RNA–Protein interactions for RNA: ENST00000467275.1

ATG3-204, Transcript of autophagy related 3, humanhuman

TSL 3

Gene ATG3, Length 559 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG3-204ENST00000467275 ZBED2Q9BTP6 218 aa13.22□□□□□ -0.29
ATG3-204ENST00000467275 ARIH1Q9Y4X5 557 aaPredicted RBP13.2□□□□□ -0.3
ATG3-204ENST00000467275 PPP1R3GB7ZBB8 358 aa13.19□□□□□ -0.3
ATG3-204ENST00000467275 RBM33Q96EV2 1170 aaKnown RBP13.19□□□□□ -0.3
ATG3-204ENST00000467275 NBR1Q14596 966 aa13.17□□□□□ -0.3
ATG3-204ENST00000467275 COL9A1P20849 921 aa13.16□□□□□ -0.3
ATG3-204ENST00000467275 PLCB2Q00722 1185 aa13.16□□□□□ -0.3
ATG3-204ENST00000467275 C6orf132Q5T0Z8 1188 aa13.16□□□□□ -0.3
ATG3-204ENST00000467275 KCTD12Q96CX2 325 aaKnown RBP13.14□□□□□ -0.31
ATG3-204ENST00000467275 GRXCR2A6NFK2 248 aa13.13□□□□□ -0.31
ATG3-204ENST00000467275 HCSTQ9UBK5 93 aa13.13□□□□□ -0.31
ATG3-204ENST00000467275 BHMG1C9JSJ3 638 aaPredicted RBP13.12□□□□□ -0.31
ATG3-204ENST00000467275 MAP3K7O43318 606 aa13.12□□□□□ -0.31
ATG3-204ENST00000467275 PROX2Q3B8N5 592 aa13.12□□□□□ -0.31
ATG3-204ENST00000467275 MRPL50Q8N5N7 158 aaKnown RBP13.12□□□□□ -0.31
ATG3-204ENST00000467275 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
ATG3-204ENST00000467275 GOLGA8CPA6NN73 597 aa13.11□□□□□ -0.31
ATG3-204ENST00000467275 EN1Q05925 392 aaPredicted RBP13.11□□□□□ -0.31
ATG3-204ENST00000467275 RABGEF1Q9UJ41 708 aa13.09□□□□□ -0.31
ATG3-204ENST00000467275 TSR1Q2NL82 804 aaKnown RBP13.07□□□□□ -0.32
ATG3-204ENST00000467275 KCNV2Q8TDN2 545 aa13.07□□□□□ -0.32
ATG3-204ENST00000467275 ARHGEF1Q92888 912 aaKnown RBP13.07□□□□□ -0.32
ATG3-204ENST00000467275 KIAA1468Q9P260 1216 aa13.04□□□□□ -0.32
ATG3-204ENST00000467275 ONECUT3O60422 494 aaPredicted RBP13.03□□□□□ -0.32
ATG3-204ENST00000467275 WNT2BQ93097 391 aa13.03□□□□□ -0.32
ATG3-204ENST00000467275 TRIM6-TRIM34B2RNG4 842 aa13.02□□□□□ -0.33
ATG3-204ENST00000467275 PTPN5P54829 565 aa13.02□□□□□ -0.33
ATG3-204ENST00000467275 P3H3Q8IVL6 736 aa13.02□□□□□ -0.33
ATG3-204ENST00000467275 OSBPP22059 807 aa13.01□□□□□ -0.33
ATG3-204ENST00000467275 HAP1P54257 671 aaPredicted RBP13.01□□□□□ -0.33
ATG3-204ENST00000467275 PRIM1P49642 420 aaKnown RBP13□□□□□ -0.33
ATG3-204ENST00000467275 THSD4Q6ZMP0 1018 aa12.99□□□□□ -0.33
ATG3-204ENST00000467275 LAPTM4BQ86VI4 370 aa12.98□□□□□ -0.33
ATG3-204ENST00000467275 CERKQ8TCT0 537 aa12.98□□□□□ -0.33
ATG3-204ENST00000467275 PACS2Q86VP3 889 aa12.96□□□□□ -0.33
ATG3-204ENST00000467275 ANKK1Q8NFD2 765 aa12.96□□□□□ -0.33
ATG3-204ENST00000467275 SEPT9Q9UHD8 586 aaPredicted RBP12.96□□□□□ -0.33
ATG3-204ENST00000467275 MLLT3P42568 568 aaPredicted RBP12.94□□□□□ -0.34
ATG3-204ENST00000467275 CDCA7LQ96GN5 454 aa12.94□□□□□ -0.34
ATG3-204ENST00000467275 CDHR5Q9HBB8 845 aa12.94□□□□□ -0.34
ATG3-204ENST00000467275 TSKSQ9UJT2 592 aa12.94□□□□□ -0.34
ATG3-204ENST00000467275 PRSS12P56730 875 aa12.93□□□□□ -0.34
ATG3-204ENST00000467275 ZFRQ96KR1 1074 aaKnown RBP12.93□□□□□ -0.34
ATG3-204ENST00000467275 PLA2G2EQ9NZK7 142 aa12.93□□□□□ -0.34
ATG3-204ENST00000467275 FAM98CQ17RN3 349 aaKnown RBP12.91□□□□□ -0.34
ATG3-204ENST00000467275 BCAMP50895 628 aa12.88□□□□□ -0.35
ATG3-204ENST00000467275 SOWAHBA6NEL2 793 aa12.87□□□□□ -0.35
ATG3-204ENST00000467275 FAM198AQ9UFP1 575 aa12.86□□□□□ -0.35
ATG3-204ENST00000467275 NBPF26B4DH59 902 aa12.85□□□□□ -0.35
ATG3-204ENST00000467275 SMAPO00193 183 aa12.85□□□□□ -0.35
ATG3-204ENST00000467275 SEMA3EO15041 775 aa12.85□□□□□ -0.35
ATG3-204ENST00000467275 NPDC1Q9NQX5 325 aaPredicted RBP12.84□□□□□ -0.35
ATG3-204ENST00000467275 RBM27Q9P2N5 1060 aaKnown RBP12.84□□□□□ -0.35
ATG3-204ENST00000467275 PNMA3Q9UL41 463 aa12.84□□□□□ -0.35
ATG3-204ENST00000467275 TATDN2Q93075 761 aa12.83□□□□□ -0.36
ATG3-204ENST00000467275 LRCH3Q96II8 777 aa12.83□□□□□ -0.36
ATG3-204ENST00000467275 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.83□□□□□ -0.36
ATG3-204ENST00000467275 PADI6Q6TGC4 694 aa12.81□□□□□ -0.36
ATG3-204ENST00000467275 NUDT18Q6ZVK8 323 aa12.8□□□□□ -0.36
ATG3-204ENST00000467275 KDM2AQ9Y2K7 1162 aa12.8□□□□□ -0.36
ATG3-204ENST00000467275 NUTM2FA1L443 756 aa12.79□□□□□ -0.36
ATG3-204ENST00000467275 C3orf80F5H4A9 247 aa12.79□□□□□ -0.36
ATG3-204ENST00000467275 WBP1LQ9NX94 342 aa12.78□□□□□ -0.36
ATG3-204ENST00000467275 NYAP1Q6ZVC0 841 aa12.77□□□□□ -0.37
ATG3-204ENST00000467275 TSR3Q9UJK0 312 aaKnown RBP12.77□□□□□ -0.37
ATG3-204ENST00000467275 HPS5Q9UPZ3 1129 aa12.77□□□□□ -0.37
ATG3-204ENST00000467275 HDGFP51858 240 aaKnown RBP12.76□□□□□ -0.37
ATG3-204ENST00000467275 PTGDRQ13258 359 aa12.76□□□□□ -0.37
ATG3-204ENST00000467275 SAMD7Q7Z3H4 446 aa12.76□□□□□ -0.37
ATG3-204ENST00000467275 TTC13Q8NBP0 860 aa12.76□□□□□ -0.37
ATG3-204ENST00000467275 SMYD5Q6GMV2 418 aa12.75□□□□□ -0.37
ATG3-204ENST00000467275 VSIG10Q8N0Z9 540 aa12.74□□□□□ -0.37
ATG3-204ENST00000467275 TESPA1A2RU30 521 aaPredicted RBP12.73□□□□□ -0.37
ATG3-204ENST00000467275 PPP4CP60510 307 aa12.73□□□□□ -0.37
ATG3-204ENST00000467275 RNF40O75150 1001 aa12.7□□□□□ -0.38
ATG3-204ENST00000467275 FCHSD2O94868 740 aa12.69□□□□□ -0.38
ATG3-204ENST00000467275 IFFO2Q5TF58 517 aa12.68□□□□□ -0.38
ATG3-204ENST00000467275 RBM26Q5T8P6 1007 aaKnown RBP12.67□□□□□ -0.38
ATG3-204ENST00000467275 EYA1Q99502 592 aa12.66□□□□□ -0.38
ATG3-204ENST00000467275 ITGBL1O95965 494 aaPredicted RBP12.65□□□□□ -0.38
ATG3-204ENST00000467275 SLC4A3P48751 1232 aa12.64□□□□□ -0.39
ATG3-204ENST00000467275 SWT1Q5T5J6 900 aaKnown RBP12.64□□□□□ -0.39
ATG3-204ENST00000467275 RBM46Q8TBY0 533 aaKnown RBP12.64□□□□□ -0.39
ATG3-204ENST00000467275 KCNC4Q03721 635 aa12.62□□□□□ -0.39
ATG3-204ENST00000467275 SLF2Q8IX21 1173 aa12.62□□□□□ -0.39
ATG3-204ENST00000467275 ADGRG1Q9Y653 693 aa12.62□□□□□ -0.39
ATG3-204ENST00000467275 HIC1Q14526 733 aa12.61□□□□□ -0.39
ATG3-204ENST00000467275 NECTIN2Q92692 538 aa12.61□□□□□ -0.39
ATG3-204ENST00000467275 FAM161AQ3B820 660 aa12.6□□□□□ -0.39
ATG3-204ENST00000467275 A0A0G2JS52 829 aa12.59□□□□□ -0.39
ATG3-204ENST00000467275 DNAJB2P25686 324 aa12.59□□□□□ -0.39
ATG3-204ENST00000467275 RCCD1A6NED2 376 aa12.55□□□□□ -0.4
ATG3-204ENST00000467275 GNPATO15228 680 aa12.55□□□□□ -0.4
ATG3-204ENST00000467275 TULP1O00294 542 aaPredicted RBP12.54□□□□□ -0.4
ATG3-204ENST00000467275 OATP04181 439 aa12.54□□□□□ -0.4
ATG3-204ENST00000467275 APLP1P51693 650 aa12.54□□□□□ -0.4
ATG3-204ENST00000467275 TMEM134Q9H6X4 195 aa12.54□□□□□ -0.4
ATG3-204ENST00000467275 GPIHBP1Q8IV16 184 aa12.53□□□□□ -0.4
ATG3-204ENST00000467275 TJAP1Q5JTD0 557 aa12.52□□□□□ -0.41
ATG3-204ENST00000467275 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms