RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 ITGBL1O95965 494 aaPredicted RBP12.4□□□□□ -0.42
LRCH3-211ENST00000466054 NYAP1Q6ZVC0 841 aa12.4□□□□□ -0.42
LRCH3-211ENST00000466054 COL9A1P20849 921 aa12.39□□□□□ -0.43
LRCH3-211ENST00000466054 SOWAHBA6NEL2 793 aa12.38□□□□□ -0.43
LRCH3-211ENST00000466054 KIAA1468Q9P260 1216 aa12.37□□□□□ -0.43
LRCH3-211ENST00000466054 PHF14O94880 888 aa12.36□□□□□ -0.43
LRCH3-211ENST00000466054 KCNC4Q03721 635 aa12.36□□□□□ -0.43
LRCH3-211ENST00000466054 ZFRQ96KR1 1074 aaKnown RBP12.36□□□□□ -0.43
LRCH3-211ENST00000466054 MFSD10Q14728 455 aa12.34□□□□□ -0.43
LRCH3-211ENST00000466054 EMILIN3Q9NT22 766 aa12.34□□□□□ -0.43
LRCH3-211ENST00000466054 GTPBP6O43824 516 aaPredicted RBP12.33□□□□□ -0.44
LRCH3-211ENST00000466054 WBP1LQ9NX94 342 aa12.33□□□□□ -0.44
LRCH3-211ENST00000466054 SEPT9Q9UHD8 586 aaPredicted RBP12.33□□□□□ -0.44
LRCH3-211ENST00000466054 DCAF8L2P0C7V8 631 aa12.31□□□□□ -0.44
LRCH3-211ENST00000466054 EPAS1Q99814 870 aa12.3□□□□□ -0.44
LRCH3-211ENST00000466054 ONECUT3O60422 494 aaPredicted RBP12.29□□□□□ -0.44
LRCH3-211ENST00000466054 LRCH3Q96II8 777 aa12.29□□□□□ -0.44
LRCH3-211ENST00000466054 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.29□□□□□ -0.44
LRCH3-211ENST00000466054 FAM98CQ17RN3 349 aaKnown RBP12.27□□□□□ -0.45
LRCH3-211ENST00000466054 C6orf132Q5T0Z8 1188 aa12.27□□□□□ -0.45
LRCH3-211ENST00000466054 LAPTM4AQ15012 233 aa12.26□□□□□ -0.45
LRCH3-211ENST00000466054 RBM33Q96EV2 1170 aaKnown RBP12.26□□□□□ -0.45
LRCH3-211ENST00000466054 TSR3Q9UJK0 312 aaKnown RBP12.26□□□□□ -0.45
LRCH3-211ENST00000466054 HPS5Q9UPZ3 1129 aa12.26□□□□□ -0.45
LRCH3-211ENST00000466054 TRIM6-TRIM34B2RNG4 842 aa12.25□□□□□ -0.45
LRCH3-211ENST00000466054 DPYSL4O14531 572 aa12.21□□□□□ -0.45
LRCH3-211ENST00000466054 PACS2Q86VP3 889 aa12.2□□□□□ -0.46
LRCH3-211ENST00000466054 PPP4CP60510 307 aa12.19□□□□□ -0.46
LRCH3-211ENST00000466054 DDX12PQ92771 950 aa12.19□□□□□ -0.46
LRCH3-211ENST00000466054 GFRA3O60609 400 aa12.18□□□□□ -0.46
LRCH3-211ENST00000466054 CADPS2Q86UW7 1296 aa12.16□□□□□ -0.46
LRCH3-211ENST00000466054 MAP3K7O43318 606 aa12.15□□□□□ -0.46
LRCH3-211ENST00000466054 NBR1Q14596 966 aa12.14□□□□□ -0.47
LRCH3-211ENST00000466054 TRAF7Q6Q0C0 670 aa12.13□□□□□ -0.47
LRCH3-211ENST00000466054 CAMK2BQ13554 666 aa12.11□□□□□ -0.47
LRCH3-211ENST00000466054 PRKD2Q9BZL6 878 aa12.1□□□□□ -0.47
LRCH3-211ENST00000466054 EN1Q05925 392 aaPredicted RBP12.08□□□□□ -0.48
LRCH3-211ENST00000466054 TSKSQ9UJT2 592 aa12.08□□□□□ -0.48
LRCH3-211ENST00000466054 TSR1Q2NL82 804 aaKnown RBP12.07□□□□□ -0.48
LRCH3-211ENST00000466054 SAMD7Q7Z3H4 446 aa12.07□□□□□ -0.48
LRCH3-211ENST00000466054 RNF40O75150 1001 aa12.06□□□□□ -0.48
LRCH3-211ENST00000466054 HDGFP51858 240 aaKnown RBP12.06□□□□□ -0.48
LRCH3-211ENST00000466054 IL21Q9HBE4 155 aa12.06□□□□□ -0.48
LRCH3-211ENST00000466054 NRG2O14511 850 aaPredicted RBP12.05□□□□□ -0.48
LRCH3-211ENST00000466054 SMAPO00193 183 aa12.04□□□□□ -0.48
LRCH3-211ENST00000466054 TJAP1Q5JTD0 557 aa12.04□□□□□ -0.48
LRCH3-211ENST00000466054 NBPF26B4DH59 902 aa12.03□□□□□ -0.48
LRCH3-211ENST00000466054 CDCA7LQ96GN5 454 aa12.03□□□□□ -0.48
LRCH3-211ENST00000466054 MTRQ99707 1265 aa12.03□□□□□ -0.48
LRCH3-211ENST00000466054 PRSS12P56730 875 aa12.01□□□□□ -0.49
LRCH3-211ENST00000466054 PPP1R18Q6NYC8 613 aa12.01□□□□□ -0.49
LRCH3-211ENST00000466054 CERKQ8TCT0 537 aa12.01□□□□□ -0.49
LRCH3-211ENST00000466054 PNMA3Q9UL41 463 aa12□□□□□ -0.49
LRCH3-211ENST00000466054 V9GY48 417 aaPredicted RBP12□□□□□ -0.49
LRCH3-211ENST00000466054 SPDYE16A6NNV3 312 aaPredicted RBP11.99□□□□□ -0.49
LRCH3-211ENST00000466054 PDIA6Q15084 440 aa11.98□□□□□ -0.49
LRCH3-211ENST00000466054 GGCXP38435 758 aa11.97□□□□□ -0.49
LRCH3-211ENST00000466054 TATDN2Q93075 761 aa11.97□□□□□ -0.49
LRCH3-211ENST00000466054 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.97□□□□□ -0.49
LRCH3-211ENST00000466054 LCE2BO14633 110 aa11.96□□□□□ -0.49
LRCH3-211ENST00000466054 PDZRN3Q9UPQ7 1066 aa11.96□□□□□ -0.49
LRCH3-211ENST00000466054 NECTIN2Q92692 538 aa11.95□□□□□ -0.5
LRCH3-211ENST00000466054 GRXCR2A6NFK2 248 aa11.94□□□□□ -0.5
LRCH3-211ENST00000466054 ZNF787Q6DD87 383 aa11.94□□□□□ -0.5
LRCH3-211ENST00000466054 ZNF516Q92618 1163 aa11.93□□□□□ -0.5
LRCH3-211ENST00000466054 SLC4A3P48751 1232 aa11.92□□□□□ -0.5
LRCH3-211ENST00000466054 NUDT18Q6ZVK8 323 aa11.91□□□□□ -0.5
LRCH3-211ENST00000466054 FAM198AQ9UFP1 575 aa11.91□□□□□ -0.5
LRCH3-211ENST00000466054 APLP1P51693 650 aa11.89□□□□□ -0.51
LRCH3-211ENST00000466054 COPS2P61201 443 aa11.88□□□□□ -0.51
LRCH3-211ENST00000466054 SLF2Q8IX21 1173 aa11.87□□□□□ -0.51
LRCH3-211ENST00000466054 NKX2-3Q8TAU0 364 aa11.86□□□□□ -0.51
LRCH3-211ENST00000466054 C3orf80F5H4A9 247 aa11.85□□□□□ -0.51
LRCH3-211ENST00000466054 E2F4Q16254 413 aa11.85□□□□□ -0.51
LRCH3-211ENST00000466054 WDR70Q9NW82 654 aa11.85□□□□□ -0.51
LRCH3-211ENST00000466054 RBM27Q9P2N5 1060 aaKnown RBP11.84□□□□□ -0.51
LRCH3-211ENST00000466054 SWT1Q5T5J6 900 aaKnown RBP11.82□□□□□ -0.52
LRCH3-211ENST00000466054 CDHR5Q9HBB8 845 aa11.82□□□□□ -0.52
LRCH3-211ENST00000466054 PRIM1P49642 420 aaKnown RBP11.81□□□□□ -0.52
LRCH3-211ENST00000466054 BBXQ8WY36 941 aaPredicted RBP11.81□□□□□ -0.52
LRCH3-211ENST00000466054 TMUB1Q9BVT8 246 aa11.81□□□□□ -0.52
LRCH3-211ENST00000466054 PRR14Q9BWN1 585 aa11.81□□□□□ -0.52
LRCH3-211ENST00000466054 PKDCCQ504Y2 493 aa11.78□□□□□ -0.52
LRCH3-211ENST00000466054 ZPR1O75312 459 aa11.77□□□□□ -0.53
LRCH3-211ENST00000466054 AMER1Q5JTC6 1135 aaPredicted RBP11.77□□□□□ -0.53
LRCH3-211ENST00000466054 PCDHB3Q9Y5E6 796 aa11.77□□□□□ -0.53
LRCH3-211ENST00000466054 OSBPP22059 807 aa11.76□□□□□ -0.53
LRCH3-211ENST00000466054 PADI6Q6TGC4 694 aa11.76□□□□□ -0.53
LRCH3-211ENST00000466054 SPRYD3Q8NCJ5 442 aa11.76□□□□□ -0.53
LRCH3-211ENST00000466054 SLC19A1P41440 591 aa11.75□□□□□ -0.53
LRCH3-211ENST00000466054 ZNF775Q96BV0 537 aaPredicted RBP11.75□□□□□ -0.53
LRCH3-211ENST00000466054 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.73□□□□□ -0.53
LRCH3-211ENST00000466054 ARIH1Q9Y4X5 557 aaPredicted RBP11.73□□□□□ -0.53
LRCH3-211ENST00000466054 RNF223E7ERA6 249 aa11.69□□□□□ -0.54
LRCH3-211ENST00000466054 DGAT1O75907 488 aa11.68□□□□□ -0.54
LRCH3-211ENST00000466054 BLOC1S3Q6QNY0 202 aa11.68□□□□□ -0.54
LRCH3-211ENST00000466054 TTC13Q8NBP0 860 aa11.68□□□□□ -0.54
LRCH3-211ENST00000466054 FAM187AA6NFU0 413 aa11.65□□□□□ -0.54
LRCH3-211ENST00000466054 KMT5BQ4FZB7 885 aa11.65□□□□□ -0.54
LRCH3-211ENST00000466054 SPRYD7Q5W111 196 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms