RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 MS4A1P11836 297 aa16.53■□□□□ 0.24
VPS52-218ENST00000482399 SPATA31E1Q6ZUB1 1445 aa16.52■□□□□ 0.24
VPS52-218ENST00000482399 FRAT2O75474 233 aaPredicted RBP16.52■□□□□ 0.24
VPS52-218ENST00000482399 TEX14Q8IWB6 1497 aa16.51■□□□□ 0.23
VPS52-218ENST00000482399 GOLGA2Q08379 1002 aa16.51■□□□□ 0.23
VPS52-218ENST00000482399 USP35Q9P2H5 1018 aa16.51■□□□□ 0.23
VPS52-218ENST00000482399 RNF123Q5XPI4 1314 aa16.5■□□□□ 0.23
VPS52-218ENST00000482399 CUL7Q14999 1698 aa16.5■□□□□ 0.23
VPS52-218ENST00000482399 APAF1O14727 1248 aa16.49■□□□□ 0.23
VPS52-218ENST00000482399 JPH4Q96JJ6 628 aa16.49■□□□□ 0.23
VPS52-218ENST00000482399 BCL2L13Q9BXK5 485 aa16.48■□□□□ 0.23
VPS52-218ENST00000482399 ROCK1Q13464 1354 aa16.48■□□□□ 0.23
VPS52-218ENST00000482399 FAM161AQ3B820 660 aa16.48■□□□□ 0.23
VPS52-218ENST00000482399 CLUAP1Q96AJ1 413 aa16.48■□□□□ 0.23
VPS52-218ENST00000482399 ARID4BQ4LE39 1312 aaPredicted RBP16.48■□□□□ 0.23
VPS52-218ENST00000482399 CTTNBP2Q8WZ74 1663 aa16.47■□□□□ 0.23
VPS52-218ENST00000482399 RRP7AQ9Y3A4 280 aaKnown RBP16.47■□□□□ 0.23
VPS52-218ENST00000482399 GZF1Q9H116 711 aaPredicted RBP16.47■□□□□ 0.23
VPS52-218ENST00000482399 HECW1Q76N89 1606 aa16.47■□□□□ 0.23
VPS52-218ENST00000482399 CCDC144AA2RUR9 1427 aa16.46■□□□□ 0.23
VPS52-218ENST00000482399 BCAR3O75815 825 aa16.46■□□□□ 0.23
VPS52-218ENST00000482399 CENPQQ7L2Z9 268 aaPredicted RBP16.45■□□□□ 0.22
VPS52-218ENST00000482399 COG6Q9Y2V7 657 aa16.45■□□□□ 0.22
VPS52-218ENST00000482399 UPF2Q9HAU5 1272 aaKnown RBP16.45■□□□□ 0.22
VPS52-218ENST00000482399 TCOF1Q13428 1488 aaKnown RBP16.44■□□□□ 0.22
VPS52-218ENST00000482399 PLB1Q6P1J6 1458 aa16.42■□□□□ 0.22
VPS52-218ENST00000482399 PZPP20742 1482 aa16.41■□□□□ 0.22
VPS52-218ENST00000482399 PANK1Q8TE04 598 aa16.41■□□□□ 0.22
VPS52-218ENST00000482399 CAMSAP2Q08AD1 1489 aa16.4■□□□□ 0.22
VPS52-218ENST00000482399 IQGAP2Q13576 1575 aa16.4■□□□□ 0.22
VPS52-218ENST00000482399 BECN1Q14457 450 aa16.39■□□□□ 0.21
VPS52-218ENST00000482399 PPP2R1AP30153 589 aa16.39■□□□□ 0.21
VPS52-218ENST00000482399 TROQ12816 1431 aaPredicted RBP16.38■□□□□ 0.21
VPS52-218ENST00000482399 DISP3Q9P2K9 1392 aa16.38■□□□□ 0.21
VPS52-218ENST00000482399 C9orf84Q5VXU9 1444 aa16.38■□□□□ 0.21
VPS52-218ENST00000482399 LRPPRCP42704 1394 aaKnown RBP16.37■□□□□ 0.21
VPS52-218ENST00000482399 PER1O15534 1290 aaPredicted RBP16.36■□□□□ 0.21
VPS52-218ENST00000482399 SAMD9Q5K651 1589 aa16.36■□□□□ 0.21
VPS52-218ENST00000482399 LAMC3Q9Y6N6 1575 aa16.35■□□□□ 0.21
VPS52-218ENST00000482399 NUP153P49790 1475 aaKnown RBP16.34■□□□□ 0.21
VPS52-218ENST00000482399 DUSP27Q5VZP5 1158 aa16.34■□□□□ 0.21
VPS52-218ENST00000482399 ZNF608Q9ULD9 1512 aaPredicted RBP16.34■□□□□ 0.21
VPS52-218ENST00000482399 LRRIQ1Q96JM4 1722 aa16.34■□□□□ 0.21
VPS52-218ENST00000482399 POGKQ9P215 609 aa16.33■□□□□ 0.2
VPS52-218ENST00000482399 BCORL1Q5H9F3 1711 aa16.33■□□□□ 0.2
VPS52-218ENST00000482399 CDCA8Q53HL2 280 aa16.32■□□□□ 0.2
VPS52-218ENST00000482399 CARMIL2Q6F5E8 1435 aa16.32■□□□□ 0.2
VPS52-218ENST00000482399 GCC2Q8IWJ2 1684 aa16.32■□□□□ 0.2
VPS52-218ENST00000482399 GPATCH8Q9UKJ3 1502 aaKnown RBP16.32■□□□□ 0.2
VPS52-218ENST00000482399 CENPJQ9HC77 1338 aaPredicted RBP16.32■□□□□ 0.2
VPS52-218ENST00000482399 SAFB2Q14151 953 aaKnown RBP eCLIP16.32■□□□□ 0.2
VPS52-218ENST00000482399 SPINK5Q9NQ38 1064 aaPredicted RBP16.32■□□□□ 0.2
VPS52-218ENST00000482399 ARHGEF11O15085 1522 aa16.31■□□□□ 0.2
VPS52-218ENST00000482399 HSP90AA1P07900 732 aaKnown RBP16.31■□□□□ 0.2
VPS52-218ENST00000482399 C8orf34Q49A92 452 aa16.3■□□□□ 0.2
VPS52-218ENST00000482399 FTSJ3Q8IY81 847 aaKnown RBP16.3■□□□□ 0.2
VPS52-218ENST00000482399 PARD3Q8TEW0 1356 aa16.3■□□□□ 0.2
VPS52-218ENST00000482399 IGHDP01880 384 aa16.3■□□□□ 0.2
VPS52-218ENST00000482399 MFAP1P55081 439 aaKnown RBP16.3■□□□□ 0.2
VPS52-218ENST00000482399 NAP1L5Q96NT1 182 aaPredicted RBP16.29■□□□□ 0.2
VPS52-218ENST00000482399 PLEKHH1Q9ULM0 1364 aa16.29■□□□□ 0.2
VPS52-218ENST00000482399 TESK2Q96S53 571 aa16.29■□□□□ 0.2
VPS52-218ENST00000482399 MORC1Q86VD1 984 aa16.29■□□□□ 0.2
VPS52-218ENST00000482399 WDR62O43379 1518 aa16.28■□□□□ 0.2
VPS52-218ENST00000482399 RALGAPBQ86X10 1494 aa16.28■□□□□ 0.2
VPS52-218ENST00000482399 SEC24BO95487 1268 aa16.28■□□□□ 0.2
VPS52-218ENST00000482399 ERBINQ96RT1 1412 aa16.27■□□□□ 0.2
VPS52-218ENST00000482399 U2SURPO15042 1029 aaKnown RBP16.27■□□□□ 0.19
VPS52-218ENST00000482399 NUTM2DQ5VT03 806 aaPredicted RBP16.27■□□□□ 0.19
VPS52-218ENST00000482399 SLFN5Q08AF3 891 aa16.26■□□□□ 0.19
VPS52-218ENST00000482399 FOXD4L1Q9NU39 408 aa16.25■□□□□ 0.19
VPS52-218ENST00000482399 E9PSI1 815 aa16.25■□□□□ 0.19
VPS52-218ENST00000482399 DMRT2Q9Y5R5 561 aa16.25■□□□□ 0.19
VPS52-218ENST00000482399 KIAA0586Q9BVV6 1533 aa16.24■□□□□ 0.19
VPS52-218ENST00000482399 TRAK1Q9UPV9 953 aa16.24■□□□□ 0.19
VPS52-218ENST00000482399 DNMT1P26358 1616 aaKnown RBP16.24■□□□□ 0.19
VPS52-218ENST00000482399 U2AF1L5P0DN76 240 aaPredicted RBP16.24■□□□□ 0.19
VPS52-218ENST00000482399 U2AF1Q01081 240 aaKnown RBP eCLIP16.24■□□□□ 0.193e-7■■□□□ 12.8
VPS52-218ENST00000482399 CFAP70Q5T0N1 1121 aa16.24■□□□□ 0.19
VPS52-218ENST00000482399 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
VPS52-218ENST00000482399 TNNQ9UQP3 1299 aa16.23■□□□□ 0.19
VPS52-218ENST00000482399 WASHC2CQ9Y4E1 1318 aa16.23■□□□□ 0.19
VPS52-218ENST00000482399 ABCA5Q8WWZ7 1642 aa16.21■□□□□ 0.19
VPS52-218ENST00000482399 KDM2BQ8NHM5 1336 aa16.2■□□□□ 0.18
VPS52-218ENST00000482399 KIF3BO15066 747 aa16.2■□□□□ 0.18
VPS52-218ENST00000482399 CGNL1Q0VF96 1302 aa16.2■□□□□ 0.18
VPS52-218ENST00000482399 KDM5CP41229 1560 aa16.2■□□□□ 0.18
VPS52-218ENST00000482399 ITPRIPQ8IWB1 547 aa16.19■□□□□ 0.18
VPS52-218ENST00000482399 AFAP1Q8N556 730 aa16.19■□□□□ 0.18
VPS52-218ENST00000482399 PTPRGP23470 1445 aa16.18■□□□□ 0.18
VPS52-218ENST00000482399 AMER1Q5JTC6 1135 aaPredicted RBP16.18■□□□□ 0.18
VPS52-218ENST00000482399 PRAG1Q86YV5 1406 aa16.18■□□□□ 0.18
VPS52-218ENST00000482399 PDZRN3Q9UPQ7 1066 aa16.18■□□□□ 0.18
VPS52-218ENST00000482399 DISP1Q96F81 1524 aa16.17■□□□□ 0.18
VPS52-218ENST00000482399 GOLGA6L3A6NEY3 463 aa16.17■□□□□ 0.18
VPS52-218ENST00000482399 TCP11L2Q8N4U5 519 aa16.17■□□□□ 0.18
VPS52-218ENST00000482399 MAPK8IP3Q9UPT6 1336 aa16.17■□□□□ 0.18
VPS52-218ENST00000482399 UHRF1BP1Q6BDS2 1440 aa16.16■□□□□ 0.18
VPS52-218ENST00000482399 CFAP53Q96M91 514 aa16.16■□□□□ 0.18
VPS52-218ENST00000482399 RWDD1Q9H446 243 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms