RNA–Protein interactions for RNA: ENST00000470588.1

SMARCD3-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 2

Gene SMARCD3, Length 1,755 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-206ENST00000470588 KIDINS220Q9ULH0 1771 aa23.93■■□□□ 1.42
SMARCD3-206ENST00000470588 FAM135AQ9P2D6 1515 aa23.92■■□□□ 1.42
SMARCD3-206ENST00000470588 IQGAP3Q86VI3 1631 aa23.92■■□□□ 1.42
SMARCD3-206ENST00000470588 EIF2AK4Q9P2K8 1649 aaKnown RBP23.92■■□□□ 1.42
SMARCD3-206ENST00000470588 TSPOAP1O95153 1857 aa23.9■■□□□ 1.42
SMARCD3-206ENST00000470588 MAGI2Q86UL8 1455 aa23.9■■□□□ 1.42
SMARCD3-206ENST00000470588 MLH3Q9UHC1 1453 aa23.9■■□□□ 1.42
SMARCD3-206ENST00000470588 EIF4G2P78344 907 aaKnown RBP eCLIP23.89■■□□□ 1.42
SMARCD3-206ENST00000470588 KIF13AQ9H1H9 1805 aa23.88■■□□□ 1.41
SMARCD3-206ENST00000470588 YTHDC1Q96MU7 727 aaKnown RBP23.88■■□□□ 1.41
SMARCD3-206ENST00000470588 RICTORQ6R327 1708 aa23.87■■□□□ 1.41
SMARCD3-206ENST00000470588 HSPA5P11021 654 aaKnown RBP23.87■■□□□ 1.41
SMARCD3-206ENST00000470588 NBPF8Q3BBV2 869 aa23.86■■□□□ 1.41
SMARCD3-206ENST00000470588 PPRC1Q5VV67 1664 aaKnown RBP23.86■■□□□ 1.41
SMARCD3-206ENST00000470588 DHX29Q7Z478 1369 aaKnown RBP23.86■■□□□ 1.41
SMARCD3-206ENST00000470588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.86■■□□□ 1.41
SMARCD3-206ENST00000470588 DEPDC5O75140 1603 aa23.85■■□□□ 1.41
SMARCD3-206ENST00000470588 KANK1Q14678 1352 aa23.82■■□□□ 1.4
SMARCD3-206ENST00000470588 A2MP01023 1474 aa23.82■■□□□ 1.4
SMARCD3-206ENST00000470588 SCAF1Q9H7N4 1312 aaKnown RBP23.81■■□□□ 1.4
SMARCD3-206ENST00000470588 ABCA6Q8N139 1617 aa23.8■■□□□ 1.4
SMARCD3-206ENST00000470588 RAPGEF3O95398 923 aa23.78■■□□□ 1.4
SMARCD3-206ENST00000470588 ZMYM4Q5VZL5 1548 aa23.76■■□□□ 1.39
SMARCD3-206ENST00000470588 KIF3BO15066 747 aa23.76■■□□□ 1.39
SMARCD3-206ENST00000470588 FRMPD1Q5SYB0 1578 aa23.76■■□□□ 1.39
SMARCD3-206ENST00000470588 PRDM15P57071 1507 aaPredicted RBP23.76■■□□□ 1.39
SMARCD3-206ENST00000470588 DIP2CQ9Y2E4 1556 aa23.75■■□□□ 1.39
SMARCD3-206ENST00000470588 RNF17Q9BXT8 1623 aaKnown RBP23.74■■□□□ 1.39
SMARCD3-206ENST00000470588 BCORL1Q5H9F3 1711 aa23.74■■□□□ 1.39
SMARCD3-206ENST00000470588 UHRF1BP1Q6BDS2 1440 aa23.74■■□□□ 1.39
SMARCD3-206ENST00000470588 ANP32CO43423 234 aa23.74■■□□□ 1.39
SMARCD3-206ENST00000470588 TET3O43151 1660 aa23.74■■□□□ 1.39
SMARCD3-206ENST00000470588 VWDEQ8N2E2 1590 aa23.72■■□□□ 1.39
SMARCD3-206ENST00000470588 SPATA31E1Q6ZUB1 1445 aa23.71■■□□□ 1.39
SMARCD3-206ENST00000470588 WASHC2AQ641Q2 1341 aa23.71■■□□□ 1.39
SMARCD3-206ENST00000470588 MROH1Q8NDA8 1641 aa23.7■■□□□ 1.39
SMARCD3-206ENST00000470588 CCER2I3L3R5 266 aa23.7■■□□□ 1.39
SMARCD3-206ENST00000470588 CCDC144AA2RUR9 1427 aa23.68■■□□□ 1.38
SMARCD3-206ENST00000470588 E9PCH4 1651 aa23.68■■□□□ 1.38
SMARCD3-206ENST00000470588 ATP10AO60312 1499 aa23.66■■□□□ 1.38
SMARCD3-206ENST00000470588 PLA2R1Q13018 1463 aa23.65■■□□□ 1.38
SMARCD3-206ENST00000470588 CCDC7Q96M83 1385 aa23.64■■□□□ 1.37
SMARCD3-206ENST00000470588 SPHKAPQ2M3C7 1700 aa23.64■■□□□ 1.37
SMARCD3-206ENST00000470588 YEATS2Q9ULM3 1422 aa23.63■■□□□ 1.37
SMARCD3-206ENST00000470588 LMTK2Q8IWU2 1503 aa23.63■■□□□ 1.37
SMARCD3-206ENST00000470588 CEP152O94986 1710 aa23.63■■□□□ 1.37
SMARCD3-206ENST00000470588 ZNF326Q5BKZ1 582 aaKnown RBP23.63■■□□□ 1.37
SMARCD3-206ENST00000470588 RALGAPBQ86X10 1494 aa23.62■■□□□ 1.37
SMARCD3-206ENST00000470588 DCAF11Q8TEB1 546 aa23.62■■□□□ 1.37
SMARCD3-206ENST00000470588 GTF3C3Q9Y5Q9 886 aa23.62■■□□□ 1.37
SMARCD3-206ENST00000470588 C11orf95C9JLR9 678 aaPredicted RBP23.61■■□□□ 1.37
SMARCD3-206ENST00000470588 EFCAB6Q5THR3 1501 aa23.61■■□□□ 1.37
SMARCD3-206ENST00000470588 KDM2AQ9Y2K7 1162 aa23.6■■□□□ 1.37
SMARCD3-206ENST00000470588 TRPM2O94759 1503 aa23.6■■□□□ 1.37
SMARCD3-206ENST00000470588 REREQ9P2R6 1566 aa23.59■■□□□ 1.37
SMARCD3-206ENST00000470588 USP47Q96K76 1375 aa23.58■■□□□ 1.37
SMARCD3-206ENST00000470588 ZC3H13Q5T200 1668 aaKnown RBP23.58■■□□□ 1.36
SMARCD3-206ENST00000470588 GGT6Q6P531 493 aa23.57■■□□□ 1.36
SMARCD3-206ENST00000470588 CNTLNQ9NXG0 1405 aa23.56■■□□□ 1.36
SMARCD3-206ENST00000470588 ARID4BQ4LE39 1312 aaPredicted RBP23.55■■□□□ 1.36
SMARCD3-206ENST00000470588 PTPRTO14522 1441 aa23.55■■□□□ 1.36
SMARCD3-206ENST00000470588 ARHGEF40Q8TER5 1519 aa23.55■■□□□ 1.36
SMARCD3-206ENST00000470588 DNAJC5Q9H3Z4 198 aa23.55■■□□□ 1.36
SMARCD3-206ENST00000470588 CARD11Q9BXL7 1154 aa23.54■■□□□ 1.36
SMARCD3-206ENST00000470588 POLR1AO95602 1720 aaPredicted RBP23.54■■□□□ 1.36
SMARCD3-206ENST00000470588 KIF7Q2M1P5 1343 aa23.54■■□□□ 1.36
SMARCD3-206ENST00000470588 ABCC3O15438 1527 aa23.53■■□□□ 1.36
SMARCD3-206ENST00000470588 WASHC2CQ9Y4E1 1318 aa23.52■■□□□ 1.36
SMARCD3-206ENST00000470588 CAMSAP1Q5T5Y3 1602 aa23.52■■□□□ 1.36
SMARCD3-206ENST00000470588 RGL3Q3MIN7 710 aa23.51■■□□□ 1.35
SMARCD3-206ENST00000470588 AGLP35573 1532 aa23.51■■□□□ 1.35
SMARCD3-206ENST00000470588 PRAG1Q86YV5 1406 aa23.5■■□□□ 1.35
SMARCD3-206ENST00000470588 COL17A1Q9UMD9 1497 aaPredicted RBP23.5■■□□□ 1.35
SMARCD3-206ENST00000470588 TRHP20396 242 aaPredicted RBP23.5■■□□□ 1.35
SMARCD3-206ENST00000470588 CLTCL1P53675 1640 aa23.49■■□□□ 1.35
SMARCD3-206ENST00000470588 STAC3Q96MF2 364 aa23.46■■□□□ 1.35
SMARCD3-206ENST00000470588 ROCK2O75116 1388 aaKnown RBP23.45■■□□□ 1.34
SMARCD3-206ENST00000470588 KIF1BO60333 1816 aa23.45■■□□□ 1.34
SMARCD3-206ENST00000470588 NEURL4Q96JN8 1562 aa23.43■■□□□ 1.34
SMARCD3-206ENST00000470588 TRPM1Q7Z4N2 1603 aa23.43■■□□□ 1.34
SMARCD3-206ENST00000470588 NPATQ14207 1427 aa23.43■■□□□ 1.34
SMARCD3-206ENST00000470588 GPRASP1Q5JY77 1395 aa23.42■■□□□ 1.34
SMARCD3-206ENST00000470588 PPP6R1Q9UPN7 881 aa23.42■■□□□ 1.34
SMARCD3-206ENST00000470588 ARHGAP31Q2M1Z3 1444 aa23.41■■□□□ 1.34
SMARCD3-206ENST00000470588 ST20-MTHFSA0A0A6YYL1 179 aa23.4■■□□□ 1.34
SMARCD3-206ENST00000470588 PRKRIP1Q9H875 184 aaPredicted RBP23.38■■□□□ 1.33
SMARCD3-206ENST00000470588 CFAP65Q6ZU64 1925 aaKnown RBP23.38■■□□□ 1.33
SMARCD3-206ENST00000470588 LAMC1P11047 1609 aa23.38■■□□□ 1.33
SMARCD3-206ENST00000470588 NBPF1Q3BBV0 1214 aa23.36■■□□□ 1.33
SMARCD3-206ENST00000470588 UGGT1Q9NYU2 1555 aa23.35■■□□□ 1.33
SMARCD3-206ENST00000470588 SIGLEC1Q9BZZ2 1709 aa23.34■■□□□ 1.33
SMARCD3-206ENST00000470588 CLTCQ00610 1675 aaKnown RBP23.33■■□□□ 1.33
SMARCD3-206ENST00000470588 NOS1P29475 1434 aa23.33■■□□□ 1.33
SMARCD3-206ENST00000470588 PREX1Q8TCU6 1659 aa23.32■■□□□ 1.32
SMARCD3-206ENST00000470588 POLR3GLQ9BT43 218 aa23.3■■□□□ 1.32
SMARCD3-206ENST00000470588 ADGRB3O60242 1522 aa23.3■■□□□ 1.32
SMARCD3-206ENST00000470588 MROH2AA6NES4 1674 aa23.3■■□□□ 1.32
SMARCD3-206ENST00000470588 PIK3C2BO00750 1634 aa23.29■■□□□ 1.32
SMARCD3-206ENST00000470588 SYNMO15061 1565 aa23.29■■□□□ 1.32
SMARCD3-206ENST00000470588 ESF1Q9H501 851 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms