RNA–Protein interactions for RNA: ENST00000468872.5

LSM5-209, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM5, Length 636 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-209ENST00000468872 VPS9D1Q9Y2B5 631 aa12.58□□□□□ -0.4
LSM5-209ENST00000468872 SLC4A5Q9BY07 1137 aa12.56□□□□□ -0.4
LSM5-209ENST00000468872 ZBED2Q9BTP6 218 aa12.55□□□□□ -0.4
LSM5-209ENST00000468872 PPP1R3GB7ZBB8 358 aa12.53□□□□□ -0.4
LSM5-209ENST00000468872 COL9A1P20849 921 aa12.52□□□□□ -0.41
LSM5-209ENST00000468872 NBR1Q14596 966 aa12.52□□□□□ -0.41
LSM5-209ENST00000468872 RBM33Q96EV2 1170 aaKnown RBP12.51□□□□□ -0.41
LSM5-209ENST00000468872 C6orf132Q5T0Z8 1188 aa12.5□□□□□ -0.41
LSM5-209ENST00000468872 KCNV2Q8TDN2 545 aa12.5□□□□□ -0.41
LSM5-209ENST00000468872 STAC3Q96MF2 364 aa12.5□□□□□ -0.41
LSM5-209ENST00000468872 EN1Q05925 392 aaPredicted RBP12.48□□□□□ -0.41
LSM5-209ENST00000468872 BHMG1C9JSJ3 638 aaPredicted RBP12.47□□□□□ -0.41
LSM5-209ENST00000468872 ARHGEF1Q92888 912 aaKnown RBP12.47□□□□□ -0.41
LSM5-209ENST00000468872 GRXCR2A6NFK2 248 aa12.46□□□□□ -0.41
LSM5-209ENST00000468872 PROX2Q3B8N5 592 aa12.45□□□□□ -0.42
LSM5-209ENST00000468872 MAP3K7O43318 606 aa12.44□□□□□ -0.42
LSM5-209ENST00000468872 PRIM1P49642 420 aaKnown RBP12.43□□□□□ -0.42
LSM5-209ENST00000468872 TSR1Q2NL82 804 aaKnown RBP12.43□□□□□ -0.42
LSM5-209ENST00000468872 HAP1P54257 671 aaPredicted RBP12.42□□□□□ -0.42
LSM5-209ENST00000468872 OSBPP22059 807 aa12.41□□□□□ -0.42
LSM5-209ENST00000468872 MRPL50Q8N5N7 158 aaKnown RBP12.41□□□□□ -0.42
LSM5-209ENST00000468872 KCTD12Q96CX2 325 aaKnown RBP12.41□□□□□ -0.42
LSM5-209ENST00000468872 NBPF3Q9H094 633 aa12.41□□□□□ -0.42
LSM5-209ENST00000468872 RABGEF1Q9UJ41 708 aa12.41□□□□□ -0.42
LSM5-209ENST00000468872 P3H3Q8IVL6 736 aa12.4□□□□□ -0.42
LSM5-209ENST00000468872 HCSTQ9UBK5 93 aa12.38□□□□□ -0.43
LSM5-209ENST00000468872 KIAA1468Q9P260 1216 aa12.37□□□□□ -0.43
LSM5-209ENST00000468872 TRIM6-TRIM34B2RNG4 842 aa12.36□□□□□ -0.43
LSM5-209ENST00000468872 ONECUT3O60422 494 aaPredicted RBP12.36□□□□□ -0.43
LSM5-209ENST00000468872 GOLGA8CPA6NN73 597 aa12.35□□□□□ -0.43
LSM5-209ENST00000468872 MLLT3P42568 568 aaPredicted RBP12.35□□□□□ -0.43
LSM5-209ENST00000468872 WNT2BQ93097 391 aa12.33□□□□□ -0.44
LSM5-209ENST00000468872 CDHR5Q9HBB8 845 aa12.32□□□□□ -0.44
LSM5-209ENST00000468872 LAPTM4BQ86VI4 370 aa12.31□□□□□ -0.44
LSM5-209ENST00000468872 CERKQ8TCT0 537 aa12.31□□□□□ -0.44
LSM5-209ENST00000468872 TSKSQ9UJT2 592 aa12.31□□□□□ -0.44
LSM5-209ENST00000468872 THSD4Q6ZMP0 1018 aa12.3□□□□□ -0.44
LSM5-209ENST00000468872 CDCA7LQ96GN5 454 aa12.3□□□□□ -0.44
LSM5-209ENST00000468872 KDM2AQ9Y2K7 1162 aa12.3□□□□□ -0.44
LSM5-209ENST00000468872 PRSS12P56730 875 aa12.29□□□□□ -0.44
LSM5-209ENST00000468872 SEPT9Q9UHD8 586 aaPredicted RBP12.29□□□□□ -0.44
LSM5-209ENST00000468872 PTPN5P54829 565 aa12.28□□□□□ -0.44
LSM5-209ENST00000468872 SEMA3EO15041 775 aa12.27□□□□□ -0.45
LSM5-209ENST00000468872 PACS2Q86VP3 889 aa12.27□□□□□ -0.45
LSM5-209ENST00000468872 ANKK1Q8NFD2 765 aa12.25□□□□□ -0.45
LSM5-209ENST00000468872 ZFRQ96KR1 1074 aaKnown RBP12.25□□□□□ -0.45
LSM5-209ENST00000468872 NPDC1Q9NQX5 325 aaPredicted RBP12.25□□□□□ -0.45
LSM5-209ENST00000468872 FAM198AQ9UFP1 575 aa12.25□□□□□ -0.45
LSM5-209ENST00000468872 FAM98CQ17RN3 349 aaKnown RBP12.24□□□□□ -0.45
LSM5-209ENST00000468872 RBM27Q9P2N5 1060 aaKnown RBP12.23□□□□□ -0.45
LSM5-209ENST00000468872 VSIG10Q8N0Z9 540 aa12.21□□□□□ -0.45
LSM5-209ENST00000468872 SOWAHBA6NEL2 793 aa12.2□□□□□ -0.46
LSM5-209ENST00000468872 C3orf80F5H4A9 247 aa12.2□□□□□ -0.46
LSM5-209ENST00000468872 BCAMP50895 628 aa12.2□□□□□ -0.46
LSM5-209ENST00000468872 PLA2G2EQ9NZK7 142 aa12.2□□□□□ -0.46
LSM5-209ENST00000468872 SMAPO00193 183 aa12.19□□□□□ -0.46
LSM5-209ENST00000468872 NBPF26B4DH59 902 aa12.18□□□□□ -0.46
LSM5-209ENST00000468872 TTC13Q8NBP0 860 aa12.18□□□□□ -0.46
LSM5-209ENST00000468872 TATDN2Q93075 761 aa12.18□□□□□ -0.46
LSM5-209ENST00000468872 TESPA1A2RU30 521 aaPredicted RBP12.17□□□□□ -0.46
LSM5-209ENST00000468872 PADI6Q6TGC4 694 aa12.17□□□□□ -0.46
LSM5-209ENST00000468872 PNMA3Q9UL41 463 aa12.17□□□□□ -0.46
LSM5-209ENST00000468872 PTGDRQ13258 359 aa12.16□□□□□ -0.46
LSM5-209ENST00000468872 NUDT18Q6ZVK8 323 aa12.15□□□□□ -0.46
LSM5-209ENST00000468872 NUTM2FA1L443 756 aa12.14□□□□□ -0.47
LSM5-209ENST00000468872 LRCH3Q96II8 777 aa12.14□□□□□ -0.47
LSM5-209ENST00000468872 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.14□□□□□ -0.47
LSM5-209ENST00000468872 WBP1LQ9NX94 342 aa12.12□□□□□ -0.47
LSM5-209ENST00000468872 SMYD5Q6GMV2 418 aa12.1□□□□□ -0.47
LSM5-209ENST00000468872 SAMD7Q7Z3H4 446 aa12.1□□□□□ -0.47
LSM5-209ENST00000468872 HPS5Q9UPZ3 1129 aa12.1□□□□□ -0.47
LSM5-209ENST00000468872 RBM26Q5T8P6 1007 aaKnown RBP12.09□□□□□ -0.47
LSM5-209ENST00000468872 TSR3Q9UJK0 312 aaKnown RBP12.09□□□□□ -0.47
LSM5-209ENST00000468872 FCHSD2O94868 740 aa12.08□□□□□ -0.48
LSM5-209ENST00000468872 NYAP1Q6ZVC0 841 aa12.08□□□□□ -0.48
LSM5-209ENST00000468872 EYA1Q99502 592 aa12.06□□□□□ -0.48
LSM5-209ENST00000468872 HDGFP51858 240 aaKnown RBP12.03□□□□□ -0.48
LSM5-209ENST00000468872 PPP4CP60510 307 aa12.03□□□□□ -0.48
LSM5-209ENST00000468872 IFFO2Q5TF58 517 aa12.02□□□□□ -0.49
LSM5-209ENST00000468872 ADGRG1Q9Y653 693 aa12.02□□□□□ -0.49
LSM5-209ENST00000468872 HIC1Q14526 733 aa12□□□□□ -0.49
LSM5-209ENST00000468872 FAM161AQ3B820 660 aa12□□□□□ -0.49
LSM5-209ENST00000468872 SWT1Q5T5J6 900 aaKnown RBP12□□□□□ -0.49
LSM5-209ENST00000468872 RNF40O75150 1001 aa11.99□□□□□ -0.49
LSM5-209ENST00000468872 ITGBL1O95965 494 aaPredicted RBP11.99□□□□□ -0.49
LSM5-209ENST00000468872 RBM46Q8TBY0 533 aaKnown RBP11.99□□□□□ -0.49
LSM5-209ENST00000468872 GPR37O15354 613 aa11.98□□□□□ -0.49
LSM5-209ENST00000468872 DNAJB2P25686 324 aa11.96□□□□□ -0.49
LSM5-209ENST00000468872 SLF2Q8IX21 1173 aa11.96□□□□□ -0.49
LSM5-209ENST00000468872 GNPATO15228 680 aa11.95□□□□□ -0.5
LSM5-209ENST00000468872 FECHP22830 423 aa11.94□□□□□ -0.5
LSM5-209ENST00000468872 GPIHBP1Q8IV16 184 aa11.94□□□□□ -0.5
LSM5-209ENST00000468872 RCCD1A6NED2 376 aa11.93□□□□□ -0.5
LSM5-209ENST00000468872 TMEM134Q9H6X4 195 aa11.93□□□□□ -0.5
LSM5-209ENST00000468872 OATP04181 439 aa11.92□□□□□ -0.5
LSM5-209ENST00000468872 SLC4A3P48751 1232 aa11.92□□□□□ -0.5
LSM5-209ENST00000468872 KCNC4Q03721 635 aa11.92□□□□□ -0.5
LSM5-209ENST00000468872 A0A0G2JS52 829 aa11.91□□□□□ -0.5
LSM5-209ENST00000468872 APLP1P51693 650 aa11.91□□□□□ -0.5
LSM5-209ENST00000468872 PXYLP1Q8TE99 480 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms