RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 PLA2R1Q13018 1463 aa26.13■■□□□ 1.77
VIM-203ENST00000469543 RALGAPBQ86X10 1494 aa26.13■■□□□ 1.77
VIM-203ENST00000469543 POLR1AO95602 1720 aaPredicted RBP26.13■■□□□ 1.77
VIM-203ENST00000469543 CCDC144AA2RUR9 1427 aa26.13■■□□□ 1.77
VIM-203ENST00000469543 AFAP1Q8N556 730 aa26.12■■□□□ 1.77
VIM-203ENST00000469543 ZBED9Q6R2W3 1325 aa26.08■■□□□ 1.77
VIM-203ENST00000469543 EFCAB2Q5VUJ9 269 aa26.07■■□□□ 1.76
VIM-203ENST00000469543 TRAPPC8Q9Y2L5 1435 aa26.06■■□□□ 1.76
VIM-203ENST00000469543 PLCH2O75038 1416 aa26.03■■□□□ 1.76
VIM-203ENST00000469543 MYO5CQ9NQX4 1742 aa26.03■■□□□ 1.76
VIM-203ENST00000469543 TMC1Q8TDI8 760 aa26.02■■□□□ 1.76
VIM-203ENST00000469543 PRAG1Q86YV5 1406 aa26.01■■□□□ 1.76
VIM-203ENST00000469543 ARID4BQ4LE39 1312 aaPredicted RBP26.01■■□□□ 1.75
VIM-203ENST00000469543 PNISRQ8TF01 805 aaKnown RBP26.01■■□□□ 1.75
VIM-203ENST00000469543 ZCCHC11Q5TAX3 1644 aaKnown RBP26■■□□□ 1.75
VIM-203ENST00000469543 RBM19Q9Y4C8 960 aaKnown RBP25.99■■□□□ 1.75
VIM-203ENST00000469543 A2MP01023 1474 aa25.99■■□□□ 1.75
VIM-203ENST00000469543 B4GALNT3Q6L9W6 998 aa25.95■■□□□ 1.74
VIM-203ENST00000469543 MYT1LQ9UL68 1186 aa25.95■■□□□ 1.74
VIM-203ENST00000469543 SALL2Q9Y467 1007 aaPredicted RBP25.95■■□□□ 1.74
VIM-203ENST00000469543 SPAG9O60271 1321 aaKnown RBP25.94■■□□□ 1.74
VIM-203ENST00000469543 MAST1Q9Y2H9 1570 aa25.94■■□□□ 1.74
VIM-203ENST00000469543 CLASP1Q7Z460 1538 aa25.94■■□□□ 1.74
VIM-203ENST00000469543 UNC13BO14795 1591 aa25.93■■□□□ 1.74
VIM-203ENST00000469543 TESK2Q96S53 571 aa25.91■■□□□ 1.74
VIM-203ENST00000469543 DUOX2Q9NRD8 1548 aa25.91■■□□□ 1.74
VIM-203ENST00000469543 DISP3Q9P2K9 1392 aa25.9■■□□□ 1.74
VIM-203ENST00000469543 CC2D1BQ5T0F9 858 aaKnown RBP25.9■■□□□ 1.74
VIM-203ENST00000469543 TRPM1Q7Z4N2 1603 aa25.89■■□□□ 1.74
VIM-203ENST00000469543 PLXNC1O60486 1568 aa25.89■■□□□ 1.73
VIM-203ENST00000469543 PER1O15534 1290 aaPredicted RBP25.87■■□□□ 1.73
VIM-203ENST00000469543 IQGAP3Q86VI3 1631 aa25.87■■□□□ 1.73
VIM-203ENST00000469543 ABCC1P33527 1531 aa25.86■■□□□ 1.73
VIM-203ENST00000469543 ERBINQ96RT1 1412 aa25.85■■□□□ 1.73
VIM-203ENST00000469543 PPP4R2Q9NY27 417 aa25.85■■□□□ 1.73
VIM-203ENST00000469543 MYBBP1AQ9BQG0 1328 aaKnown RBP25.84■■□□□ 1.73
VIM-203ENST00000469543 PANK3Q9H999 370 aa25.84■■□□□ 1.73
VIM-203ENST00000469543 UHRF1BP1LA0JNW5 1464 aa25.84■■□□□ 1.73
VIM-203ENST00000469543 KIF3BO15066 747 aa25.82■■□□□ 1.72
VIM-203ENST00000469543 RALBP1Q15311 655 aa25.81■■□□□ 1.72
VIM-203ENST00000469543 GPRASP1Q5JY77 1395 aa25.81■■□□□ 1.72
VIM-203ENST00000469543 NUDCQ9Y266 331 aa25.81■■□□□ 1.72
VIM-203ENST00000469543 MAGI2Q86UL8 1455 aa25.79■■□□□ 1.72
VIM-203ENST00000469543 SCAPERQ9BY12 1400 aa25.78■■□□□ 1.72
VIM-203ENST00000469543 SMG6Q86US8 1419 aaKnown RBP25.77■■□□□ 1.72
VIM-203ENST00000469543 FANCAO15360 1455 aa25.75■■□□□ 1.71
VIM-203ENST00000469543 ATP10AO60312 1499 aa25.75■■□□□ 1.71
VIM-203ENST00000469543 BRD4O60885 1362 aaPredicted RBP25.74■■□□□ 1.71
VIM-203ENST00000469543 KTN1Q86UP2 1357 aaKnown RBP25.74■■□□□ 1.71
VIM-203ENST00000469543 LRPPRCP42704 1394 aaKnown RBP25.74■■□□□ 1.71
VIM-203ENST00000469543 WDR7Q9Y4E6 1490 aa25.73■■□□□ 1.71
VIM-203ENST00000469543 TMF1P82094 1093 aa25.73■■□□□ 1.71
VIM-203ENST00000469543 E9PCH4 1651 aa25.73■■□□□ 1.71
VIM-203ENST00000469543 NLRP13Q86W25 1043 aa25.72■■□□□ 1.71
VIM-203ENST00000469543 ZFYVE16Q7Z3T8 1539 aa25.72■■□□□ 1.71
VIM-203ENST00000469543 PRDM15P57071 1507 aaPredicted RBP25.72■■□□□ 1.71
VIM-203ENST00000469543 PARD3Q8TEW0 1356 aa25.72■■□□□ 1.71
VIM-203ENST00000469543 COL17A1Q9UMD9 1497 aaPredicted RBP25.71■■□□□ 1.71
VIM-203ENST00000469543 ERICH6BQ5W0A0 696 aa25.71■■□□□ 1.71
VIM-203ENST00000469543 CDCA7LQ96GN5 454 aa25.68■■□□□ 1.7
VIM-203ENST00000469543 RTEL1-TNFRSF6BF6WH68 1400 aa25.66■■□□□ 1.7
VIM-203ENST00000469543 ASXL2Q76L83 1435 aa25.66■■□□□ 1.7
VIM-203ENST00000469543 ADGRL1O94910 1474 aa25.66■■□□□ 1.7
VIM-203ENST00000469543 UGGT1Q9NYU2 1555 aa25.64■■□□□ 1.7
VIM-203ENST00000469543 CFAP70Q5T0N1 1121 aa25.63■■□□□ 1.69
VIM-203ENST00000469543 MSH5O43196 834 aa25.63■■□□□ 1.69
VIM-203ENST00000469543 ATP7AQ04656 1500 aa25.62■■□□□ 1.69
VIM-203ENST00000469543 RNF123Q5XPI4 1314 aa25.61■■□□□ 1.69
VIM-203ENST00000469543 CLTCL1P53675 1640 aa25.61■■□□□ 1.69
VIM-203ENST00000469543 ADGRF5Q8IZF2 1346 aa25.6■■□□□ 1.69
VIM-203ENST00000469543 PTPRTO14522 1441 aa25.59■■□□□ 1.69
VIM-203ENST00000469543 EIF2AK4Q9P2K8 1649 aaKnown RBP25.58■■□□□ 1.69
VIM-203ENST00000469543 KANK1Q14678 1352 aa25.58■■□□□ 1.69
VIM-203ENST00000469543 ANP32EQ9BTT0 268 aa25.58■■□□□ 1.69
VIM-203ENST00000469543 CCDC136Q96JN2 1154 aa25.58■■□□□ 1.68
VIM-203ENST00000469543 TRPM2O94759 1503 aa25.58■■□□□ 1.68
VIM-203ENST00000469543 CHGAP10645 457 aaKnown RBP25.57■■□□□ 1.68
VIM-203ENST00000469543 MADDQ8WXG6 1647 aa25.57■■□□□ 1.68
VIM-203ENST00000469543 GGT6Q6P531 493 aa25.56■■□□□ 1.68
VIM-203ENST00000469543 ABCA9Q8IUA7 1624 aa25.56■■□□□ 1.68
VIM-203ENST00000469543 ADAMTS8Q9UP79 889 aa25.56■■□□□ 1.68
VIM-203ENST00000469543 KNSTRNQ9Y448 316 aa25.56■■□□□ 1.68
VIM-203ENST00000469543 ARAP3Q8WWN8 1544 aa25.55■■□□□ 1.68
VIM-203ENST00000469543 LAMC1P11047 1609 aa25.55■■□□□ 1.68
VIM-203ENST00000469543 SPHKAPQ2M3C7 1700 aa25.54■■□□□ 1.68
VIM-203ENST00000469543 NPM1P06748 294 aaKnown RBP eCLIP25.54■■□□□ 1.68
VIM-203ENST00000469543 SENP3Q9H4L4 574 aaPredicted RBP25.53■■□□□ 1.68
VIM-203ENST00000469543 OSCARQ8IYS5 282 aa25.53■■□□□ 1.68
VIM-203ENST00000469543 INO80Q9ULG1 1556 aaPredicted RBP25.53■■□□□ 1.68
VIM-203ENST00000469543 WASHC2CQ9Y4E1 1318 aa25.52■■□□□ 1.68
VIM-203ENST00000469543 AMER1Q5JTC6 1135 aaPredicted RBP25.51■■□□□ 1.67
VIM-203ENST00000469543 RCAN3Q9UKA8 241 aa25.51■■□□□ 1.67
VIM-203ENST00000469543 DEPDC5O75140 1603 aa25.51■■□□□ 1.67
VIM-203ENST00000469543 RNF17Q9BXT8 1623 aaKnown RBP25.51■■□□□ 1.67
VIM-203ENST00000469543 CFAP65Q6ZU64 1925 aaKnown RBP25.51■■□□□ 1.67
VIM-203ENST00000469543 PLIN1O60240 522 aa25.5■■□□□ 1.67
VIM-203ENST00000469543 EXOC6Q8TAG9 804 aa25.5■■□□□ 1.67
VIM-203ENST00000469543 PPP2R1AP30153 589 aa25.5■■□□□ 1.67
VIM-203ENST00000469543 SCAF11Q99590 1463 aaKnown RBP25.49■■□□□ 1.67
VIM-203ENST00000469543 RAPGEF3O95398 923 aa25.48■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms