RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 WASHC2AQ641Q2 1341 aa13.84□□□□□ -0.19
USP39-214ENST00000474572 KIDINS220Q9ULH0 1771 aa13.83□□□□□ -0.19
USP39-214ENST00000474572 TRPM1Q7Z4N2 1603 aa13.83□□□□□ -0.2
USP39-214ENST00000474572 TET3O43151 1660 aa13.83□□□□□ -0.2
USP39-214ENST00000474572 CCER2I3L3R5 266 aa13.83□□□□□ -0.2
USP39-214ENST00000474572 YTHDC1Q96MU7 727 aaKnown RBP13.83□□□□□ -0.2
USP39-214ENST00000474572 PRDM15P57071 1507 aaPredicted RBP13.83□□□□□ -0.2
USP39-214ENST00000474572 CNTLNQ9NXG0 1405 aa13.82□□□□□ -0.2
USP39-214ENST00000474572 MROH1Q8NDA8 1641 aa13.82□□□□□ -0.2
USP39-214ENST00000474572 CCDC7Q96M83 1385 aa13.82□□□□□ -0.2
USP39-214ENST00000474572 BCORL1Q5H9F3 1711 aa13.81□□□□□ -0.2
USP39-214ENST00000474572 SPAG9O60271 1321 aaKnown RBP13.81□□□□□ -0.2
USP39-214ENST00000474572 CEP152O94986 1710 aa13.81□□□□□ -0.2
USP39-214ENST00000474572 SPHKAPQ2M3C7 1700 aa13.81□□□□□ -0.2
USP39-214ENST00000474572 CCDC144AA2RUR9 1427 aa13.81□□□□□ -0.2
USP39-214ENST00000474572 NEURL4Q96JN8 1562 aa13.8□□□□□ -0.2
USP39-214ENST00000474572 SCAPERQ9BY12 1400 aa13.8□□□□□ -0.2
USP39-214ENST00000474572 TRPM2O94759 1503 aa13.8□□□□□ -0.2
USP39-214ENST00000474572 RNF17Q9BXT8 1623 aaKnown RBP13.79□□□□□ -0.2
USP39-214ENST00000474572 ANP32CO43423 234 aa13.78□□□□□ -0.2
USP39-214ENST00000474572 A2MP01023 1474 aa13.78□□□□□ -0.2
USP39-214ENST00000474572 ZNF518AQ6AHZ1 1483 aa13.78□□□□□ -0.2
USP39-214ENST00000474572 PTPRTO14522 1441 aa13.77□□□□□ -0.21
USP39-214ENST00000474572 PRAG1Q86YV5 1406 aa13.77□□□□□ -0.21
USP39-214ENST00000474572 LMTK2Q8IWU2 1503 aa13.76□□□□□ -0.21
USP39-214ENST00000474572 USP47Q96K76 1375 aa13.76□□□□□ -0.21
USP39-214ENST00000474572 AFAP1Q8N556 730 aa13.76□□□□□ -0.21
USP39-214ENST00000474572 MAP3K4Q9Y6R4 1608 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 HECW2Q9P2P5 1572 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 NEO1Q92859 1461 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 MLH3Q9UHC1 1453 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 POGZQ7Z3K3 1410 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 GPRASP1Q5JY77 1395 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 DHX29Q7Z478 1369 aaKnown RBP13.75□□□□□ -0.21
USP39-214ENST00000474572 C11orf95C9JLR9 678 aaPredicted RBP13.75□□□□□ -0.21
USP39-214ENST00000474572 GTF3C3Q9Y5Q9 886 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 GLI2P10070 1586 aa13.75□□□□□ -0.21
USP39-214ENST00000474572 CD109Q6YHK3 1445 aa13.74□□□□□ -0.21
USP39-214ENST00000474572 ARID4BQ4LE39 1312 aaPredicted RBP13.74□□□□□ -0.21
USP39-214ENST00000474572 NPM1P06748 294 aaKnown RBP eCLIP13.74□□□□□ -0.21
USP39-214ENST00000474572 CLTCL1P53675 1640 aa13.74□□□□□ -0.21
USP39-214ENST00000474572 KIF7Q2M1P5 1343 aa13.73□□□□□ -0.21
USP39-214ENST00000474572 FRMPD1Q5SYB0 1578 aa13.73□□□□□ -0.21
USP39-214ENST00000474572 EFCAB6Q5THR3 1501 aa13.72□□□□□ -0.21
USP39-214ENST00000474572 MADDQ8WXG6 1647 aa13.72□□□□□ -0.21
USP39-214ENST00000474572 RIMBP3CA6NJZ7 1639 aa13.71□□□□□ -0.22
USP39-214ENST00000474572 RIMBP3BA6NNM3 1639 aa13.71□□□□□ -0.22
USP39-214ENST00000474572 ABCA6Q8N139 1617 aa13.71□□□□□ -0.22
USP39-214ENST00000474572 RIMBP3Q9UFD9 1639 aa13.71□□□□□ -0.22
USP39-214ENST00000474572 RICTORQ6R327 1708 aa13.7□□□□□ -0.22
USP39-214ENST00000474572 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.7□□□□□ -0.221e-7■□□□□ 9.9
USP39-214ENST00000474572 PPRC1Q5VV67 1664 aaKnown RBP13.69□□□□□ -0.22
USP39-214ENST00000474572 IFT172Q9UG01 1749 aa13.69□□□□□ -0.22
USP39-214ENST00000474572 KANK1Q14678 1352 aa13.69□□□□□ -0.22
USP39-214ENST00000474572 KIAA1210Q9ULL0 1709 aa13.68□□□□□ -0.22
USP39-214ENST00000474572 DCAF11Q8TEB1 546 aa13.68□□□□□ -0.22
USP39-214ENST00000474572 IQGAP1P46940 1657 aa13.67□□□□□ -0.22
USP39-214ENST00000474572 ROCK2O75116 1388 aaKnown RBP13.67□□□□□ -0.22
USP39-214ENST00000474572 DIP2CQ9Y2E4 1556 aa13.66□□□□□ -0.22
USP39-214ENST00000474572 KIF1BO60333 1816 aa13.65□□□□□ -0.22
USP39-214ENST00000474572 CARD11Q9BXL7 1154 aa13.65□□□□□ -0.22
USP39-214ENST00000474572 DIP2BQ9P265 1576 aa13.64□□□□□ -0.23
USP39-214ENST00000474572 ZNF326Q5BKZ1 582 aaKnown RBP13.64□□□□□ -0.23
USP39-214ENST00000474572 STAC3Q96MF2 364 aa13.64□□□□□ -0.23
USP39-214ENST00000474572 ZC3H13Q5T200 1668 aaKnown RBP13.63□□□□□ -0.23
USP39-214ENST00000474572 MYOM2P54296 1465 aa13.63□□□□□ -0.23
USP39-214ENST00000474572 PRKRIP1Q9H875 184 aaPredicted RBP13.63□□□□□ -0.23
USP39-214ENST00000474572 MROH2AA6NES4 1674 aa13.63□□□□□ -0.23
USP39-214ENST00000474572 COL17A1Q9UMD9 1497 aaPredicted RBP13.62□□□□□ -0.23
USP39-214ENST00000474572 KDM2AQ9Y2K7 1162 aa13.62□□□□□ -0.23
USP39-214ENST00000474572 ZMYM4Q5VZL5 1548 aa13.62□□□□□ -0.23
USP39-214ENST00000474572 ADGRB3O60242 1522 aa13.61□□□□□ -0.23
USP39-214ENST00000474572 KIF3BO15066 747 aa13.61□□□□□ -0.23
USP39-214ENST00000474572 CAMSAP1Q5T5Y3 1602 aa13.61□□□□□ -0.23
USP39-214ENST00000474572 ABCC3O15438 1527 aa13.6□□□□□ -0.23
USP39-214ENST00000474572 ST20-MTHFSA0A0A6YYL1 179 aa13.58□□□□□ -0.24
USP39-214ENST00000474572 RGL3Q3MIN7 710 aa13.58□□□□□ -0.24
USP39-214ENST00000474572 NRXN1Q9ULB1 1477 aa13.58□□□□□ -0.24
USP39-214ENST00000474572 UGGT1Q9NYU2 1555 aa13.58□□□□□ -0.24
USP39-214ENST00000474572 PIK3C2BO00750 1634 aa13.57□□□□□ -0.24
USP39-214ENST00000474572 REREQ9P2R6 1566 aa13.57□□□□□ -0.24
USP39-214ENST00000474572 NPATQ14207 1427 aa13.56□□□□□ -0.24
USP39-214ENST00000474572 SIGLEC1Q9BZZ2 1709 aa13.56□□□□□ -0.24
USP39-214ENST00000474572 PPLO60437 1756 aa13.56□□□□□ -0.24
USP39-214ENST00000474572 NBPF1Q3BBV0 1214 aa13.56□□□□□ -0.24
USP39-214ENST00000474572 MYO3AQ8NEV4 1616 aa13.55□□□□□ -0.24
USP39-214ENST00000474572 KTN1Q86UP2 1357 aaKnown RBP13.55□□□□□ -0.24
USP39-214ENST00000474572 ARHGAP31Q2M1Z3 1444 aa13.55□□□□□ -0.24
USP39-214ENST00000474572 TESK2Q96S53 571 aa13.54□□□□□ -0.24
USP39-214ENST00000474572 NOS1P29475 1434 aa13.54□□□□□ -0.24
USP39-214ENST00000474572 SCAF11Q99590 1463 aaKnown RBP13.54□□□□□ -0.24
USP39-214ENST00000474572 SETBP1Q9Y6X0 1596 aa13.54□□□□□ -0.24
USP39-214ENST00000474572 MYT1LQ9UL68 1186 aa13.53□□□□□ -0.24
USP39-214ENST00000474572 CCDC184Q52MB2 194 aa13.52□□□□□ -0.25
USP39-214ENST00000474572 SYNMO15061 1565 aa13.52□□□□□ -0.25
USP39-214ENST00000474572 KIF13AQ9H1H9 1805 aa13.5□□□□□ -0.25
USP39-214ENST00000474572 YEATS2Q9ULM3 1422 aa13.5□□□□□ -0.25
USP39-214ENST00000474572 DISP3Q9P2K9 1392 aa13.5□□□□□ -0.25
USP39-214ENST00000474572 CYB5RLQ6IPT4 315 aa13.5□□□□□ -0.25
USP39-214ENST00000474572 MYOM1P52179 1685 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms