TRAF7Q6Q0C0 670 aa9.68□□□□□ -0.86
VPS13A-211ENST00000484581 C3orf80F5H4A9 247 aa9.66□□□□□ -0.86
VPS13A-211ENST00000484581 RNF40O75150 1001 aa9.66□□□□□ -0.86
VPS13A-211ENST00000484581 NPDC1Q9NQX5 325 aaPredicted RBP9.65□□□□□ -0.86
VPS13A-211ENST00000484581 MLLT3P42568 568 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-211ENST00000484581 PADI6Q6TGC4 694 aa9.64□□□□□ -0.87
VPS13A-211ENST00000484581 KCNV2Q8TDN2 545 aa9.64□□□□□ -0.87
VPS13A-211ENST00000484581 TTC13Q8NBP0 860 aa9.63□□□□□ -0.87
VPS13A-211ENST00000484581 SLC4A3P48751 1232 aa9.62□□□□□ -0.87
VPS13A-211ENST00000484581 NRG2O14511 850 aaPredicted RBP9.61□□□□□ -0.87
VPS13A-211ENST00000484581 NECTIN2Q92692 538 aa9.61□□□□□ -0.87
VPS13A-211ENST00000484581 P3H3Q8IVL6 736 aa9.6□□□□□ -0.87
VPS13A-211ENST00000484581 SLF2Q8IX21 1173 aa9.6□□□□□ -0.87
VPS13A-211ENST00000484581 PRKD2Q9BZL6 878 aa9.6□□□□□ -0.87
VPS13A-211ENST00000484581 TJAP1Q5JTD0 557 aa9.59□□□□□ -0.87
VPS13A-211ENST00000484581 IL21Q9HBE4 155 aa9.59□□□□□ -0.87
VPS13A-211ENST00000484581 SWT1Q5T5J6 900 aaKnown RBP9.58□□□□□ -0.88
VPS13A-211ENST00000484581 MTRQ99707 1265 aa9.58□□□□□ -0.88
VPS13A-211ENST00000484581 NUTM2FA1L443 756 aa9.57□□□□□ -0.88
VPS13A-211ENST00000484581 EYA1Q99502 592 aa9.57□□□□□ -0.88
VPS13A-211ENST00000484581 APLP1P51693 650 aa9.55□□□□□ -0.88
VPS13A-211ENST00000484581 PTGDRQ13258 359 aa9.55□□□□□ -0.88
VPS13A-211ENST00000484581 V9GY48 417 aaPredicted RBP9.55□□□□□ -0.88
VPS13A-211ENST00000484581 PPP1R18Q6NYC8 613 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms