RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 SMARCA4P51532 1647 aa10.07□□□□□ -0.8
SYNE1-219ENST00000469439 ADAM33Q9BZ11 813 aa10.06□□□□□ -0.8
SYNE1-219ENST00000469439 EIF4G1Q04637 1599 aaKnown RBP10.05□□□□□ -0.8
SYNE1-219ENST00000469439 DPYSL4O14531 572 aa10.05□□□□□ -0.8
SYNE1-219ENST00000469439 PTPREP23469 700 aa10.05□□□□□ -0.8
SYNE1-219ENST00000469439 SLC4A5Q9BY07 1137 aa10.04□□□□□ -0.8
SYNE1-219ENST00000469439 VPS9D1Q9Y2B5 631 aa10.04□□□□□ -0.8
SYNE1-219ENST00000469439 PCDHGA10Q9Y5H3 936 aa10.04□□□□□ -0.8
SYNE1-219ENST00000469439 MROH2BQ7Z745 1585 aa10.03□□□□□ -0.8
SYNE1-219ENST00000469439 PHF14O94880 888 aa10.02□□□□□ -0.81
SYNE1-219ENST00000469439 PEG3Q9GZU2 1588 aa10.01□□□□□ -0.81
SYNE1-219ENST00000469439 ZBED2Q9BTP6 218 aa10.01□□□□□ -0.81
SYNE1-219ENST00000469439 NCAPD3P42695 1498 aa10.01□□□□□ -0.81
SYNE1-219ENST00000469439 ATAD2BQ9ULI0 1458 aa10□□□□□ -0.81
SYNE1-219ENST00000469439 FBXW7Q969H0 707 aa10□□□□□ -0.81
SYNE1-219ENST00000469439 TYW1BQ6NUM6 668 aa9.99□□□□□ -0.81
SYNE1-219ENST00000469439 BAZ1BQ9UIG0 1483 aaKnown RBP9.98□□□□□ -0.81
SYNE1-219ENST00000469439 PPP1R3GB7ZBB8 358 aa9.97□□□□□ -0.81
SYNE1-219ENST00000469439 BHMG1C9JSJ3 638 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-219ENST00000469439 PDIA6Q15084 440 aa9.97□□□□□ -0.81
SYNE1-219ENST00000469439 EPAS1Q99814 870 aa9.96□□□□□ -0.82
SYNE1-219ENST00000469439 HCSTQ9UBK5 93 aa9.96□□□□□ -0.82
SYNE1-219ENST00000469439 HMGXB3Q12766 1538 aa9.96□□□□□ -0.82
SYNE1-219ENST00000469439 E2F4Q16254 413 aa9.95□□□□□ -0.82
SYNE1-219ENST00000469439 STAC3Q96MF2 364 aa9.95□□□□□ -0.82
SYNE1-219ENST00000469439 COL9A1P20849 921 aa9.94□□□□□ -0.82
SYNE1-219ENST00000469439 KCTD12Q96CX2 325 aaKnown RBP9.94□□□□□ -0.82
SYNE1-219ENST00000469439 ARIH1Q9Y4X5 557 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-219ENST00000469439 WDR70Q9NW82 654 aa9.93□□□□□ -0.82
SYNE1-219ENST00000469439 TOP2AP11388 1531 aaKnown RBP9.92□□□□□ -0.82
SYNE1-219ENST00000469439 SPDYE16A6NNV3 312 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-219ENST00000469439 DDX12PQ92771 950 aa9.92□□□□□ -0.82
SYNE1-219ENST00000469439 CC2D2AQ9P2K1 1620 aa9.91□□□□□ -0.82
SYNE1-219ENST00000469439 PROX2Q3B8N5 592 aa9.9□□□□□ -0.82
SYNE1-219ENST00000469439 C6orf132Q5T0Z8 1188 aa9.9□□□□□ -0.82
SYNE1-219ENST00000469439 NBPF3Q9H094 633 aa9.9□□□□□ -0.82
SYNE1-219ENST00000469439 MRPL50Q8N5N7 158 aaKnown RBP9.89□□□□□ -0.83
SYNE1-219ENST00000469439 RABGEF1Q9UJ41 708 aa9.89□□□□□ -0.83
SYNE1-219ENST00000469439 WIZO95785 1651 aa9.89□□□□□ -0.83
SYNE1-219ENST00000469439 EN1Q05925 392 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-219ENST00000469439 NBR1Q14596 966 aa9.88□□□□□ -0.83
SYNE1-219ENST00000469439 RBM33Q96EV2 1170 aaKnown RBP9.87□□□□□ -0.83
SYNE1-219ENST00000469439 THSD4Q6ZMP0 1018 aa9.86□□□□□ -0.83
SYNE1-219ENST00000469439 TSHZ2Q9NRE2 1034 aa9.86□□□□□ -0.83
SYNE1-219ENST00000469439 GOLGA8CPA6NN73 597 aa9.84□□□□□ -0.83
SYNE1-219ENST00000469439 ONECUT3O60422 494 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-219ENST00000469439 TSR1Q2NL82 804 aaKnown RBP9.84□□□□□ -0.83
SYNE1-219ENST00000469439 WNT2BQ93097 391 aa9.84□□□□□ -0.83
SYNE1-219ENST00000469439 PLA2G2EQ9NZK7 142 aa9.84□□□□□ -0.83
SYNE1-219ENST00000469439 MAP3K7O43318 606 aa9.83□□□□□ -0.84
SYNE1-219ENST00000469439 TRIM6-TRIM34B2RNG4 842 aa9.82□□□□□ -0.84
SYNE1-219ENST00000469439 PRIM1P49642 420 aaKnown RBP9.82□□□□□ -0.84
SYNE1-219ENST00000469439 PTPN5P54829 565 aa9.82□□□□□ -0.84
SYNE1-219ENST00000469439 LAPTM4BQ86VI4 370 aa9.81□□□□□ -0.84
SYNE1-219ENST00000469439 KIAA1468Q9P260 1216 aa9.81□□□□□ -0.84
SYNE1-219ENST00000469439 CCDC88BA6NC98 1476 aa9.79□□□□□ -0.84
SYNE1-219ENST00000469439 GRXCR2A6NFK2 248 aa9.79□□□□□ -0.84
SYNE1-219ENST00000469439 ANKK1Q8NFD2 765 aa9.78□□□□□ -0.84
SYNE1-219ENST00000469439 OSBPP22059 807 aa9.77□□□□□ -0.85
SYNE1-219ENST00000469439 SEPT9Q9UHD8 586 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-219ENST00000469439 TSKSQ9UJT2 592 aa9.77□□□□□ -0.85
SYNE1-219ENST00000469439 KCNV2Q8TDN2 545 aa9.76□□□□□ -0.85
SYNE1-219ENST00000469439 ARHGEF1Q92888 912 aaKnown RBP9.76□□□□□ -0.85
SYNE1-219ENST00000469439 ZFRQ96KR1 1074 aaKnown RBP9.76□□□□□ -0.85
SYNE1-219ENST00000469439 CADPSQ9ULU8 1353 aa9.75□□□□□ -0.85
SYNE1-219ENST00000469439 CERKQ8TCT0 537 aa9.75□□□□□ -0.85
SYNE1-219ENST00000469439 CDHR5Q9HBB8 845 aa9.75□□□□□ -0.85
SYNE1-219ENST00000469439 SOWAHBA6NEL2 793 aa9.74□□□□□ -0.85
SYNE1-219ENST00000469439 BCAMP50895 628 aa9.74□□□□□ -0.85
SYNE1-219ENST00000469439 FAM98CQ17RN3 349 aaKnown RBP9.74□□□□□ -0.85
SYNE1-219ENST00000469439 CDCA7LQ96GN5 454 aa9.73□□□□□ -0.85
SYNE1-219ENST00000469439 PRSS12P56730 875 aa9.72□□□□□ -0.85
SYNE1-219ENST00000469439 PACS2Q86VP3 889 aa9.72□□□□□ -0.85
SYNE1-219ENST00000469439 PLCB2Q00722 1185 aa9.71□□□□□ -0.86
SYNE1-219ENST00000469439 FAM198AQ9UFP1 575 aa9.71□□□□□ -0.86
SYNE1-219ENST00000469439 PDS5BQ9NTI5 1447 aa9.71□□□□□ -0.86
SYNE1-219ENST00000469439 CFTRP13569 1480 aa9.71□□□□□ -0.86
SYNE1-219ENST00000469439 IFFO2Q5TF58 517 aa9.7□□□□□ -0.86
SYNE1-219ENST00000469439 RBM27Q9P2N5 1060 aaKnown RBP9.7□□□□□ -0.86
SYNE1-219ENST00000469439 LAMC3Q9Y6N6 1575 aa9.68□□□□□ -0.86
SYNE1-219ENST00000469439 MLLT3P42568 568 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-219ENST00000469439 P3H3Q8IVL6 736 aa9.68□□□□□ -0.86
SYNE1-219ENST00000469439 C3orf80F5H4A9 247 aa9.67□□□□□ -0.86
SYNE1-219ENST00000469439 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-219ENST00000469439 NBPF26B4DH59 902 aa9.66□□□□□ -0.86
SYNE1-219ENST00000469439 NYAP1Q6ZVC0 841 aa9.66□□□□□ -0.86
SYNE1-219ENST00000469439 LRCH3Q96II8 777 aa9.66□□□□□ -0.86
SYNE1-219ENST00000469439 NPDC1Q9NQX5 325 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-219ENST00000469439 WBP1LQ9NX94 342 aa9.66□□□□□ -0.86
SYNE1-219ENST00000469439 SMAPO00193 183 aa9.65□□□□□ -0.86
SYNE1-219ENST00000469439 TTC13Q8NBP0 860 aa9.65□□□□□ -0.86
SYNE1-219ENST00000469439 TATDN2Q93075 761 aa9.65□□□□□ -0.86
SYNE1-219ENST00000469439 ITGBL1O95965 494 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-219ENST00000469439 TSR3Q9UJK0 312 aaKnown RBP9.64□□□□□ -0.87
SYNE1-219ENST00000469439 PNMA3Q9UL41 463 aa9.64□□□□□ -0.87
SYNE1-219ENST00000469439 HPS5Q9UPZ3 1129 aa9.64□□□□□ -0.87
SYNE1-219ENST00000469439 ABCC8Q09428 1581 aa9.63□□□□□ -0.87
SYNE1-219ENST00000469439 PADI6Q6TGC4 694 aa9.63□□□□□ -0.87
SYNE1-219ENST00000469439 A0A0G2JS52 829 aa9.61□□□□□ -0.87
SYNE1-219ENST00000469439 NUDT18Q6ZVK8 323 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms