RNA–Protein interactions for RNA: ENST00000475835.2

LSM2-211, Transcript of LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 5

Gene LSM2, Length 211 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM2-211	ENST00000475835	TSPYL1	Q9H0U9	437 aa		4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	PNN	Q9H307	717 aa	Known RBP	4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	RIPOR2	Q9Y4F9	1068 aa		4.93	□□□□□ -1.62
LSM2-211	ENST00000475835	CLCN1	P35523	988 aa		4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	TERF1	P54274	439 aa		4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	MYBPC2	Q14324	1141 aa		4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	ZKSCAN8	Q15776	578 aa	Predicted RBP	4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	FOXD1	Q16676	465 aa		4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	PLCD3	Q8N3E9	789 aa		4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	GTPBP4	Q9BZE4	634 aa	Known RBP	4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	GOLGA3	Q08378	1498 aa		4.92	□□□□□ -1.62
LSM2-211	ENST00000475835	IGF1R	P08069	1367 aa		4.91	□□□□□ -1.62
LSM2-211	ENST00000475835	KIF21B	O75037	1637 aa		4.91	□□□□□ -1.62
LSM2-211	ENST00000475835	SATB1	Q01826	763 aa		4.91	□□□□□ -1.62
LSM2-211	ENST00000475835	GSE1	Q14687	1217 aa		4.91	□□□□□ -1.62
LSM2-211	ENST00000475835	DNTTIP2	Q5QJE6	756 aa	Known RBP	4.91	□□□□□ -1.62
LSM2-211	ENST00000475835	MYH16	Q9H6N6	1097 aa		4.91	□□□□□ -1.62
LSM2-211	ENST00000475835	ZBTB22	O15209	634 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	MAP2K1	Q02750	393 aa	Predicted RBP	4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	CCDC96	Q2M329	555 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	FAM9B	Q8IZU0	186 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	SDR16C5	Q8N3Y7	309 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	TSPAN18	Q96SJ8	248 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	NUB1	Q9Y5A7	615 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	TNIK	Q9UKE5	1360 aa		4.9	□□□□□ -1.63
LSM2-211	ENST00000475835	CCDC88B	A6NC98	1476 aa		4.89	□□□□□ -1.63
LSM2-211	ENST00000475835	SOX12	O15370	315 aa		4.89	□□□□□ -1.63
LSM2-211	ENST00000475835	SEMA3F	Q13275	785 aa		4.89	□□□□□ -1.63
LSM2-211	ENST00000475835	MTA1	Q13330	715 aa		4.89	□□□□□ -1.63
LSM2-211	ENST00000475835	TMCO4	Q5TGY1	634 aa		4.89	□□□□□ -1.63
LSM2-211	ENST00000475835	MSL3	Q8N5Y2	521 aa	Known RBP	4.89	□□□□□ -1.63
LSM2-211	ENST00000475835	ANP32C	O43423	234 aa		4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	ZRANB2	O95218	330 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	ARID4A	P29374	1257 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	FOXD4L5	Q5VV16	416 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	ANKRD23	Q86SG2	305 aa		4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	ZNF428	Q96B54	188 aa		4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	SGSM3	Q96HU1	749 aa		4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	IPO9	Q96P70	1041 aa	Known RBP	4.88	□□□□□ -1.63
LSM2-211	ENST00000475835	MFAP1	P55081	439 aa	Known RBP	4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	BRPF1	P55201	1214 aa	Predicted RBP	4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	NOL8	Q76FK4	1167 aa	Known RBP	4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	ANKRD13A	Q8IZ07	590 aa		4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	SNRNP27	Q8WVK2	155 aa	Known RBP	4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	FAM210A	Q96ND0	272 aa		4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	TRAIP	Q9BWF2	469 aa		4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	C1orf115	Q9H7X2	142 aa		4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	CEP164	Q9UPV0	1460 aa		4.87	□□□□□ -1.63
LSM2-211	ENST00000475835	ZNF500	O60304	480 aa	Predicted RBP	4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	NEFH	P12036	1026 aa		4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	L1TD1	Q5T7N2	865 aa	Known RBP	4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	NME8	Q8N427	588 aa		4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	DNAJC5	Q9H3Z4	198 aa		4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	EFCC1	Q9HA90	598 aa		4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	MRVI1	Q9Y6F6	885 aa		4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	RAD54L2	Q9Y4B4	1467 aa		4.86	□□□□□ -1.63
LSM2-211	ENST00000475835	VGLL3	A8MV65	326 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	LIG1	P18858	919 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	GORAB	Q5T7V8	394 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	MIER1	Q8N108	512 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	BANK1	Q8NDB2	785 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	UBA5	Q9GZZ9	404 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	CEP126	Q9P2H0	1117 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	ZBTB47	Q9UFB7	747 aa	Predicted RBP	4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	SOGA1	O94964	1423 aa		4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	BAZ1B	Q9UIG0	1483 aa	Known RBP	4.85	□□□□□ -1.63
LSM2-211	ENST00000475835	SYNJ1	O43426	1573 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	IRF6	O14896	467 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	TPD52L2	O43399	206 aa	Known RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	KIF1C	O43896	1103 aa	Known RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	MCCD1	P59942	119 aa	Predicted RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	LMOD3	Q0VAK6	560 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	MAPK8IP2	Q13387	824 aa	Predicted RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	UVSSA	Q2YD98	709 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	CDCA8	Q53HL2	280 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	WDR78	Q5VTH9	848 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	FOXD4L3	Q6VB84	417 aa	Predicted RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	ARHGEF1	Q92888	912 aa	Known RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	ITFG2	Q969R8	447 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	PAIP2	Q9BPZ3	127 aa	Known RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	MTA3	Q9BTC8	594 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	HIRIP3	Q9BW71	556 aa	Predicted RBP	4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	NBPF3	Q9H094	633 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	CEP83	Q9Y592	693 aa		4.84	□□□□□ -1.63
LSM2-211	ENST00000475835	CLIP1	P30622	1438 aa		4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	VPS8	Q8N3P4	1428 aa		4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	ZRSR2	Q15696	482 aa	Known RBP	4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	CTR9	Q6PD62	1173 aa		4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	KRBA2	Q6ZNG9	492 aa		4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	ARMCX6	Q7L4S7	300 aa		4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	MYCBP	Q99417	103 aa	Predicted RBP	4.83	□□□□□ -1.64
LSM2-211	ENST00000475835	PEG3	Q9GZU2	1588 aa		4.82	□□□□□ -1.64
LSM2-211	ENST00000475835	RUSC2	Q8N2Y8	1516 aa		4.82	□□□□□ -1.64
LSM2-211	ENST00000475835	ESPN	B1AK53	854 aa		4.82	□□□□□ -1.64
LSM2-211	ENST00000475835	KIF3C	O14782	793 aa		4.82	□□□□□ -1.64
LSM2-211	ENST00000475835	CDC37	Q16543	378 aa	Predicted RBP	4.82	□□□□□ -1.64
LSM2-211	ENST00000475835	CSPP1	Q1MSJ5	1256 aa		4.82	□□□□□ -1.64
LSM2-211	ENST00000475835	DDX46	Q7L014	1031 aa	Known RBP	4.82	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms