RNA–Protein interactions for RNA: ENST00000481048.5

LRCH3-216, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 3

Gene LRCH3, Length 536 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-216ENST00000481048 STAC3Q96MF2 364 aa12.1□□□□□ -0.47
LRCH3-216ENST00000481048 RSF1Q96T23 1441 aaPredicted RBP12.1□□□□□ -0.47
LRCH3-216ENST00000481048 WDR62O43379 1518 aa12.09□□□□□ -0.47
LRCH3-216ENST00000481048 CFTRP13569 1480 aa12.08□□□□□ -0.48
LRCH3-216ENST00000481048 EVI5O60447 810 aa12.07□□□□□ -0.48
LRCH3-216ENST00000481048 FOSBP53539 338 aa12.07□□□□□ -0.48
LRCH3-216ENST00000481048 BCL2L12Q9HB09 334 aa12.07□□□□□ -0.48
LRCH3-216ENST00000481048 CEP164Q9UPV0 1460 aa12.07□□□□□ -0.48
LRCH3-216ENST00000481048 ANO8Q9HCE9 1232 aaPredicted RBP12.06□□□□□ -0.48
LRCH3-216ENST00000481048 TOP2AP11388 1531 aaKnown RBP12.06□□□□□ -0.48
LRCH3-216ENST00000481048 MAP3K9P80192 1104 aa12.05□□□□□ -0.48
LRCH3-216ENST00000481048 MFSD10Q14728 455 aa12.05□□□□□ -0.48
LRCH3-216ENST00000481048 VPS9D1Q9Y2B5 631 aa12.05□□□□□ -0.48
LRCH3-216ENST00000481048 FANCD2Q9BXW9 1451 aa12.05□□□□□ -0.48
LRCH3-216ENST00000481048 KCTD12Q96CX2 325 aaKnown RBP12.04□□□□□ -0.48
LRCH3-216ENST00000481048 JPH4Q96JJ6 628 aa12.03□□□□□ -0.48
LRCH3-216ENST00000481048 PLA2G2EQ9NZK7 142 aa12.03□□□□□ -0.48
LRCH3-216ENST00000481048 PTPREP23469 700 aa12.02□□□□□ -0.49
LRCH3-216ENST00000481048 CADPS2Q86UW7 1296 aa12.02□□□□□ -0.49
LRCH3-216ENST00000481048 EMILIN3Q9NT22 766 aa12.01□□□□□ -0.49
LRCH3-216ENST00000481048 ZDHHC16Q969W1 377 aa12□□□□□ -0.49
LRCH3-216ENST00000481048 PRDM2Q13029 1718 aa12□□□□□ -0.49
LRCH3-216ENST00000481048 SLC4A5Q9BY07 1137 aa11.99□□□□□ -0.49
LRCH3-216ENST00000481048 ADAM33Q9BZ11 813 aa11.98□□□□□ -0.49
LRCH3-216ENST00000481048 ZBED2Q9BTP6 218 aa11.95□□□□□ -0.5
LRCH3-216ENST00000481048 URB2Q14146 1524 aaKnown RBP11.93□□□□□ -0.5
LRCH3-216ENST00000481048 BHMG1C9JSJ3 638 aaPredicted RBP11.93□□□□□ -0.5
LRCH3-216ENST00000481048 PTPN5P54829 565 aa11.93□□□□□ -0.5
LRCH3-216ENST00000481048 CCDC88BA6NC98 1476 aa11.92□□□□□ -0.5
LRCH3-216ENST00000481048 PCDHGA10Q9Y5H3 936 aa11.92□□□□□ -0.5
LRCH3-216ENST00000481048 GOLGA8CPA6NN73 597 aa11.9□□□□□ -0.5
LRCH3-216ENST00000481048 MRPL50Q8N5N7 158 aaKnown RBP11.9□□□□□ -0.5
LRCH3-216ENST00000481048 BBXQ8WY36 941 aaPredicted RBP11.89□□□□□ -0.51
LRCH3-216ENST00000481048 ABCC8Q09428 1581 aa11.88□□□□□ -0.51
LRCH3-216ENST00000481048 CAMK2BQ13554 666 aa11.87□□□□□ -0.51
LRCH3-216ENST00000481048 PPP1R3GB7ZBB8 358 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 PHF14O94880 888 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 TYW1BQ6NUM6 668 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 THSD4Q6ZMP0 1018 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 WNT2BQ93097 391 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 FBXW7Q969H0 707 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 NBPF3Q9H094 633 aa11.86□□□□□ -0.51
LRCH3-216ENST00000481048 IFT140Q96RY7 1462 aa11.85□□□□□ -0.51
LRCH3-216ENST00000481048 DPYSL4O14531 572 aa11.84□□□□□ -0.51
LRCH3-216ENST00000481048 COL9A1P20849 921 aa11.83□□□□□ -0.52
LRCH3-216ENST00000481048 PROX2Q3B8N5 592 aa11.83□□□□□ -0.52
LRCH3-216ENST00000481048 TOPBP1Q92547 1522 aa11.82□□□□□ -0.52
LRCH3-216ENST00000481048 RABGEF1Q9UJ41 708 aa11.81□□□□□ -0.52
LRCH3-216ENST00000481048 EPAS1Q99814 870 aa11.79□□□□□ -0.52
LRCH3-216ENST00000481048 DNMBPQ6XZF7 1577 aa11.79□□□□□ -0.52
LRCH3-216ENST00000481048 SPRYD3Q8NCJ5 442 aa11.78□□□□□ -0.52
LRCH3-216ENST00000481048 ZNF608Q9ULD9 1512 aaPredicted RBP11.77□□□□□ -0.52
LRCH3-216ENST00000481048 C6orf132Q5T0Z8 1188 aa11.77□□□□□ -0.53
LRCH3-216ENST00000481048 DDX12PQ92771 950 aa11.76□□□□□ -0.53
LRCH3-216ENST00000481048 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.76□□□□□ -0.53
LRCH3-216ENST00000481048 RBM33Q96EV2 1170 aaKnown RBP11.75□□□□□ -0.53
LRCH3-216ENST00000481048 KIAA1468Q9P260 1216 aa11.75□□□□□ -0.53
LRCH3-216ENST00000481048 ANKK1Q8NFD2 765 aa11.74□□□□□ -0.53
LRCH3-216ENST00000481048 TARBP1Q13395 1621 aaKnown RBP11.72□□□□□ -0.53
LRCH3-216ENST00000481048 AMER1Q5JTC6 1135 aaPredicted RBP11.72□□□□□ -0.53
LRCH3-216ENST00000481048 EIF4G3O43432 1585 aaKnown RBP11.71□□□□□ -0.53
LRCH3-216ENST00000481048 LAPTM4BQ86VI4 370 aa11.71□□□□□ -0.53
LRCH3-216ENST00000481048 ONECUT3O60422 494 aaPredicted RBP11.7□□□□□ -0.54
LRCH3-216ENST00000481048 IFFO2Q5TF58 517 aa11.7□□□□□ -0.54
LRCH3-216ENST00000481048 POLA1P09884 1462 aaPredicted RBP11.7□□□□□ -0.54
LRCH3-216ENST00000481048 RIMBP3CA6NJZ7 1639 aa11.69□□□□□ -0.54
LRCH3-216ENST00000481048 RIMBP3BA6NNM3 1639 aa11.69□□□□□ -0.54
LRCH3-216ENST00000481048 RIMBP3Q9UFD9 1639 aa11.69□□□□□ -0.54
LRCH3-216ENST00000481048 BCAMP50895 628 aa11.69□□□□□ -0.54
LRCH3-216ENST00000481048 TRIM6-TRIM34B2RNG4 842 aa11.68□□□□□ -0.54
LRCH3-216ENST00000481048 NBR1Q14596 966 aa11.68□□□□□ -0.54
LRCH3-216ENST00000481048 PDIA6Q15084 440 aa11.68□□□□□ -0.54
LRCH3-216ENST00000481048 ZFRQ96KR1 1074 aaKnown RBP11.68□□□□□ -0.54
LRCH3-216ENST00000481048 CFAP44Q96MT7 982 aa11.68□□□□□ -0.54
LRCH3-216ENST00000481048 SEPT9Q9UHD8 586 aaPredicted RBP11.68□□□□□ -0.54
LRCH3-216ENST00000481048 AQRO60306 1485 aaKnown RBP eCLIP11.68□□□□□ -0.542e-6■□□□□ 10.1
LRCH3-216ENST00000481048 PAXIP1Q6ZW49 1069 aaPredicted RBP11.67□□□□□ -0.54
LRCH3-216ENST00000481048 SOGA1O94964 1423 aa11.67□□□□□ -0.54
LRCH3-216ENST00000481048 WDR97A6NE52 1622 aa11.67□□□□□ -0.54
LRCH3-216ENST00000481048 SOWAHBA6NEL2 793 aa11.66□□□□□ -0.54
LRCH3-216ENST00000481048 RTN4Q9NQC3 1192 aaKnown RBP11.66□□□□□ -0.54
LRCH3-216ENST00000481048 CHD1O14646 1710 aa11.66□□□□□ -0.54
LRCH3-216ENST00000481048 ARHGEF11O15085 1522 aa11.65□□□□□ -0.54
LRCH3-216ENST00000481048 SPDYE16A6NNV3 312 aaPredicted RBP11.65□□□□□ -0.54
LRCH3-216ENST00000481048 MAP3K7O43318 606 aa11.65□□□□□ -0.54
LRCH3-216ENST00000481048 EN1Q05925 392 aaPredicted RBP11.65□□□□□ -0.54
LRCH3-216ENST00000481048 E2F4Q16254 413 aa11.65□□□□□ -0.54
LRCH3-216ENST00000481048 TSR1Q2NL82 804 aaKnown RBP11.64□□□□□ -0.55
LRCH3-216ENST00000481048 WDR70Q9NW82 654 aa11.64□□□□□ -0.55
LRCH3-216ENST00000481048 RAD54L2Q9Y4B4 1467 aa11.63□□□□□ -0.55
LRCH3-216ENST00000481048 A0A0G2JS52 829 aa11.62□□□□□ -0.55
LRCH3-216ENST00000481048 FAM98CQ17RN3 349 aaKnown RBP11.62□□□□□ -0.55
LRCH3-216ENST00000481048 WBP1LQ9NX94 342 aa11.61□□□□□ -0.55
LRCH3-216ENST00000481048 TDRD9Q8NDG6 1382 aaKnown RBP11.61□□□□□ -0.55
LRCH3-216ENST00000481048 FGD5Q6ZNL6 1462 aa11.6□□□□□ -0.55
LRCH3-216ENST00000481048 RGS20O76081 388 aa11.6□□□□□ -0.55
LRCH3-216ENST00000481048 PACS2Q86VP3 889 aa11.6□□□□□ -0.55
LRCH3-216ENST00000481048 GRXCR2A6NFK2 248 aa11.59□□□□□ -0.55
LRCH3-216ENST00000481048 CYB5RLQ6IPT4 315 aa11.59□□□□□ -0.55
LRCH3-216ENST00000481048 NYAP1Q6ZVC0 841 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms