RNA–Protein interactions for RNA: ENST00000471245.1

CKS1B-204, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best)

Gene CKS1B, Length 1,166 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-204ENST00000471245 GRXCR2A6NFK2 248 aa11.36□□□□□ -0.59
CKS1B-204ENST00000471245 TYW1BQ6NUM6 668 aa11.36□□□□□ -0.59
CKS1B-204ENST00000471245 GPR37O15354 613 aa11.35□□□□□ -0.59
CKS1B-204ENST00000471245 KRI1Q8N9T8 703 aaKnown RBP11.35□□□□□ -0.59
CKS1B-204ENST00000471245 EMP3P54852 163 aa11.34□□□□□ -0.59
CKS1B-204ENST00000471245 PPP4R3BQ5MIZ7 849 aa11.34□□□□□ -0.59
CKS1B-204ENST00000471245 ZNF454Q8N9F8 522 aa11.34□□□□□ -0.59
CKS1B-204ENST00000471245 ZDHHC16Q969W1 377 aa11.34□□□□□ -0.59
CKS1B-204ENST00000471245 ERBB3P21860 1342 aa11.34□□□□□ -0.59
CKS1B-204ENST00000471245 DAXXQ9UER7 740 aaPredicted RBP11.32□□□□□ -0.6
CKS1B-204ENST00000471245 EN1Q05925 392 aaPredicted RBP11.3□□□□□ -0.6
CKS1B-204ENST00000471245 BCL2L12Q9HB09 334 aa11.29□□□□□ -0.6
CKS1B-204ENST00000471245 TRIM66O15016 1216 aa11.28□□□□□ -0.6
CKS1B-204ENST00000471245 VARS2Q5ST30 1063 aaKnown RBP11.28□□□□□ -0.6
CKS1B-204ENST00000471245 ZNF687Q8N1G0 1237 aa11.28□□□□□ -0.6
CKS1B-204ENST00000471245 FAM205CA6NFA0 338 aa11.27□□□□□ -0.61
CKS1B-204ENST00000471245 ADAM33Q9BZ11 813 aa11.26□□□□□ -0.61
CKS1B-204ENST00000471245 MINK1Q8N4C8 1332 aaPredicted RBP11.26□□□□□ -0.61
CKS1B-204ENST00000471245 NUTM2FA1L443 756 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 PRIM1P49642 420 aaKnown RBP11.25□□□□□ -0.61
CKS1B-204ENST00000471245 PDE4DQ08499 809 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 MAP2K5Q13163 448 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 C6orf132Q5T0Z8 1188 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 CERKQ8TCT0 537 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 HS3ST6Q96QI5 342 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 ABCC9O60706 1549 aa11.25□□□□□ -0.61
CKS1B-204ENST00000471245 POTEB3A0JP26 581 aa11.24□□□□□ -0.61
CKS1B-204ENST00000471245 PBX2P40425 430 aa11.24□□□□□ -0.61
CKS1B-204ENST00000471245 POTEBQ6S5H4 581 aa11.24□□□□□ -0.61
CKS1B-204ENST00000471245 GPBP1L1Q9HC44 474 aaPredicted RBP11.24□□□□□ -0.61
CKS1B-204ENST00000471245 MAP3K7O43318 606 aa11.23□□□□□ -0.61
CKS1B-204ENST00000471245 HIC1Q14526 733 aa11.23□□□□□ -0.61
CKS1B-204ENST00000471245 KDM4CQ9H3R0 1056 aa11.23□□□□□ -0.61
CKS1B-204ENST00000471245 GNPATO15228 680 aa11.22□□□□□ -0.61
CKS1B-204ENST00000471245 FCHSD2O94868 740 aa11.22□□□□□ -0.61
CKS1B-204ENST00000471245 PTPREP23469 700 aa11.22□□□□□ -0.61
CKS1B-204ENST00000471245 C14orf37Q86TY3 774 aa11.21□□□□□ -0.61
CKS1B-204ENST00000471245 ARHGAP33O14559 1287 aa11.2□□□□□ -0.62
CKS1B-204ENST00000471245 RBM33Q96EV2 1170 aaKnown RBP11.2□□□□□ -0.62
CKS1B-204ENST00000471245 KCNH8Q96L42 1107 aa11.2□□□□□ -0.62
CKS1B-204ENST00000471245 KRTAP3-3Q9BYR6 98 aa11.2□□□□□ -0.62
CKS1B-204ENST00000471245 KRTAP3-2Q9BYR7 98 aa11.2□□□□□ -0.62
CKS1B-204ENST00000471245 IRF6O14896 467 aa11.19□□□□□ -0.62
CKS1B-204ENST00000471245 PTGDRQ13258 359 aa11.19□□□□□ -0.62
CKS1B-204ENST00000471245 CCDC102AQ96A19 550 aa11.19□□□□□ -0.62
CKS1B-204ENST00000471245 NPDC1Q9NQX5 325 aaPredicted RBP11.19□□□□□ -0.62
CKS1B-204ENST00000471245 AMHR2Q16671 573 aa11.18□□□□□ -0.62
CKS1B-204ENST00000471245 TSR1Q2NL82 804 aaKnown RBP11.17□□□□□ -0.62
CKS1B-204ENST00000471245 PPP1R3GB7ZBB8 358 aa11.16□□□□□ -0.62
CKS1B-204ENST00000471245 ONECUT3O60422 494 aaPredicted RBP11.16□□□□□ -0.62
CKS1B-204ENST00000471245 POTEEQ6S8J3 1075 aa11.16□□□□□ -0.62
CKS1B-204ENST00000471245 SLC4A5Q9BY07 1137 aa11.16□□□□□ -0.62
CKS1B-204ENST00000471245 RBM27Q9P2N5 1060 aaKnown RBP11.16□□□□□ -0.62
CKS1B-204ENST00000471245 KCNK17Q96T54 332 aa11.13□□□□□ -0.63
CKS1B-204ENST00000471245 IL27Q8NEV9 243 aa11.12□□□□□ -0.63
CKS1B-204ENST00000471245 CDHR5Q9HBB8 845 aa11.12□□□□□ -0.63
CKS1B-204ENST00000471245 COL9A1P20849 921 aa11.11□□□□□ -0.63
CKS1B-204ENST00000471245 FECHP22830 423 aa11.11□□□□□ -0.63
CKS1B-204ENST00000471245 PRSS12P56730 875 aa11.11□□□□□ -0.63
CKS1B-204ENST00000471245 TTC13Q8NBP0 860 aa11.11□□□□□ -0.63
CKS1B-204ENST00000471245 TK2O00142 265 aa11.1□□□□□ -0.63
CKS1B-204ENST00000471245 PARP9Q8IXQ6 854 aa11.1□□□□□ -0.63
CKS1B-204ENST00000471245 ZBED2Q9BTP6 218 aa11.1□□□□□ -0.63
CKS1B-204ENST00000471245 PSEN2P49810 448 aa11.09□□□□□ -0.63
CKS1B-204ENST00000471245 DDRGK1Q96HY6 314 aa11.09□□□□□ -0.63
CKS1B-204ENST00000471245 CDCA7LQ96GN5 454 aa11.08□□□□□ -0.64
CKS1B-204ENST00000471245 AXIN2Q9Y2T1 843 aa11.08□□□□□ -0.64
CKS1B-204ENST00000471245 FAM117AQ9C073 453 aa11.07□□□□□ -0.64
CKS1B-204ENST00000471245 LSM11P83369 360 aaKnown RBP eCLIP11.06□□□□□ -0.64
CKS1B-204ENST00000471245 TRIM6-TRIM34B2RNG4 842 aa11.05□□□□□ -0.64
CKS1B-204ENST00000471245 DMRTA1Q5VZB9 504 aa11.05□□□□□ -0.64
CKS1B-204ENST00000471245 PACS2Q86VP3 889 aa11.04□□□□□ -0.64
CKS1B-204ENST00000471245 RABGEF1Q9UJ41 708 aa11.04□□□□□ -0.64
CKS1B-204ENST00000471245 VPS9D1Q9Y2B5 631 aa11.04□□□□□ -0.64
CKS1B-204ENST00000471245 PLEKHG3A1L390 1219 aa11.03□□□□□ -0.64
CKS1B-204ENST00000471245 TTLL12Q14166 644 aaPredicted RBP11.03□□□□□ -0.64
CKS1B-204ENST00000471245 CCDC180Q9P1Z9 1646 aa11.02□□□□□ -0.65
CKS1B-204ENST00000471245 PADI6Q6TGC4 694 aa11.01□□□□□ -0.65
CKS1B-204ENST00000471245 TSKSQ9UJT2 592 aa11.01□□□□□ -0.65
CKS1B-204ENST00000471245 OATP04181 439 aa11□□□□□ -0.65
CKS1B-204ENST00000471245 ADGRD1Q6QNK2 874 aa11□□□□□ -0.65
CKS1B-204ENST00000471245 BHMG1C9JSJ3 638 aaPredicted RBP10.99□□□□□ -0.65
CKS1B-204ENST00000471245 PROX2Q3B8N5 592 aa10.99□□□□□ -0.65
CKS1B-204ENST00000471245 GIGYF2Q6Y7W6 1299 aaKnown RBP10.99□□□□□ -0.65
CKS1B-204ENST00000471245 GOPCQ9HD26 462 aa10.99□□□□□ -0.65
CKS1B-204ENST00000471245 FAM198AQ9UFP1 575 aa10.99□□□□□ -0.65
CKS1B-204ENST00000471245 KIAA1468Q9P260 1216 aa10.98□□□□□ -0.65
CKS1B-204ENST00000471245 HRO43593 1189 aa10.97□□□□□ -0.65
CKS1B-204ENST00000471245 CLCN1P35523 988 aa10.97□□□□□ -0.65
CKS1B-204ENST00000471245 ANKRD13DQ6ZTN6 518 aa10.97□□□□□ -0.65
CKS1B-204ENST00000471245 LAPTM4BQ86VI4 370 aa10.97□□□□□ -0.65
CKS1B-204ENST00000471245 RNF166Q96A37 237 aaPredicted RBP10.97□□□□□ -0.65
CKS1B-204ENST00000471245 TMUB1Q9BVT8 246 aa10.97□□□□□ -0.65
CKS1B-204ENST00000471245 ADGRG1Q9Y653 693 aa10.97□□□□□ -0.65
CKS1B-204ENST00000471245 NBPF26B4DH59 902 aa10.96□□□□□ -0.65
CKS1B-204ENST00000471245 TATDN2Q93075 761 aa10.96□□□□□ -0.65
CKS1B-204ENST00000471245 RBM46Q8TBY0 533 aaKnown RBP10.95□□□□□ -0.66
CKS1B-204ENST00000471245 EYA1Q99502 592 aa10.95□□□□□ -0.66
CKS1B-204ENST00000471245 NBPF3Q9H094 633 aa10.95□□□□□ -0.66
CKS1B-204ENST00000471245 MS4A1P11836 297 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms