RNA–Protein interactions for RNA: ENST00000477819.1

PTPRN-214, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 4

Gene PTPRN, Length 579 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-214ENST00000477819 AGLP35573 1532 aa12.78□□□□□ -0.36
PTPRN-214ENST00000477819 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
PTPRN-214ENST00000477819 PRR29P0C7W0 189 aa12.77□□□□□ -0.37
PTPRN-214ENST00000477819 PKD2Q13563 968 aa12.77□□□□□ -0.37
PTPRN-214ENST00000477819 CHADLQ6NUI6 762 aa12.77□□□□□ -0.37
PTPRN-214ENST00000477819 ZMYM3Q14202 1370 aa12.77□□□□□ -0.37
PTPRN-214ENST00000477819 TOM1O60784 492 aa12.76□□□□□ -0.37
PTPRN-214ENST00000477819 NPATQ14207 1427 aa12.76□□□□□ -0.37
PTPRN-214ENST00000477819 CNTLNQ9NXG0 1405 aa12.76□□□□□ -0.37
PTPRN-214ENST00000477819 MLH3Q9UHC1 1453 aa12.76□□□□□ -0.37
PTPRN-214ENST00000477819 SPDYE4A6NLX3 237 aa12.75□□□□□ -0.37
PTPRN-214ENST00000477819 TCOF1Q13428 1488 aaKnown RBP12.75□□□□□ -0.37
PTPRN-214ENST00000477819 SUPT6HQ7KZ85 1726 aaKnown RBP12.74□□□□□ -0.37
PTPRN-214ENST00000477819 PLA2R1Q13018 1463 aa12.72□□□□□ -0.37
PTPRN-214ENST00000477819 RGS17Q9UGC6 210 aaPredicted RBP12.72□□□□□ -0.37
PTPRN-214ENST00000477819 MYO3AQ8NEV4 1616 aa12.72□□□□□ -0.37
PTPRN-214ENST00000477819 KIDINS220Q9ULH0 1771 aa12.71□□□□□ -0.37
PTPRN-214ENST00000477819 MROH2AA6NES4 1674 aa12.71□□□□□ -0.37
PTPRN-214ENST00000477819 CEP170BQ9Y4F5 1589 aaPredicted RBP12.71□□□□□ -0.37
PTPRN-214ENST00000477819 CDC42BPBQ9Y5S2 1711 aa12.71□□□□□ -0.38
PTPRN-214ENST00000477819 ZNF142P52746 1687 aaPredicted RBP12.7□□□□□ -0.38
PTPRN-214ENST00000477819 EVX2Q03828 476 aa12.7□□□□□ -0.38
PTPRN-214ENST00000477819 CLTCQ00610 1675 aaKnown RBP12.7□□□□□ -0.38
PTPRN-214ENST00000477819 ALKQ9UM73 1620 aa12.7□□□□□ -0.38
PTPRN-214ENST00000477819 CDK11AQ9UQ88 783 aaPredicted RBP12.69□□□□□ -0.38
PTPRN-214ENST00000477819 PTPRKQ15262 1439 aa12.69□□□□□ -0.38
PTPRN-214ENST00000477819 SHANK2Q9UPX8 1470 aa12.68□□□□□ -0.38
PTPRN-214ENST00000477819 TROQ12816 1431 aaPredicted RBP12.68□□□□□ -0.38
PTPRN-214ENST00000477819 ABCC1P33527 1531 aa12.67□□□□□ -0.38
PTPRN-214ENST00000477819 ITSN2Q9NZM3 1697 aa12.67□□□□□ -0.38
PTPRN-214ENST00000477819 CPS1P31327 1500 aa12.67□□□□□ -0.38
PTPRN-214ENST00000477819 GGT6Q6P531 493 aa12.64□□□□□ -0.39
PTPRN-214ENST00000477819 NEURL4Q96JN8 1562 aa12.64□□□□□ -0.39
PTPRN-214ENST00000477819 CLIP1P30622 1438 aa12.63□□□□□ -0.39
PTPRN-214ENST00000477819 DNMT1P26358 1616 aaKnown RBP12.63□□□□□ -0.39
PTPRN-214ENST00000477819 A2ML1A8K2U0 1454 aa12.63□□□□□ -0.39
PTPRN-214ENST00000477819 PREX2Q70Z35 1606 aa12.62□□□□□ -0.39
PTPRN-214ENST00000477819 LRRIQ1Q96JM4 1722 aa12.62□□□□□ -0.39
PTPRN-214ENST00000477819 SAMD9LQ8IVG5 1584 aa12.62□□□□□ -0.39
PTPRN-214ENST00000477819 VWDEQ8N2E2 1590 aa12.62□□□□□ -0.39
PTPRN-214ENST00000477819 ZNF777Q9ULD5 760 aaPredicted RBP12.62□□□□□ -0.39
PTPRN-214ENST00000477819 SPAG9O60271 1321 aaKnown RBP12.62□□□□□ -0.39
PTPRN-214ENST00000477819 POTEAQ6S8J7 498 aa12.61□□□□□ -0.39
PTPRN-214ENST00000477819 POLR1AO95602 1720 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-214ENST00000477819 HNRNPMP52272 730 aaKnown RBP eCLIP12.6□□□□□ -0.39
PTPRN-214ENST00000477819 FMN1Q68DA7 1419 aa12.6□□□□□ -0.39
PTPRN-214ENST00000477819 FBXO31Q5XUX0 539 aaPredicted RBP12.59□□□□□ -0.39
PTPRN-214ENST00000477819 C19orf67A6NJJ6 358 aa12.58□□□□□ -0.4
PTPRN-214ENST00000477819 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.57□□□□□ -0.4
PTPRN-214ENST00000477819 CDC42BPAQ5VT25 1732 aa12.57□□□□□ -0.4
PTPRN-214ENST00000477819 ANKLE2Q86XL3 938 aa12.57□□□□□ -0.4
PTPRN-214ENST00000477819 A2MP01023 1474 aa12.57□□□□□ -0.4
PTPRN-214ENST00000477819 SYCP2Q9BX26 1530 aa12.57□□□□□ -0.4
PTPRN-214ENST00000477819 PLXNC1O60486 1568 aa12.56□□□□□ -0.4
PTPRN-214ENST00000477819 STRCP1A6NGW2 1772 aa12.56□□□□□ -0.4
PTPRN-214ENST00000477819 ARHGAP35Q9NRY4 1499 aa12.56□□□□□ -0.4
PTPRN-214ENST00000477819 STAG3Q9UJ98 1225 aa12.55□□□□□ -0.4
PTPRN-214ENST00000477819 ATP7AQ04656 1500 aa12.55□□□□□ -0.4
PTPRN-214ENST00000477819 LRRC7Q96NW7 1537 aa12.55□□□□□ -0.4
PTPRN-214ENST00000477819 TNRQ92752 1358 aa12.55□□□□□ -0.4
PTPRN-214ENST00000477819 SETD1AO15047 1707 aaKnown RBP12.54□□□□□ -0.4
PTPRN-214ENST00000477819 NPHP4O75161 1426 aaPredicted RBP12.54□□□□□ -0.4
PTPRN-214ENST00000477819 UBTFP17480 764 aaKnown RBP12.53□□□□□ -0.4
PTPRN-214ENST00000477819 FARP1Q9Y4F1 1045 aaPredicted RBP12.53□□□□□ -0.4
PTPRN-214ENST00000477819 EEA1Q15075 1411 aa12.53□□□□□ -0.4
PTPRN-214ENST00000477819 SRCAPQ6ZRS2 3230 aa12.52□□□□□ -0.4
PTPRN-214ENST00000477819 INO80Q9ULG1 1556 aaPredicted RBP12.52□□□□□ -0.41
PTPRN-214ENST00000477819 THEMISQ8N1K5 641 aaPredicted RBP12.51□□□□□ -0.41
PTPRN-214ENST00000477819 RNF17Q9BXT8 1623 aaKnown RBP12.51□□□□□ -0.41
PTPRN-214ENST00000477819 MED14O60244 1454 aa12.5□□□□□ -0.41
PTPRN-214ENST00000477819 IQGAP1P46940 1657 aa12.49□□□□□ -0.41
PTPRN-214ENST00000477819 GPATCH8Q9UKJ3 1502 aaKnown RBP12.49□□□□□ -0.41
PTPRN-214ENST00000477819 CREBZFQ9NS37 354 aa12.49□□□□□ -0.41
PTPRN-214ENST00000477819 DEPDC5O75140 1603 aa12.48□□□□□ -0.41
PTPRN-214ENST00000477819 ADGBQ8N7X0 1667 aa12.47□□□□□ -0.41
PTPRN-214ENST00000477819 UGGT1Q9NYU2 1555 aa12.47□□□□□ -0.41
PTPRN-214ENST00000477819 MIA2Q96PC5 1412 aa12.46□□□□□ -0.41
PTPRN-214ENST00000477819 CFDP1Q9UEE9 299 aaPredicted RBP12.46□□□□□ -0.41
PTPRN-214ENST00000477819 FAM135AQ9P2D6 1515 aa12.46□□□□□ -0.42
PTPRN-214ENST00000477819 PZPP20742 1482 aa12.46□□□□□ -0.42
PTPRN-214ENST00000477819 KIAA1107Q9UPP5 1409 aa12.45□□□□□ -0.42
PTPRN-214ENST00000477819 ZNF644Q9H582 1327 aaPredicted RBP12.45□□□□□ -0.42
PTPRN-214ENST00000477819 SYNMO15061 1565 aa12.45□□□□□ -0.42
PTPRN-214ENST00000477819 KIF3BO15066 747 aa12.45□□□□□ -0.42
PTPRN-214ENST00000477819 CD44P16070 742 aaKnown RBP12.45□□□□□ -0.42
PTPRN-214ENST00000477819 XIRP1Q702N8 1843 aaKnown RBP12.44□□□□□ -0.42
PTPRN-214ENST00000477819 UPF1Q92900 1129 aaKnown RBP eCLIP12.44□□□□□ -0.42
PTPRN-214ENST00000477819 CCDC18Q5T9S5 1454 aa12.44□□□□□ -0.42
PTPRN-214ENST00000477819 CASKIN1Q8WXD9 1431 aa12.44□□□□□ -0.42
PTPRN-214ENST00000477819 WASHC2CQ9Y4E1 1318 aa12.43□□□□□ -0.42
PTPRN-214ENST00000477819 NLRP1Q9C000 1473 aa12.43□□□□□ -0.42
PTPRN-214ENST00000477819 DHX29Q7Z478 1369 aaKnown RBP12.43□□□□□ -0.42
PTPRN-214ENST00000477819 PLEKHH2Q8IVE3 1493 aa12.42□□□□□ -0.42
PTPRN-214ENST00000477819 PROM2Q8N271 834 aa12.42□□□□□ -0.42
PTPRN-214ENST00000477819 FAM135BQ49AJ0 1406 aa12.42□□□□□ -0.42
PTPRN-214ENST00000477819 ZC3H13Q5T200 1668 aaKnown RBP12.41□□□□□ -0.42
PTPRN-214ENST00000477819 KDM5DQ9BY66 1539 aa12.41□□□□□ -0.42
PTPRN-214ENST00000477819 CCNB3Q8WWL7 1395 aa12.4□□□□□ -0.42
PTPRN-214ENST00000477819 GABBR2O75899 941 aa12.39□□□□□ -0.43
PTPRN-214ENST00000477819 TRIM52Q96A61 297 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms