RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 MLECQ14165 292 aa10.48□□□□□ -0.73
USP54-210ENST00000466048 FOXD1Q16676 465 aa10.48□□□□□ -0.73
USP54-210ENST00000466048 FAM135AQ9P2D6 1515 aa10.48□□□□□ -0.73
USP54-210ENST00000466048 GLIPR1L2Q4G1C9 344 aa10.48□□□□□ -0.73
USP54-210ENST00000466048 SLC24A1O60721 1099 aa10.47□□□□□ -0.73
USP54-210ENST00000466048 TEX14Q8IWB6 1497 aa10.47□□□□□ -0.73
USP54-210ENST00000466048 ADGRL1O94910 1474 aa10.46□□□□□ -0.73
USP54-210ENST00000466048 CCDC144AA2RUR9 1427 aa10.46□□□□□ -0.73
USP54-210ENST00000466048 DDX10Q13206 875 aaKnown RBP10.46□□□□□ -0.74
USP54-210ENST00000466048 IQGAP3Q86VI3 1631 aa10.45□□□□□ -0.74
USP54-210ENST00000466048 HSPA5P11021 654 aaKnown RBP10.44□□□□□ -0.74
USP54-210ENST00000466048 CCER2I3L3R5 266 aa10.44□□□□□ -0.74
USP54-210ENST00000466048 STAC3Q96MF2 364 aa10.44□□□□□ -0.74
USP54-210ENST00000466048 SCAPERQ9BY12 1400 aa10.44□□□□□ -0.74
USP54-210ENST00000466048 TRAPPC8Q9Y2L5 1435 aa10.43□□□□□ -0.74
USP54-210ENST00000466048 ATP7AQ04656 1500 aa10.43□□□□□ -0.74
USP54-210ENST00000466048 ZNF518AQ6AHZ1 1483 aa10.43□□□□□ -0.74
USP54-210ENST00000466048 CD109Q6YHK3 1445 aa10.43□□□□□ -0.74
USP54-210ENST00000466048 MAGI2Q86UL8 1455 aa10.42□□□□□ -0.74
USP54-210ENST00000466048 ZFYVE16Q7Z3T8 1539 aa10.42□□□□□ -0.74
USP54-210ENST00000466048 UHRF1BP1Q6BDS2 1440 aa10.42□□□□□ -0.74
USP54-210ENST00000466048 EIF2AK4Q9P2K8 1649 aaKnown RBP10.41□□□□□ -0.74
USP54-210ENST00000466048 AEBP2Q6ZN18 517 aaPredicted RBP10.41□□□□□ -0.74
USP54-210ENST00000466048 C14orf37Q86TY3 774 aa10.41□□□□□ -0.74
USP54-210ENST00000466048 NEO1Q92859 1461 aa10.41□□□□□ -0.74
USP54-210ENST00000466048 GGT6Q6P531 493 aa10.4□□□□□ -0.74
USP54-210ENST00000466048 ATP10AO60312 1499 aa10.4□□□□□ -0.74
USP54-210ENST00000466048 INO80Q9ULG1 1556 aaPredicted RBP10.4□□□□□ -0.74
USP54-210ENST00000466048 RALGAPBQ86X10 1494 aa10.4□□□□□ -0.75
USP54-210ENST00000466048 DHX29Q7Z478 1369 aaKnown RBP10.4□□□□□ -0.75
USP54-210ENST00000466048 NEFMP07197 916 aa10.39□□□□□ -0.75
USP54-210ENST00000466048 ROCK2O75116 1388 aaKnown RBP10.39□□□□□ -0.75
USP54-210ENST00000466048 AFAP1Q8N556 730 aa10.39□□□□□ -0.75
USP54-210ENST00000466048 POGZQ7Z3K3 1410 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 CDCA8Q53HL2 280 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 DCAF11Q8TEB1 546 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 CARD11Q9BXL7 1154 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 KIF3BO15066 747 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 NBPF8Q3BBV2 869 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 SENP3Q9H4L4 574 aaPredicted RBP10.37□□□□□ -0.75
USP54-210ENST00000466048 USP47Q96K76 1375 aa10.37□□□□□ -0.75
USP54-210ENST00000466048 HIRIP3Q9BW71 556 aaPredicted RBP10.36□□□□□ -0.75
USP54-210ENST00000466048 CCDC7Q96M83 1385 aa10.36□□□□□ -0.75
USP54-210ENST00000466048 CNTLNQ9NXG0 1405 aa10.36□□□□□ -0.75
USP54-210ENST00000466048 TET3O43151 1660 aa10.36□□□□□ -0.75
USP54-210ENST00000466048 MLH3Q9UHC1 1453 aa10.35□□□□□ -0.75
USP54-210ENST00000466048 WASHC2CQ9Y4E1 1318 aa10.35□□□□□ -0.75
USP54-210ENST00000466048 EID1Q9Y6B2 187 aa10.35□□□□□ -0.75
USP54-210ENST00000466048 DEPDC5O75140 1603 aa10.35□□□□□ -0.75
USP54-210ENST00000466048 KDM2AQ9Y2K7 1162 aa10.35□□□□□ -0.75
USP54-210ENST00000466048 A2MP01023 1474 aa10.34□□□□□ -0.75
USP54-210ENST00000466048 GLI2P10070 1586 aa10.34□□□□□ -0.75
USP54-210ENST00000466048 HECW2Q9P2P5 1572 aa10.33□□□□□ -0.76
USP54-210ENST00000466048 TRPM2O94759 1503 aa10.33□□□□□ -0.76
USP54-210ENST00000466048 WASHC2AQ641Q2 1341 aa10.33□□□□□ -0.76
USP54-210ENST00000466048 POLR1AO95602 1720 aaPredicted RBP10.33□□□□□ -0.76
USP54-210ENST00000466048 SCAF1Q9H7N4 1312 aaKnown RBP10.32□□□□□ -0.76
USP54-210ENST00000466048 KDM5CP41229 1560 aa10.32□□□□□ -0.76
USP54-210ENST00000466048 PRDM15P57071 1507 aaPredicted RBP10.32□□□□□ -0.76
USP54-210ENST00000466048 SPATA31E1Q6ZUB1 1445 aa10.32□□□□□ -0.76
USP54-210ENST00000466048 PRAG1Q86YV5 1406 aa10.31□□□□□ -0.76
USP54-210ENST00000466048 PTPRTO14522 1441 aa10.31□□□□□ -0.76
USP54-210ENST00000466048 NEURL4Q96JN8 1562 aa10.31□□□□□ -0.76
USP54-210ENST00000466048 LMTK2Q8IWU2 1503 aa10.3□□□□□ -0.76
USP54-210ENST00000466048 VWDEQ8N2E2 1590 aa10.3□□□□□ -0.76
USP54-210ENST00000466048 RGL3Q3MIN7 710 aa10.3□□□□□ -0.76
USP54-210ENST00000466048 LAMC1P11047 1609 aa10.3□□□□□ -0.76
USP54-210ENST00000466048 ANP32AP39687 249 aaKnown RBP10.29□□□□□ -0.76
USP54-210ENST00000466048 SPHKAPQ2M3C7 1700 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 RNF17Q9BXT8 1623 aaKnown RBP10.29□□□□□ -0.76
USP54-210ENST00000466048 RIMBP3CA6NJZ7 1639 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 RIMBP3BA6NNM3 1639 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 RIMBP3Q9UFD9 1639 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 KIF7Q2M1P5 1343 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 PLA2R1Q13018 1463 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 EIF3AQ14152 1382 aaKnown RBP10.29□□□□□ -0.76
USP54-210ENST00000466048 KIDINS220Q9ULH0 1771 aa10.29□□□□□ -0.76
USP54-210ENST00000466048 GPRASP1Q5JY77 1395 aa10.28□□□□□ -0.76
USP54-210ENST00000466048 E9PCH4 1651 aa10.28□□□□□ -0.76
USP54-210ENST00000466048 KTN1Q86UP2 1357 aaKnown RBP10.28□□□□□ -0.76
USP54-210ENST00000466048 MAP3K4Q9Y6R4 1608 aa10.28□□□□□ -0.76
USP54-210ENST00000466048 BCORL1Q5H9F3 1711 aa10.27□□□□□ -0.77
USP54-210ENST00000466048 CEP152O94986 1710 aa10.27□□□□□ -0.77
USP54-210ENST00000466048 EFCAB6Q5THR3 1501 aa10.27□□□□□ -0.77
USP54-210ENST00000466048 TRPM1Q7Z4N2 1603 aa10.26□□□□□ -0.77
USP54-210ENST00000466048 ANP32EQ9BTT0 268 aa10.26□□□□□ -0.77
USP54-210ENST00000466048 POGKQ9P215 609 aa10.26□□□□□ -0.77
USP54-210ENST00000466048 TMF1P82094 1093 aa10.25□□□□□ -0.77
USP54-210ENST00000466048 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.25□□□□□ -0.77
USP54-210ENST00000466048 EIF5BO60841 1220 aaKnown RBP10.25□□□□□ -0.77
USP54-210ENST00000466048 PPP6R1Q9UPN7 881 aa10.25□□□□□ -0.77
USP54-210ENST00000466048 RPGRIP1LQ68CZ1 1315 aa10.25□□□□□ -0.77
USP54-210ENST00000466048 HAP1P54257 671 aaPredicted RBP10.24□□□□□ -0.77
USP54-210ENST00000466048 ST20-MTHFSA0A0A6YYL1 179 aa10.24□□□□□ -0.77
USP54-210ENST00000466048 KIF1BO60333 1816 aa10.23□□□□□ -0.77
USP54-210ENST00000466048 ZC3H13Q5T200 1668 aaKnown RBP10.23□□□□□ -0.77
USP54-210ENST00000466048 PRKRIP1Q9H875 184 aaPredicted RBP10.23□□□□□ -0.77
USP54-210ENST00000466048 PLEKHG5O94827 1062 aa10.22□□□□□ -0.77
USP54-210ENST00000466048 MYOM2P54296 1465 aa10.22□□□□□ -0.77
USP54-210ENST00000466048 RALBP1Q15311 655 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms