RNA–Protein interactions for RNA: ENST00000465036.1

UBR4-209, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 392 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-209ENST00000465036 RABGEF1Q9UJ41 708 aa13.06□□□□□ -0.32
UBR4-209ENST00000465036 ONECUT3O60422 494 aaPredicted RBP13.05□□□□□ -0.32
UBR4-209ENST00000465036 THSD4Q6ZMP0 1018 aa13.04□□□□□ -0.32
UBR4-209ENST00000465036 GOLGA8CPA6NN73 597 aa13.03□□□□□ -0.32
UBR4-209ENST00000465036 COL9A1P20849 921 aa13.03□□□□□ -0.32
UBR4-209ENST00000465036 PDIA6Q15084 440 aa13.03□□□□□ -0.32
UBR4-209ENST00000465036 ARIH1Q9Y4X5 557 aaPredicted RBP13.03□□□□□ -0.32
UBR4-209ENST00000465036 SPDYE16A6NNV3 312 aaPredicted RBP13.02□□□□□ -0.33
UBR4-209ENST00000465036 C6orf132Q5T0Z8 1188 aa13.02□□□□□ -0.33
UBR4-209ENST00000465036 WNT2BQ93097 391 aa13.02□□□□□ -0.33
UBR4-209ENST00000465036 LAPTM4BQ86VI4 370 aa13□□□□□ -0.33
UBR4-209ENST00000465036 PAXIP1Q6ZW49 1069 aaPredicted RBP12.99□□□□□ -0.33
UBR4-209ENST00000465036 PTPN5P54829 565 aa12.98□□□□□ -0.33
UBR4-209ENST00000465036 E2F4Q16254 413 aa12.98□□□□□ -0.33
UBR4-209ENST00000465036 PROX2Q3B8N5 592 aa12.98□□□□□ -0.33
UBR4-209ENST00000465036 IFFO2Q5TF58 517 aa12.98□□□□□ -0.33
UBR4-209ENST00000465036 CFAP44Q96MT7 982 aa12.96□□□□□ -0.33
UBR4-209ENST00000465036 DDX12PQ92771 950 aa12.95□□□□□ -0.34
UBR4-209ENST00000465036 WDR70Q9NW82 654 aa12.94□□□□□ -0.34
UBR4-209ENST00000465036 EN1Q05925 392 aaPredicted RBP12.93□□□□□ -0.34
UBR4-209ENST00000465036 KIAA1468Q9P260 1216 aa12.93□□□□□ -0.34
UBR4-209ENST00000465036 TRIM6-TRIM34B2RNG4 842 aa12.92□□□□□ -0.34
UBR4-209ENST00000465036 ANKK1Q8NFD2 765 aa12.92□□□□□ -0.34
UBR4-209ENST00000465036 NBR1Q14596 966 aa12.9□□□□□ -0.34
UBR4-209ENST00000465036 RBM33Q96EV2 1170 aaKnown RBP12.9□□□□□ -0.34
UBR4-209ENST00000465036 SOWAHBA6NEL2 793 aa12.87□□□□□ -0.35
UBR4-209ENST00000465036 ZFRQ96KR1 1074 aaKnown RBP12.87□□□□□ -0.35
UBR4-209ENST00000465036 MAP3K7O43318 606 aa12.86□□□□□ -0.35
UBR4-209ENST00000465036 NYAP1Q6ZVC0 841 aa12.86□□□□□ -0.35
UBR4-209ENST00000465036 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
UBR4-209ENST00000465036 CERKQ8TCT0 537 aa12.85□□□□□ -0.35
UBR4-209ENST00000465036 RGS20O76081 388 aa12.84□□□□□ -0.35
UBR4-209ENST00000465036 TSR1Q2NL82 804 aaKnown RBP12.83□□□□□ -0.36
UBR4-209ENST00000465036 PACS2Q86VP3 889 aa12.82□□□□□ -0.36
UBR4-209ENST00000465036 TSKSQ9UJT2 592 aa12.81□□□□□ -0.36
UBR4-209ENST00000465036 ITGBL1O95965 494 aaPredicted RBP12.8□□□□□ -0.36
UBR4-209ENST00000465036 BCAMP50895 628 aa12.8□□□□□ -0.36
UBR4-209ENST00000465036 SEPT9Q9UHD8 586 aaPredicted RBP12.8□□□□□ -0.36
UBR4-209ENST00000465036 GRXCR2A6NFK2 248 aa12.77□□□□□ -0.37
UBR4-209ENST00000465036 OSBPP22059 807 aa12.77□□□□□ -0.37
UBR4-209ENST00000465036 PRIM1P49642 420 aaKnown RBP12.77□□□□□ -0.37
UBR4-209ENST00000465036 PRSS12P56730 875 aa12.77□□□□□ -0.37
UBR4-209ENST00000465036 CDCA7LQ96GN5 454 aa12.77□□□□□ -0.37
UBR4-209ENST00000465036 A0A0G2JS52 829 aa12.76□□□□□ -0.37
UBR4-209ENST00000465036 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.75□□□□□ -0.37
UBR4-209ENST00000465036 RBM27Q9P2N5 1060 aaKnown RBP12.75□□□□□ -0.37
UBR4-209ENST00000465036 LRCH3Q96II8 777 aa12.74□□□□□ -0.37
UBR4-209ENST00000465036 WBP1LQ9NX94 342 aa12.74□□□□□ -0.37
UBR4-209ENST00000465036 TSR3Q9UJK0 312 aaKnown RBP12.74□□□□□ -0.37
UBR4-209ENST00000465036 ARHGEF1Q92888 912 aaKnown RBP12.72□□□□□ -0.37
UBR4-209ENST00000465036 FAM198AQ9UFP1 575 aa12.71□□□□□ -0.37
UBR4-209ENST00000465036 TSHZ2Q9NRE2 1034 aa12.69□□□□□ -0.38
UBR4-209ENST00000465036 NBPF26B4DH59 902 aa12.68□□□□□ -0.38
UBR4-209ENST00000465036 TATDN2Q93075 761 aa12.68□□□□□ -0.38
UBR4-209ENST00000465036 HPS5Q9UPZ3 1129 aa12.68□□□□□ -0.38
UBR4-209ENST00000465036 TTC13Q8NBP0 860 aa12.66□□□□□ -0.38
UBR4-209ENST00000465036 CDHR5Q9HBB8 845 aa12.66□□□□□ -0.38
UBR4-209ENST00000465036 KCNC4Q03721 635 aa12.65□□□□□ -0.38
UBR4-209ENST00000465036 NPDC1Q9NQX5 325 aaPredicted RBP12.64□□□□□ -0.39
UBR4-209ENST00000465036 PNMA3Q9UL41 463 aa12.63□□□□□ -0.39
UBR4-209ENST00000465036 C3orf80F5H4A9 247 aa12.62□□□□□ -0.39
UBR4-209ENST00000465036 SMAPO00193 183 aa12.62□□□□□ -0.39
UBR4-209ENST00000465036 PPP4CP60510 307 aa12.62□□□□□ -0.39
UBR4-209ENST00000465036 SAMD7Q7Z3H4 446 aa12.62□□□□□ -0.39
UBR4-209ENST00000465036 KCNV2Q8TDN2 545 aa12.61□□□□□ -0.39
UBR4-209ENST00000465036 NUDT18Q6ZVK8 323 aa12.59□□□□□ -0.39
UBR4-209ENST00000465036 HDGFP51858 240 aaKnown RBP12.58□□□□□ -0.4
UBR4-209ENST00000465036 NECTIN2Q92692 538 aa12.56□□□□□ -0.4
UBR4-209ENST00000465036 MLLT3P42568 568 aaPredicted RBP12.55□□□□□ -0.4
UBR4-209ENST00000465036 PADI6Q6TGC4 694 aa12.55□□□□□ -0.4
UBR4-209ENST00000465036 P3H3Q8IVL6 736 aa12.55□□□□□ -0.4
UBR4-209ENST00000465036 TJAP1Q5JTD0 557 aa12.53□□□□□ -0.4
UBR4-209ENST00000465036 EYA1Q99502 592 aa12.52□□□□□ -0.41
UBR4-209ENST00000465036 IRX2Q9BZI1 471 aaPredicted RBP12.52□□□□□ -0.41
UBR4-209ENST00000465036 PTGDRQ13258 359 aa12.5□□□□□ -0.41
UBR4-209ENST00000465036 SLF2Q8IX21 1173 aa12.49□□□□□ -0.41
UBR4-209ENST00000465036 IL21Q9HBE4 155 aa12.49□□□□□ -0.41
UBR4-209ENST00000465036 SWT1Q5T5J6 900 aaKnown RBP12.46□□□□□ -0.41
UBR4-209ENST00000465036 MTRQ99707 1265 aa12.46□□□□□ -0.41
UBR4-209ENST00000465036 SLC4A3P48751 1232 aa12.45□□□□□ -0.42
UBR4-209ENST00000465036 APLP1P51693 650 aa12.45□□□□□ -0.42
UBR4-209ENST00000465036 RNF40O75150 1001 aa12.42□□□□□ -0.42
UBR4-209ENST00000465036 PLCB2Q00722 1185 aa12.41□□□□□ -0.42
UBR4-209ENST00000465036 RBM46Q8TBY0 533 aaKnown RBP12.41□□□□□ -0.42
UBR4-209ENST00000465036 PRR14Q9BWN1 585 aa12.41□□□□□ -0.42
UBR4-209ENST00000465036 DNAJB2P25686 324 aa12.4□□□□□ -0.42
UBR4-209ENST00000465036 ADGRG1Q9Y653 693 aa12.4□□□□□ -0.42
UBR4-209ENST00000465036 NUTM2FA1L443 756 aa12.38□□□□□ -0.43
UBR4-209ENST00000465036 SEMA3EO15041 775 aa12.38□□□□□ -0.43
UBR4-209ENST00000465036 FCHSD2O94868 740 aa12.37□□□□□ -0.43
UBR4-209ENST00000465036 ZNF516Q92618 1163 aa12.37□□□□□ -0.43
UBR4-209ENST00000465036 TMEM134Q9H6X4 195 aa12.37□□□□□ -0.43
UBR4-209ENST00000465036 PPP1R18Q6NYC8 613 aa12.35□□□□□ -0.43
UBR4-209ENST00000465036 TESPA1A2RU30 521 aaPredicted RBP12.33□□□□□ -0.44
UBR4-209ENST00000465036 LAPTM4AQ15012 233 aa12.33□□□□□ -0.44
UBR4-209ENST00000465036 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.33□□□□□ -0.44
UBR4-209ENST00000465036 SMYD5Q6GMV2 418 aa12.32□□□□□ -0.44
UBR4-209ENST00000465036 V9GY48 417 aaPredicted RBP12.32□□□□□ -0.44
UBR4-209ENST00000465036 RCCD1A6NED2 376 aa12.31□□□□□ -0.44
UBR4-209ENST00000465036 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms