RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 CD109Q6YHK3 1445 aa17.26■□□□□ 0.35
SYNE1-222ENST00000474655 ZNF518AQ6AHZ1 1483 aa17.26■□□□□ 0.35
SYNE1-222ENST00000474655 VWDEQ8N2E2 1590 aa17.25■□□□□ 0.35
SYNE1-222ENST00000474655 KDM5CP41229 1560 aa17.25■□□□□ 0.35
SYNE1-222ENST00000474655 CCDC144AA2RUR9 1427 aa17.24■□□□□ 0.35
SYNE1-222ENST00000474655 RALGAPBQ86X10 1494 aa17.23■□□□□ 0.35
SYNE1-222ENST00000474655 RIMBP3CA6NJZ7 1639 aa17.23■□□□□ 0.35
SYNE1-222ENST00000474655 RIMBP3BA6NNM3 1639 aa17.23■□□□□ 0.35
SYNE1-222ENST00000474655 RIMBP3Q9UFD9 1639 aa17.23■□□□□ 0.35
SYNE1-222ENST00000474655 E9PCH4 1651 aa17.23■□□□□ 0.35
SYNE1-222ENST00000474655 TET3O43151 1660 aa17.22■□□□□ 0.35
SYNE1-222ENST00000474655 DHX29Q7Z478 1369 aaKnown RBP17.22■□□□□ 0.35
SYNE1-222ENST00000474655 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.22■□□□□ 0.35
SYNE1-222ENST00000474655 PRDM15P57071 1507 aaPredicted RBP17.21■□□□□ 0.35
SYNE1-222ENST00000474655 NEO1Q92859 1461 aa17.21■□□□□ 0.35
SYNE1-222ENST00000474655 MAP3K4Q9Y6R4 1608 aa17.21■□□□□ 0.35
SYNE1-222ENST00000474655 WASHC2AQ641Q2 1341 aa17.2■□□□□ 0.34
SYNE1-222ENST00000474655 MROH1Q8NDA8 1641 aa17.2■□□□□ 0.34
SYNE1-222ENST00000474655 GLI2P10070 1586 aa17.2■□□□□ 0.34
SYNE1-222ENST00000474655 MLH3Q9UHC1 1453 aa17.2■□□□□ 0.34
SYNE1-222ENST00000474655 POGZQ7Z3K3 1410 aa17.2■□□□□ 0.34
SYNE1-222ENST00000474655 BCORL1Q5H9F3 1711 aa17.18■□□□□ 0.34
SYNE1-222ENST00000474655 SPHKAPQ2M3C7 1700 aa17.18■□□□□ 0.34
SYNE1-222ENST00000474655 HECW2Q9P2P5 1572 aa17.17■□□□□ 0.34
SYNE1-222ENST00000474655 PTPRTO14522 1441 aa17.17■□□□□ 0.34
SYNE1-222ENST00000474655 TRPM2O94759 1503 aa17.16■□□□□ 0.34
SYNE1-222ENST00000474655 RNF17Q9BXT8 1623 aaKnown RBP17.16■□□□□ 0.34
SYNE1-222ENST00000474655 TRPM1Q7Z4N2 1603 aa17.16■□□□□ 0.34
SYNE1-222ENST00000474655 YTHDC1Q96MU7 727 aaKnown RBP17.15■□□□□ 0.34
SYNE1-222ENST00000474655 CCDC7Q96M83 1385 aa17.15■□□□□ 0.34
SYNE1-222ENST00000474655 CEP152O94986 1710 aa17.14■□□□□ 0.33
SYNE1-222ENST00000474655 A2MP01023 1474 aa17.14■□□□□ 0.33
SYNE1-222ENST00000474655 KANK1Q14678 1352 aa17.14■□□□□ 0.33
SYNE1-222ENST00000474655 PRAG1Q86YV5 1406 aa17.13■□□□□ 0.33
SYNE1-222ENST00000474655 C11orf95C9JLR9 678 aaPredicted RBP17.13■□□□□ 0.33
SYNE1-222ENST00000474655 CCER2I3L3R5 266 aa17.13■□□□□ 0.33
SYNE1-222ENST00000474655 USP47Q96K76 1375 aa17.13■□□□□ 0.33
SYNE1-222ENST00000474655 NEURL4Q96JN8 1562 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 ANP32CO43423 234 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 DCAF11Q8TEB1 546 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 RICTORQ6R327 1708 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 LAMC1P11047 1609 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 LMTK2Q8IWU2 1503 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 FRMPD1Q5SYB0 1578 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 CYB5RLQ6IPT4 315 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 CNTLNQ9NXG0 1405 aa17.12■□□□□ 0.33
SYNE1-222ENST00000474655 SCAF1Q9H7N4 1312 aaKnown RBP17.11■□□□□ 0.33
SYNE1-222ENST00000474655 ABCA6Q8N139 1617 aa17.11■□□□□ 0.33
SYNE1-222ENST00000474655 KIF3BO15066 747 aa17.1■□□□□ 0.33
SYNE1-222ENST00000474655 ARID4BQ4LE39 1312 aaPredicted RBP17.09■□□□□ 0.33
SYNE1-222ENST00000474655 EFCAB6Q5THR3 1501 aa17.09■□□□□ 0.33
SYNE1-222ENST00000474655 CLTCL1P53675 1640 aa17.09■□□□□ 0.33
SYNE1-222ENST00000474655 GPRASP1Q5JY77 1395 aa17.08■□□□□ 0.33
SYNE1-222ENST00000474655 ZNF326Q5BKZ1 582 aaKnown RBP17.08■□□□□ 0.33
SYNE1-222ENST00000474655 KIF7Q2M1P5 1343 aa17.08■□□□□ 0.32
SYNE1-222ENST00000474655 DIP2BQ9P265 1576 aa17.08■□□□□ 0.32
SYNE1-222ENST00000474655 MYT1LQ9UL68 1186 aa17.07■□□□□ 0.32
SYNE1-222ENST00000474655 KDM2AQ9Y2K7 1162 aa17.07■□□□□ 0.32
SYNE1-222ENST00000474655 PPRC1Q5VV67 1664 aaKnown RBP17.06■□□□□ 0.32
SYNE1-222ENST00000474655 CARD11Q9BXL7 1154 aa17.06■□□□□ 0.32
SYNE1-222ENST00000474655 STAC3Q96MF2 364 aa17.05■□□□□ 0.32
SYNE1-222ENST00000474655 DIP2CQ9Y2E4 1556 aa17.04■□□□□ 0.32
SYNE1-222ENST00000474655 RGL3Q3MIN7 710 aa17.04■□□□□ 0.32
SYNE1-222ENST00000474655 ROCK2O75116 1388 aaKnown RBP17.03■□□□□ 0.32
SYNE1-222ENST00000474655 MADDQ8WXG6 1647 aa17.02■□□□□ 0.32
SYNE1-222ENST00000474655 KIF1BO60333 1816 aa17.02■□□□□ 0.31
SYNE1-222ENST00000474655 ZMYM4Q5VZL5 1548 aa17.01■□□□□ 0.31
SYNE1-222ENST00000474655 RAPGEF3O95398 923 aa17■□□□□ 0.31
SYNE1-222ENST00000474655 IFT172Q9UG01 1749 aa16.98■□□□□ 0.31
SYNE1-222ENST00000474655 KIAA1210Q9ULL0 1709 aa16.98■□□□□ 0.31
SYNE1-222ENST00000474655 ABCC3O15438 1527 aa16.97■□□□□ 0.31
SYNE1-222ENST00000474655 ST20-MTHFSA0A0A6YYL1 179 aa16.97■□□□□ 0.31
SYNE1-222ENST00000474655 NBPF1Q3BBV0 1214 aa16.97■□□□□ 0.31
SYNE1-222ENST00000474655 ZC3H13Q5T200 1668 aaKnown RBP16.97■□□□□ 0.31
SYNE1-222ENST00000474655 GTF3C3Q9Y5Q9 886 aa16.96■□□□□ 0.31
SYNE1-222ENST00000474655 CAMSAP1Q5T5Y3 1602 aa16.96■□□□□ 0.31
SYNE1-222ENST00000474655 FAM69CQ0P6D2 419 aa16.95■□□□□ 0.3
SYNE1-222ENST00000474655 IQGAP1P46940 1657 aa16.95■□□□□ 0.3
SYNE1-222ENST00000474655 NPATQ14207 1427 aa16.95■□□□□ 0.3
SYNE1-222ENST00000474655 PRKRIP1Q9H875 184 aaPredicted RBP16.94■□□□□ 0.3
SYNE1-222ENST00000474655 TSPOAP1O95153 1857 aa16.94■□□□□ 0.3
SYNE1-222ENST00000474655 UGGT1Q9NYU2 1555 aa16.94■□□□□ 0.3
SYNE1-222ENST00000474655 MYOM2P54296 1465 aa16.94■□□□□ 0.3
SYNE1-222ENST00000474655 KIF13AQ9H1H9 1805 aa16.94■□□□□ 0.3
SYNE1-222ENST00000474655 YEATS2Q9ULM3 1422 aa16.93■□□□□ 0.3
SYNE1-222ENST00000474655 MROH2AA6NES4 1674 aa16.93■□□□□ 0.3
SYNE1-222ENST00000474655 ADGRB3O60242 1522 aa16.92■□□□□ 0.3
SYNE1-222ENST00000474655 REREQ9P2R6 1566 aa16.92■□□□□ 0.3
SYNE1-222ENST00000474655 ARHGAP31Q2M1Z3 1444 aa16.92■□□□□ 0.3
SYNE1-222ENST00000474655 SIGLEC1Q9BZZ2 1709 aa16.91■□□□□ 0.3
SYNE1-222ENST00000474655 CFAP65Q6ZU64 1925 aaKnown RBP16.91■□□□□ 0.3
SYNE1-222ENST00000474655 PIK3C2BO00750 1634 aa16.9■□□□□ 0.3
SYNE1-222ENST00000474655 GGT6Q6P531 493 aa16.9■□□□□ 0.3
SYNE1-222ENST00000474655 NOS1P29475 1434 aa16.9■□□□□ 0.3
SYNE1-222ENST00000474655 NRXN1Q9ULB1 1477 aa16.9■□□□□ 0.3
SYNE1-222ENST00000474655 COL17A1Q9UMD9 1497 aaPredicted RBP16.9■□□□□ 0.3
SYNE1-222ENST00000474655 TESK2Q96S53 571 aa16.89■□□□□ 0.29
SYNE1-222ENST00000474655 WASHC2CQ9Y4E1 1318 aa16.89■□□□□ 0.29
SYNE1-222ENST00000474655 PPLO60437 1756 aa16.88■□□□□ 0.29
SYNE1-222ENST00000474655 AGLP35573 1532 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms