RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	DIP2C	Q9Y2E4	1556 aa		12.39	□□□□□ -0.43
HDAC9-223	ENST00000476135	NPAT	Q14207	1427 aa		12.39	□□□□□ -0.43
HDAC9-223	ENST00000476135	CNTLN	Q9NXG0	1405 aa		12.39	□□□□□ -0.43
HDAC9-223	ENST00000476135	TOM1	O60784	492 aa		12.39	□□□□□ -0.43
HDAC9-223	ENST00000476135	EFCAB2	Q5VUJ9	269 aa		12.39	□□□□□ -0.43
HDAC9-223	ENST00000476135	GABBR2	O75899	941 aa		12.38	□□□□□ -0.43
HDAC9-223	ENST00000476135	PLA2R1	Q13018	1463 aa		12.38	□□□□□ -0.43
HDAC9-223	ENST00000476135	PIP4K2B	P78356	416 aa		12.37	□□□□□ -0.43
HDAC9-223	ENST00000476135	PROM2	Q8N271	834 aa		12.37	□□□□□ -0.43
HDAC9-223	ENST00000476135	MYO5C	Q9NQX4	1742 aa		12.37	□□□□□ -0.43
HDAC9-223	ENST00000476135	MROH2A	A6NES4	1674 aa		12.36	□□□□□ -0.43
HDAC9-223	ENST00000476135	TCOF1	Q13428	1488 aa	Known RBP	12.36	□□□□□ -0.43
HDAC9-223	ENST00000476135	AFAP1	Q8N556	730 aa		12.35	□□□□□ -0.43
HDAC9-223	ENST00000476135	ZNF142	P52746	1687 aa	Predicted RBP	12.35	□□□□□ -0.43
HDAC9-223	ENST00000476135	ABCA6	Q8N139	1617 aa		12.34	□□□□□ -0.43
HDAC9-223	ENST00000476135	MYT1L	Q9UL68	1186 aa		12.34	□□□□□ -0.43
HDAC9-223	ENST00000476135	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.34	□□□□□ -0.43
HDAC9-223	ENST00000476135	MLH3	Q9UHC1	1453 aa		12.34	□□□□□ -0.43
HDAC9-223	ENST00000476135	CPS1	P31327	1500 aa		12.33	□□□□□ -0.44
HDAC9-223	ENST00000476135	ZMYM3	Q14202	1370 aa		12.3	□□□□□ -0.44
HDAC9-223	ENST00000476135	MYO3A	Q8NEV4	1616 aa		12.3	□□□□□ -0.44
HDAC9-223	ENST00000476135	PTPRK	Q15262	1439 aa		12.3	□□□□□ -0.44
HDAC9-223	ENST00000476135	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	12.3	□□□□□ -0.44
HDAC9-223	ENST00000476135	CDK13	Q14004	1512 aa	Known RBP	12.29	□□□□□ -0.44
HDAC9-223	ENST00000476135	RGS17	Q9UGC6	210 aa	Predicted RBP	12.28	□□□□□ -0.44
HDAC9-223	ENST00000476135	SHANK2	Q9UPX8	1470 aa		12.27	□□□□□ -0.44
HDAC9-223	ENST00000476135	ARHGAP5	Q13017	1502 aa		12.27	□□□□□ -0.44
HDAC9-223	ENST00000476135	ALK	Q9UM73	1620 aa		12.27	□□□□□ -0.44
HDAC9-223	ENST00000476135	KIDINS220	Q9ULH0	1771 aa		12.25	□□□□□ -0.45
HDAC9-223	ENST00000476135	POLR1A	O95602	1720 aa	Predicted RBP	12.24	□□□□□ -0.45
HDAC9-223	ENST00000476135	MNX1	P50219	401 aa	Predicted RBP	12.24	□□□□□ -0.45
HDAC9-223	ENST00000476135	ZRANB1	Q9UGI0	708 aa		12.24	□□□□□ -0.45
HDAC9-223	ENST00000476135	KIF14	Q15058	1648 aa		12.23	□□□□□ -0.45
HDAC9-223	ENST00000476135	CLTC	Q00610	1675 aa	Known RBP	12.22	□□□□□ -0.45
HDAC9-223	ENST00000476135	RANGAP1	P46060	587 aa	Predicted RBP	12.22	□□□□□ -0.45
HDAC9-223	ENST00000476135	CDK11A	Q9UQ88	783 aa	Predicted RBP	12.22	□□□□□ -0.45
HDAC9-223	ENST00000476135	CDC42BPB	Q9Y5S2	1711 aa		12.22	□□□□□ -0.45
HDAC9-223	ENST00000476135	ITSN2	Q9NZM3	1697 aa		12.22	□□□□□ -0.45
HDAC9-223	ENST00000476135	DNMT1	P26358	1616 aa	Known RBP	12.22	□□□□□ -0.45
HDAC9-223	ENST00000476135	A2ML1	A8K2U0	1454 aa		12.21	□□□□□ -0.45
HDAC9-223	ENST00000476135	ZNF579	Q8NAF0	562 aa	Known RBP	12.21	□□□□□ -0.45
HDAC9-223	ENST00000476135	NEURL4	Q96JN8	1562 aa		12.21	□□□□□ -0.46
HDAC9-223	ENST00000476135	ABCC1	P33527	1531 aa		12.21	□□□□□ -0.46
HDAC9-223	ENST00000476135	VWDE	Q8N2E2	1590 aa		12.2	□□□□□ -0.46
HDAC9-223	ENST00000476135	TRO	Q12816	1431 aa	Predicted RBP	12.19	□□□□□ -0.46
HDAC9-223	ENST00000476135	CLCN6	P51797	869 aa		12.18	□□□□□ -0.46
HDAC9-223	ENST00000476135	POTEA	Q6S8J7	498 aa		12.18	□□□□□ -0.46
HDAC9-223	ENST00000476135	PREX2	Q70Z35	1606 aa		12.17	□□□□□ -0.46
HDAC9-223	ENST00000476135	CLIP1	P30622	1438 aa		12.17	□□□□□ -0.46
HDAC9-223	ENST00000476135	RNF17	Q9BXT8	1623 aa	Known RBP	12.15	□□□□□ -0.46
HDAC9-223	ENST00000476135	SAMD9L	Q8IVG5	1584 aa		12.14	□□□□□ -0.47
HDAC9-223	ENST00000476135	POTEI	P0CG38	1075 aa		12.14	□□□□□ -0.47
HDAC9-223	ENST00000476135	ANKLE2	Q86XL3	938 aa		12.14	□□□□□ -0.47
HDAC9-223	ENST00000476135	PLXNC1	O60486	1568 aa		12.13	□□□□□ -0.47
HDAC9-223	ENST00000476135	LRRC7	Q96NW7	1537 aa		12.13	□□□□□ -0.47
HDAC9-223	ENST00000476135	PAK3	O75914	559 aa	Predicted RBP	12.13	□□□□□ -0.47
HDAC9-223	ENST00000476135	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.13	□□□□□ -0.47
HDAC9-223	ENST00000476135	MED14	O60244	1454 aa		12.13	□□□□□ -0.47
HDAC9-223	ENST00000476135	SYNM	O15061	1565 aa		12.13	□□□□□ -0.47
HDAC9-223	ENST00000476135	FMN1	Q68DA7	1419 aa		12.12	□□□□□ -0.47
HDAC9-223	ENST00000476135	DEPDC5	O75140	1603 aa		12.12	□□□□□ -0.47
HDAC9-223	ENST00000476135	SETD1A	O15047	1707 aa	Known RBP	12.12	□□□□□ -0.47
HDAC9-223	ENST00000476135	FKBP8	Q14318	412 aa		12.12	□□□□□ -0.47
HDAC9-223	ENST00000476135	NPHP4	O75161	1426 aa	Predicted RBP	12.11	□□□□□ -0.47
HDAC9-223	ENST00000476135	STRCP1	A6NGW2	1772 aa		12.11	□□□□□ -0.47
HDAC9-223	ENST00000476135	A2M	P01023	1474 aa		12.11	□□□□□ -0.47
HDAC9-223	ENST00000476135	GGT6	Q6P531	493 aa		12.11	□□□□□ -0.47
HDAC9-223	ENST00000476135	SPAG9	O60271	1321 aa	Known RBP	12.11	□□□□□ -0.47
HDAC9-223	ENST00000476135	THEMIS	Q8N1K5	641 aa	Predicted RBP	12.09	□□□□□ -0.47
HDAC9-223	ENST00000476135	PHF12	Q96QT6	1004 aa		12.09	□□□□□ -0.47
HDAC9-223	ENST00000476135	ATP7A	Q04656	1500 aa		12.09	□□□□□ -0.47
HDAC9-223	ENST00000476135	IQGAP1	P46940	1657 aa		12.09	□□□□□ -0.47
HDAC9-223	ENST00000476135	TNR	Q92752	1358 aa		12.08	□□□□□ -0.48
HDAC9-223	ENST00000476135	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
HDAC9-223	ENST00000476135	CDC42BPA	Q5VT25	1732 aa		12.08	□□□□□ -0.48
HDAC9-223	ENST00000476135	UPF1	Q92900	1129 aa	Known RBP eCLIP	12.07	□□□□□ -0.48
HDAC9-223	ENST00000476135	LRRIQ1	Q96JM4	1722 aa		12.06	□□□□□ -0.48
HDAC9-223	ENST00000476135	INO80	Q9ULG1	1556 aa	Predicted RBP	12.06	□□□□□ -0.48
HDAC9-223	ENST00000476135	FAM135B	Q49AJ0	1406 aa		12.06	□□□□□ -0.48
HDAC9-223	ENST00000476135	GALR2	O43603	387 aa	Predicted RBP	12.06	□□□□□ -0.48
HDAC9-223	ENST00000476135	MIER1	Q8N108	512 aa		12.06	□□□□□ -0.48
HDAC9-223	ENST00000476135	DCBLD2	Q96PD2	775 aa		12.05	□□□□□ -0.48
HDAC9-223	ENST00000476135	ADGB	Q8N7X0	1667 aa		12.05	□□□□□ -0.48
HDAC9-223	ENST00000476135	SYCP2	Q9BX26	1530 aa		12.05	□□□□□ -0.48
HDAC9-223	ENST00000476135	FAM135A	Q9P2D6	1515 aa		12.05	□□□□□ -0.48
HDAC9-223	ENST00000476135	EEA1	Q15075	1411 aa		12.04	□□□□□ -0.48
HDAC9-223	ENST00000476135	NLRP1	Q9C000	1473 aa		12.04	□□□□□ -0.48
HDAC9-223	ENST00000476135	UGGT1	Q9NYU2	1555 aa		12.04	□□□□□ -0.48
HDAC9-223	ENST00000476135	PZP	P20742	1482 aa		12.03	□□□□□ -0.48
HDAC9-223	ENST00000476135	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.03	□□□□□ -0.48
HDAC9-223	ENST00000476135	FBXO31	Q5XUX0	539 aa	Predicted RBP	12.03	□□□□□ -0.48
HDAC9-223	ENST00000476135	XIRP1	Q702N8	1843 aa	Known RBP	12.02	□□□□□ -0.48
HDAC9-223	ENST00000476135	LHX8	Q68G74	356 aa		12.02	□□□□□ -0.49
HDAC9-223	ENST00000476135	MIA2	Q96PC5	1412 aa		12.02	□□□□□ -0.49
HDAC9-223	ENST00000476135	KIAA1107	Q9UPP5	1409 aa		12.02	□□□□□ -0.49
HDAC9-223	ENST00000476135	PLEKHG5	O94827	1062 aa		12.01	□□□□□ -0.49
HDAC9-223	ENST00000476135	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.01	□□□□□ -0.49
HDAC9-223	ENST00000476135	PLEKHH2	Q8IVE3	1493 aa		12.01	□□□□□ -0.49
HDAC9-223	ENST00000476135	ZC3H13	Q5T200	1668 aa	Known RBP	12	□□□□□ -0.49
HDAC9-223	ENST00000476135	ARHGAP35	Q9NRY4	1499 aa		12	□□□□□ -0.49

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