RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 TMF1P82094 1093 aa17.31■□□□□ 0.36
USP42-206ENST00000479544 NBPF8Q3BBV2 869 aa17.31■□□□□ 0.36
USP42-206ENST00000479544 PTMAP06454 111 aaKnown RBP17.31■□□□□ 0.36
USP42-206ENST00000479544 GOLGA6L3A6NEY3 463 aa17.31■□□□□ 0.36
USP42-206ENST00000479544 PBRM1Q86U86 1689 aa17.3■□□□□ 0.36
USP42-206ENST00000479544 TOP2BQ02880 1626 aa17.3■□□□□ 0.36
USP42-206ENST00000479544 GOLGA2Q08379 1002 aa17.29■□□□□ 0.36
USP42-206ENST00000479544 PLCB2Q00722 1185 aa17.29■□□□□ 0.36
USP42-206ENST00000479544 ADAMTS12P58397 1594 aa17.28■□□□□ 0.36
USP42-206ENST00000479544 CEP170Q5SW79 1584 aa17.28■□□□□ 0.36
USP42-206ENST00000479544 CNTLNQ9NXG0 1405 aa17.28■□□□□ 0.36
USP42-206ENST00000479544 HSCBQ8IWL3 235 aa17.28■□□□□ 0.36
USP42-206ENST00000479544 ROCK2O75116 1388 aaKnown RBP17.28■□□□□ 0.36
USP42-206ENST00000479544 MYBBP1AQ9BQG0 1328 aaKnown RBP17.28■□□□□ 0.36
USP42-206ENST00000479544 NUP155O75694 1391 aa17.28■□□□□ 0.36
USP42-206ENST00000479544 USP47Q96K76 1375 aa17.28■□□□□ 0.36
USP42-206ENST00000479544 HSP90AA2PQ14568 343 aaPredicted RBP17.27■□□□□ 0.36
USP42-206ENST00000479544 BACH2Q9BYV9 841 aa17.27■□□□□ 0.36
USP42-206ENST00000479544 PANK3Q9H999 370 aa17.27■□□□□ 0.35
USP42-206ENST00000479544 RRP7AQ9Y3A4 280 aaKnown RBP17.27■□□□□ 0.35
USP42-206ENST00000479544 U2SURPO15042 1029 aaKnown RBP17.26■□□□□ 0.35
USP42-206ENST00000479544 MS4A1P11836 297 aa17.26■□□□□ 0.35
USP42-206ENST00000479544 RSPH6AQ9H0K4 717 aa17.26■□□□□ 0.35
USP42-206ENST00000479544 COG6Q9Y2V7 657 aa17.26■□□□□ 0.35
USP42-206ENST00000479544 KIAA0586Q9BVV6 1533 aa17.26■□□□□ 0.35
USP42-206ENST00000479544 PDE3BQ13370 1112 aa17.25■□□□□ 0.35
USP42-206ENST00000479544 FGD6Q6ZV73 1430 aa17.25■□□□□ 0.35
USP42-206ENST00000479544 ZNF644Q9H582 1327 aaPredicted RBP17.25■□□□□ 0.35
USP42-206ENST00000479544 ABCA5Q8WWZ7 1642 aa17.24■□□□□ 0.35
USP42-206ENST00000479544 MYH16Q9H6N6 1097 aa17.24■□□□□ 0.35
USP42-206ENST00000479544 CENPQQ7L2Z9 268 aaPredicted RBP17.23■□□□□ 0.35
USP42-206ENST00000479544 APBB1O00213 710 aa17.21■□□□□ 0.35
USP42-206ENST00000479544 AMER1Q5JTC6 1135 aaPredicted RBP17.21■□□□□ 0.34
USP42-206ENST00000479544 PNISRQ8TF01 805 aaKnown RBP17.21■□□□□ 0.34
USP42-206ENST00000479544 KIF15Q9NS87 1388 aa17.2■□□□□ 0.34
USP42-206ENST00000479544 MSNP26038 577 aaKnown RBP17.2■□□□□ 0.34
USP42-206ENST00000479544 APAF1O14727 1248 aa17.2■□□□□ 0.34
USP42-206ENST00000479544 UACAQ9BZF9 1416 aa17.19■□□□□ 0.34
USP42-206ENST00000479544 CDCA8Q53HL2 280 aa17.19■□□□□ 0.34
USP42-206ENST00000479544 SAFB2Q14151 953 aaKnown RBP eCLIP17.18■□□□□ 0.34
USP42-206ENST00000479544 HNRNPMP52272 730 aaKnown RBP eCLIP17.17■□□□□ 0.341e-6■■■□□ 14.6
USP42-206ENST00000479544 CFAP53Q96M91 514 aa17.17■□□□□ 0.34
USP42-206ENST00000479544 ITPRIPQ8IWB1 547 aa17.15■□□□□ 0.34
USP42-206ENST00000479544 PLB1Q6P1J6 1458 aa17.15■□□□□ 0.34
USP42-206ENST00000479544 BIVM-ERCC5R4GMW8 1640 aa17.15■□□□□ 0.34
USP42-206ENST00000479544 MORC1Q86VD1 984 aa17.14■□□□□ 0.33
USP42-206ENST00000479544 MYOM3Q5VTT5 1437 aa17.14■□□□□ 0.33
USP42-206ENST00000479544 ADAMTS8Q9UP79 889 aa17.14■□□□□ 0.33
USP42-206ENST00000479544 CENPJQ9HC77 1338 aaPredicted RBP17.13■□□□□ 0.33
USP42-206ENST00000479544 ANKRD30AQ9BXX3 1397 aa17.13■□□□□ 0.33
USP42-206ENST00000479544 C20orf194Q5TEA3 1177 aa17.13■□□□□ 0.33
USP42-206ENST00000479544 PANK1Q8TE04 598 aa17.13■□□□□ 0.33
USP42-206ENST00000479544 U2AF1L5P0DN76 240 aaPredicted RBP17.12■□□□□ 0.33
USP42-206ENST00000479544 U2AF1Q01081 240 aaKnown RBP eCLIP17.12■□□□□ 0.33
USP42-206ENST00000479544 RWDD1Q9H446 243 aaPredicted RBP17.12■□□□□ 0.33
USP42-206ENST00000479544 FOXD4L5Q5VV16 416 aaPredicted RBP17.12■□□□□ 0.33
USP42-206ENST00000479544 FOXD4L4Q8WXT5 416 aaPredicted RBP17.12■□□□□ 0.33
USP42-206ENST00000479544 POGKQ9P215 609 aa17.12■□□□□ 0.33
USP42-206ENST00000479544 MAPK8IP3Q9UPT6 1336 aa17.12■□□□□ 0.33
USP42-206ENST00000479544 STAG3Q9UJ98 1225 aa17.11■□□□□ 0.33
USP42-206ENST00000479544 CASKIN1Q8WXD9 1431 aa17.11■□□□□ 0.33
USP42-206ENST00000479544 ABCC10Q5T3U5 1492 aa17.11■□□□□ 0.33
USP42-206ENST00000479544 NCOA2Q15596 1464 aa17.09■□□□□ 0.33
USP42-206ENST00000479544 GBP4Q96PP9 640 aa17.08■□□□□ 0.32
USP42-206ENST00000479544 TEX14Q8IWB6 1497 aa17.07■□□□□ 0.32
USP42-206ENST00000479544 ERCC6L2Q5T890 1561 aa17.07■□□□□ 0.32
USP42-206ENST00000479544 PLEKHG5O94827 1062 aa17.07■□□□□ 0.32
USP42-206ENST00000479544 SMG6Q86US8 1419 aaKnown RBP17.07■□□□□ 0.32
USP42-206ENST00000479544 TIAM1Q13009 1591 aa17.07■□□□□ 0.32
USP42-206ENST00000479544 SMC4Q9NTJ3 1288 aa17.07■□□□□ 0.32
USP42-206ENST00000479544 CUL7Q14999 1698 aa17.06■□□□□ 0.32
USP42-206ENST00000479544 BCAR3O75815 825 aa17.06■□□□□ 0.32
USP42-206ENST00000479544 FOXD4L6Q3SYB3 417 aaPredicted RBP17.06■□□□□ 0.32
USP42-206ENST00000479544 FOXD4L3Q6VB84 417 aaPredicted RBP17.06■□□□□ 0.32
USP42-206ENST00000479544 PMFBP1Q8TBY8 1022 aa17.05■□□□□ 0.32
USP42-206ENST00000479544 NOL8Q76FK4 1167 aaKnown RBP17.04■□□□□ 0.32
USP42-206ENST00000479544 FAM13BQ9NYF5 915 aa17.04■□□□□ 0.32
USP42-206ENST00000479544 PLPPR3Q6T4P5 718 aa17.04■□□□□ 0.32
USP42-206ENST00000479544 NBPF1Q3BBV0 1214 aa17.03■□□□□ 0.32
USP42-206ENST00000479544 ESF1Q9H501 851 aaKnown RBP17.03■□□□□ 0.32
USP42-206ENST00000479544 PKNOX2Q96KN3 472 aa17.02■□□□□ 0.32
USP42-206ENST00000479544 ASXL2Q76L83 1435 aa17.02■□□□□ 0.32
USP42-206ENST00000479544 ELL2O00472 640 aaPredicted RBP17.02■□□□□ 0.31
USP42-206ENST00000479544 DDX49Q9Y6V7 483 aaKnown RBP17.02■□□□□ 0.31
USP42-206ENST00000479544 KDM6BO15054 1643 aa17.01■□□□□ 0.31
USP42-206ENST00000479544 FYCO1Q9BQS8 1478 aa17■□□□□ 0.31
USP42-206ENST00000479544 MAPKBP1O60336 1514 aa17■□□□□ 0.31
USP42-206ENST00000479544 HFM1A2PYH4 1435 aa16.99■□□□□ 0.31
USP42-206ENST00000479544 ABCC2Q92887 1545 aa16.99■□□□□ 0.31
USP42-206ENST00000479544 CALD1Q05682 793 aaKnown RBP16.99■□□□□ 0.31
USP42-206ENST00000479544 FAM43AQ8N2R8 423 aa16.98■□□□□ 0.31
USP42-206ENST00000479544 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
USP42-206ENST00000479544 TRAK2O60296 914 aa16.97■□□□□ 0.31
USP42-206ENST00000479544 TAOK2Q9UL54 1235 aa16.97■□□□□ 0.31
USP42-206ENST00000479544 CGNL1Q0VF96 1302 aa16.97■□□□□ 0.31
USP42-206ENST00000479544 STK26Q9P289 416 aa16.96■□□□□ 0.31
USP42-206ENST00000479544 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.31
USP42-206ENST00000479544 NUTM2DQ5VT03 806 aaPredicted RBP16.96■□□□□ 0.31
USP42-206ENST00000479544 CHMP5Q9NZZ3 219 aa16.96■□□□□ 0.31
USP42-206ENST00000479544 NAIPQ13075 1403 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms