RNA–Protein interactions for RNA: ENST00000479896.1

PTPRE-208, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 5,736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-208ENST00000479896 VPS8Q8N3P4 1428 aa15.48■□□□□ 0.07
PTPRE-208ENST00000479896 CCDC18Q5T9S5 1454 aa15.48■□□□□ 0.07
PTPRE-208ENST00000479896 NUTM2FA1L443 756 aa15.48■□□□□ 0.07
PTPRE-208ENST00000479896 NOL10Q9BSC4 688 aaKnown RBP15.47■□□□□ 0.07
PTPRE-208ENST00000479896 TRIM34Q9BYJ4 488 aa15.47■□□□□ 0.07
PTPRE-208ENST00000479896 UACAQ9BZF9 1416 aa15.47■□□□□ 0.07
PTPRE-208ENST00000479896 AMOTL1Q8IY63 956 aa15.46■□□□□ 0.07
PTPRE-208ENST00000479896 CTDP1Q9Y5B0 961 aaPredicted RBP15.46■□□□□ 0.06
PTPRE-208ENST00000479896 COG3Q96JB2 828 aa15.45■□□□□ 0.06
PTPRE-208ENST00000479896 A0A0U1RQG5 324 aaPredicted RBP15.44■□□□□ 0.06
PTPRE-208ENST00000479896 MFAP1P55081 439 aaKnown RBP15.44■□□□□ 0.06
PTPRE-208ENST00000479896 CHMP4CQ96CF2 233 aa15.44■□□□□ 0.06
PTPRE-208ENST00000479896 CENPJQ9HC77 1338 aaPredicted RBP15.44■□□□□ 0.06
PTPRE-208ENST00000479896 TTC5Q8N0Z6 440 aa15.44■□□□□ 0.06
PTPRE-208ENST00000479896 TCERG1O14776 1098 aaKnown RBP15.44■□□□□ 0.06
PTPRE-208ENST00000479896 KIF16BQ96L93 1317 aa15.43■□□□□ 0.06
PTPRE-208ENST00000479896 PDE4CQ08493 712 aa15.43■□□□□ 0.06
PTPRE-208ENST00000479896 CREBRFQ8IUR6 639 aa15.43■□□□□ 0.06
PTPRE-208ENST00000479896 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.42■□□□□ 0.06
PTPRE-208ENST00000479896 TRAK1Q9UPV9 953 aa15.42■□□□□ 0.06
PTPRE-208ENST00000479896 TCEAL9Q9UHQ7 104 aa15.42■□□□□ 0.06
PTPRE-208ENST00000479896 CCDC146Q8IYE0 955 aa15.42■□□□□ 0.06
PTPRE-208ENST00000479896 AKAP17AQ02040 695 aaKnown RBP15.41■□□□□ 0.06
PTPRE-208ENST00000479896 LRRFIP1Q32MZ4 808 aaKnown RBP15.41■□□□□ 0.06
PTPRE-208ENST00000479896 RTN4Q9NQC3 1192 aaKnown RBP15.41■□□□□ 0.06
PTPRE-208ENST00000479896 PHLDB1Q86UU1 1377 aa15.41■□□□□ 0.06
PTPRE-208ENST00000479896 VGFO15240 615 aaPredicted RBP15.4■□□□□ 0.06
PTPRE-208ENST00000479896 SF3A1Q15459 793 aaKnown RBP15.4■□□□□ 0.06
PTPRE-208ENST00000479896 TPM3P06753 285 aa15.4■□□□□ 0.06
PTPRE-208ENST00000479896 TEFQ10587 303 aa15.4■□□□□ 0.06
PTPRE-208ENST00000479896 NEXNQ0ZGT2 675 aa15.39■□□□□ 0.05
PTPRE-208ENST00000479896 KANK4Q5T7N3 995 aaPredicted RBP15.39■□□□□ 0.05
PTPRE-208ENST00000479896 RAB3GAP2Q9H2M9 1393 aa15.39■□□□□ 0.05
PTPRE-208ENST00000479896 CCDC88BA6NC98 1476 aa15.39■□□□□ 0.05
PTPRE-208ENST00000479896 ST18O60284 1047 aa15.39■□□□□ 0.05
PTPRE-208ENST00000479896 SYNE3Q6ZMZ3 975 aa15.39■□□□□ 0.05
PTPRE-208ENST00000479896 EVC2Q86UK5 1308 aa15.38■□□□□ 0.05
PTPRE-208ENST00000479896 NOL8Q76FK4 1167 aaKnown RBP15.38■□□□□ 0.05
PTPRE-208ENST00000479896 USP35Q9P2H5 1018 aa15.38■□□□□ 0.05
PTPRE-208ENST00000479896 JPH4Q96JJ6 628 aa15.38■□□□□ 0.05
PTPRE-208ENST00000479896 NLRP13Q86W25 1043 aa15.38■□□□□ 0.05
PTPRE-208ENST00000479896 GOLGA6L1Q8N7Z2 621 aa15.37■□□□□ 0.05
PTPRE-208ENST00000479896 KRI1Q8N9T8 703 aaKnown RBP15.37■□□□□ 0.05
PTPRE-208ENST00000479896 CLUAP1Q96AJ1 413 aa15.37■□□□□ 0.05
PTPRE-208ENST00000479896 CCDC144AA2RUR9 1427 aa15.37■□□□□ 0.05
PTPRE-208ENST00000479896 H3BQV1 296 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 TPM2P07951 284 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 TPD52L1Q16890 204 aaPredicted RBP15.36■□□□□ 0.05
PTPRE-208ENST00000479896 IFFO2Q5TF58 517 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 PHF14O94880 888 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 SLKQ9H2G2 1235 aaPredicted RBP15.36■□□□□ 0.05
PTPRE-208ENST00000479896 CWC22Q9HCG8 908 aaKnown RBP15.36■□□□□ 0.05
PTPRE-208ENST00000479896 CGNL1Q0VF96 1302 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 RAPGEF2Q9Y4G8 1499 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 PDE3BQ13370 1112 aa15.36■□□□□ 0.05
PTPRE-208ENST00000479896 RAD21O60216 631 aa15.35■□□□□ 0.05
PTPRE-208ENST00000479896 AMER1Q5JTC6 1135 aaPredicted RBP15.35■□□□□ 0.05
PTPRE-208ENST00000479896 DCAF8L1A6NGE4 600 aa15.35■□□□□ 0.05
PTPRE-208ENST00000479896 CYB5RLQ6IPT4 315 aa15.34■□□□□ 0.05
PTPRE-208ENST00000479896 PSME1Q06323 249 aa15.34■□□□□ 0.05
PTPRE-208ENST00000479896 FAM184AQ8NB25 1140 aa15.34■□□□□ 0.05
PTPRE-208ENST00000479896 FBXW7Q969H0 707 aa15.34■□□□□ 0.05
PTPRE-208ENST00000479896 GZF1Q9H116 711 aaPredicted RBP15.34■□□□□ 0.05
PTPRE-208ENST00000479896 KIF15Q9NS87 1388 aa15.34■□□□□ 0.05
PTPRE-208ENST00000479896 SYTL4Q96C24 671 aaPredicted RBP15.33■□□□□ 0.05
PTPRE-208ENST00000479896 PES1O00541 588 aaKnown RBP15.33■□□□□ 0.04
PTPRE-208ENST00000479896 VPS37DQ86XT2 251 aa15.33■□□□□ 0.04
PTPRE-208ENST00000479896 TSR1Q2NL82 804 aaKnown RBP15.33■□□□□ 0.04
PTPRE-208ENST00000479896 FHOD3Q2V2M9 1422 aa15.33■□□□□ 0.04
PTPRE-208ENST00000479896 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.32■□□□□ 0.04
PTPRE-208ENST00000479896 L3MBTL2Q969R5 705 aa15.32■□□□□ 0.04
PTPRE-208ENST00000479896 RILPL2Q969X0 211 aa15.32■□□□□ 0.04
PTPRE-208ENST00000479896 OSCARQ8IYS5 282 aa15.32■□□□□ 0.04
PTPRE-208ENST00000479896 NGEFQ8N5V2 710 aa15.32■□□□□ 0.04
PTPRE-208ENST00000479896 CADPSQ9ULU8 1353 aa15.31■□□□□ 0.04
PTPRE-208ENST00000479896 CPLX2Q6PUV4 134 aaKnown RBP15.31■□□□□ 0.04
PTPRE-208ENST00000479896 ABCC8Q09428 1581 aa15.31■□□□□ 0.04
PTPRE-208ENST00000479896 DDX58O95786 925 aaKnown RBP15.31■□□□□ 0.04
PTPRE-208ENST00000479896 C9orf78Q9NZ63 289 aaPredicted RBP15.31■□□□□ 0.04
PTPRE-208ENST00000479896 KLHL34Q8N239 644 aa15.3■□□□□ 0.04
PTPRE-208ENST00000479896 PTPRGP23470 1445 aa15.3■□□□□ 0.04
PTPRE-208ENST00000479896 DIAPH3Q9NSV4 1193 aa15.3■□□□□ 0.04
PTPRE-208ENST00000479896 RRP7AQ9Y3A4 280 aaKnown RBP15.29■□□□□ 0.04
PTPRE-208ENST00000479896 TRIM29Q14134 588 aa15.29■□□□□ 0.04
PTPRE-208ENST00000479896 PHF23Q9BUL5 403 aaPredicted RBP15.29■□□□□ 0.04
PTPRE-208ENST00000479896 ATF3P18847 181 aa15.29■□□□□ 0.04
PTPRE-208ENST00000479896 EIF2S2P20042 333 aaKnown RBP15.29■□□□□ 0.04
PTPRE-208ENST00000479896 FOXD4L1Q9NU39 408 aa15.29■□□□□ 0.04
PTPRE-208ENST00000479896 MINK1Q8N4C8 1332 aaPredicted RBP15.29■□□□□ 0.04
PTPRE-208ENST00000479896 RUFY2Q8WXA3 655 aa15.29■□□□□ 0.04
PTPRE-208ENST00000479896 CCDC47Q96A33 483 aaKnown RBP15.29■□□□□ 0.04
PTPRE-208ENST00000479896 GOLGA6L3A6NEY3 463 aa15.28■□□□□ 0.04
PTPRE-208ENST00000479896 MYBBP1AQ9BQG0 1328 aaKnown RBP15.28■□□□□ 0.04
PTPRE-208ENST00000479896 CNKSR2Q8WXI2 1034 aa15.28■□□□□ 0.04
PTPRE-208ENST00000479896 DHX16O60231 1041 aaKnown RBP15.28■□□□□ 0.04
PTPRE-208ENST00000479896 TPM1P09493 284 aa15.28■□□□□ 0.04
PTPRE-208ENST00000479896 ATP6V1DQ9Y5K8 247 aa15.28■□□□□ 0.04
PTPRE-208ENST00000479896 RBM33Q96EV2 1170 aaKnown RBP15.27■□□□□ 0.04
PTPRE-208ENST00000479896 PANK3Q9H999 370 aa15.27■□□□□ 0.03
PTPRE-208ENST00000479896 WASHC2AQ641Q2 1341 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms