RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 ST20-MTHFSA0A0A6YYL1 179 aa23.75■■□□□ 1.39
CCDC88B-204ENST00000463837 CHMP4AQ9BY43 222 aa23.75■■□□□ 1.39
CCDC88B-204ENST00000463837 CNTLNQ9NXG0 1405 aa23.74■■□□□ 1.39
CCDC88B-204ENST00000463837 CSPP1Q1MSJ5 1256 aa23.74■■□□□ 1.39
CCDC88B-204ENST00000463837 KIF21BO75037 1637 aa23.74■■□□□ 1.39
CCDC88B-204ENST00000463837 HMMRO75330 724 aa23.73■■□□□ 1.39
CCDC88B-204ENST00000463837 CCDC146Q8IYE0 955 aa23.73■■□□□ 1.39
CCDC88B-204ENST00000463837 FOXD4L1Q9NU39 408 aa23.73■■□□□ 1.39
CCDC88B-204ENST00000463837 UACAQ9BZF9 1416 aa23.72■■□□□ 1.39
CCDC88B-204ENST00000463837 CRBNQ96SW2 442 aa23.72■■□□□ 1.39
CCDC88B-204ENST00000463837 PHF14O94880 888 aa23.72■■□□□ 1.39
CCDC88B-204ENST00000463837 CCDC7Q96M83 1385 aa23.71■■□□□ 1.39
CCDC88B-204ENST00000463837 CCDC144AA2RUR9 1427 aa23.71■■□□□ 1.39
CCDC88B-204ENST00000463837 SOX12O15370 315 aa23.71■■□□□ 1.39
CCDC88B-204ENST00000463837 PLIN1O60240 522 aa23.69■■□□□ 1.38
CCDC88B-204ENST00000463837 CUX1P39880 1505 aa23.69■■□□□ 1.38
CCDC88B-204ENST00000463837 HSP90AA2PQ14568 343 aaPredicted RBP23.69■■□□□ 1.38
CCDC88B-204ENST00000463837 PANK3Q9H999 370 aa23.69■■□□□ 1.38
CCDC88B-204ENST00000463837 ST18O60284 1047 aa23.69■■□□□ 1.38
CCDC88B-204ENST00000463837 LMOD3Q0VAK6 560 aa23.68■■□□□ 1.38
CCDC88B-204ENST00000463837 TERF2IPQ9NYB0 399 aa23.68■■□□□ 1.38
CCDC88B-204ENST00000463837 TULP1O00294 542 aaPredicted RBP23.67■■□□□ 1.38
CCDC88B-204ENST00000463837 FGD6Q6ZV73 1430 aa23.65■■□□□ 1.38
CCDC88B-204ENST00000463837 HDAC5Q9UQL6 1122 aa23.63■■□□□ 1.37
CCDC88B-204ENST00000463837 STK26Q9P289 416 aa23.63■■□□□ 1.37
CCDC88B-204ENST00000463837 RRBP1Q9P2E9 1410 aaKnown RBP23.63■■□□□ 1.37
CCDC88B-204ENST00000463837 AAMPQ13685 434 aa23.63■■□□□ 1.37
CCDC88B-204ENST00000463837 ZKSCAN2Q63HK3 967 aa23.62■■□□□ 1.37
CCDC88B-204ENST00000463837 STK31Q9BXU1 1019 aa23.61■■□□□ 1.37
CCDC88B-204ENST00000463837 LRRC9Q6ZRR7 1453 aa23.61■■□□□ 1.37
CCDC88B-204ENST00000463837 HNRNPMP52272 730 aaKnown RBP eCLIP23.61■■□□□ 1.37
CCDC88B-204ENST00000463837 MYOM3Q5VTT5 1437 aa23.6■■□□□ 1.37
CCDC88B-204ENST00000463837 SPAG9O60271 1321 aaKnown RBP23.6■■□□□ 1.37
CCDC88B-204ENST00000463837 TPM4P67936 248 aa23.59■■□□□ 1.37
CCDC88B-204ENST00000463837 KIF7Q2M1P5 1343 aa23.59■■□□□ 1.37
CCDC88B-204ENST00000463837 GPATCH3Q96I76 525 aa23.58■■□□□ 1.37
CCDC88B-204ENST00000463837 MIA2Q96PC5 1412 aa23.57■■□□□ 1.36
CCDC88B-204ENST00000463837 VSIG10Q8N0Z9 540 aa23.57■■□□□ 1.36
CCDC88B-204ENST00000463837 NOL8Q76FK4 1167 aaKnown RBP23.56■■□□□ 1.36
CCDC88B-204ENST00000463837 CHMP5Q9NZZ3 219 aa23.56■■□□□ 1.36
CCDC88B-204ENST00000463837 ERICH3Q5RHP9 1530 aa23.56■■□□□ 1.36
CCDC88B-204ENST00000463837 BRD4O60885 1362 aaPredicted RBP23.56■■□□□ 1.36
CCDC88B-204ENST00000463837 DDX49Q9Y6V7 483 aaKnown RBP23.55■■□□□ 1.36
CCDC88B-204ENST00000463837 EID1Q9Y6B2 187 aa23.54■■□□□ 1.36
CCDC88B-204ENST00000463837 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 KIF3BO15066 747 aa23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 PAK3O75914 559 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 CSB-PGBD3P0DP91 1061 aa23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 GNL2Q13823 731 aaKnown RBP23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 FOXD4L5Q5VV16 416 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 FOXD4L4Q8WXT5 416 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-204ENST00000463837 TRIM6-TRIM34B2RNG4 842 aa23.52■■□□□ 1.36
CCDC88B-204ENST00000463837 IGF1RP08069 1367 aa23.52■■□□□ 1.36
CCDC88B-204ENST00000463837 DDX19BQ9UMR2 479 aa23.52■■□□□ 1.36
CCDC88B-204ENST00000463837 RRP7AQ9Y3A4 280 aaKnown RBP23.51■■□□□ 1.35
CCDC88B-204ENST00000463837 COG6Q9Y2V7 657 aa23.51■■□□□ 1.35
CCDC88B-204ENST00000463837 PRKCSHP14314 528 aaPredicted RBP23.5■■□□□ 1.35
CCDC88B-204ENST00000463837 BCL2L13Q9BXK5 485 aa23.5■■□□□ 1.35
CCDC88B-204ENST00000463837 ATP6V1DQ9Y5K8 247 aa23.49■■□□□ 1.35
CCDC88B-204ENST00000463837 WASHC2AQ641Q2 1341 aa23.49■■□□□ 1.35
CCDC88B-204ENST00000463837 JPH4Q96JJ6 628 aa23.49■■□□□ 1.35
CCDC88B-204ENST00000463837 STAC3Q96MF2 364 aa23.48■■□□□ 1.35
CCDC88B-204ENST00000463837 NFKBIBQ15653 356 aa23.47■■□□□ 1.35
CCDC88B-204ENST00000463837 CASKIN1Q8WXD9 1431 aa23.47■■□□□ 1.35
CCDC88B-204ENST00000463837 APAF1O14727 1248 aa23.46■■□□□ 1.35
CCDC88B-204ENST00000463837 FYCO1Q9BQS8 1478 aa23.46■■□□□ 1.35
CCDC88B-204ENST00000463837 TNNT3P45378 269 aaPredicted RBP23.46■■□□□ 1.35
CCDC88B-204ENST00000463837 KIF16BQ96L93 1317 aa23.46■■□□□ 1.35
CCDC88B-204ENST00000463837 ANKRD45Q5TZF3 282 aa23.46■■□□□ 1.35
CCDC88B-204ENST00000463837 CCDC34Q96HJ3 373 aa23.45■■□□□ 1.34
CCDC88B-204ENST00000463837 KIF3AQ9Y496 699 aa23.44■■□□□ 1.34
CCDC88B-204ENST00000463837 WASHC2CQ9Y4E1 1318 aa23.44■■□□□ 1.34
CCDC88B-204ENST00000463837 SLC4A10Q6U841 1118 aa23.43■■□□□ 1.34
CCDC88B-204ENST00000463837 DZIP1LQ8IYY4 767 aaKnown RBP23.42■■□□□ 1.34
CCDC88B-204ENST00000463837 REC8O95072 547 aa23.42■■□□□ 1.34
CCDC88B-204ENST00000463837 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.4■■□□□ 1.34
CCDC88B-204ENST00000463837 EVC2Q86UK5 1308 aa23.4■■□□□ 1.34
CCDC88B-204ENST00000463837 CHMP4CQ96CF2 233 aa23.4■■□□□ 1.34
CCDC88B-204ENST00000463837 FGD5Q6ZNL6 1462 aa23.38■■□□□ 1.33
CCDC88B-204ENST00000463837 RUNDC1Q96C34 613 aa23.38■■□□□ 1.33
CCDC88B-204ENST00000463837 NUCB2P80303 420 aa23.37■■□□□ 1.33
CCDC88B-204ENST00000463837 NCOA2Q15596 1464 aa23.37■■□□□ 1.33
CCDC88B-204ENST00000463837 HSP90B1P14625 803 aaKnown RBP23.37■■□□□ 1.33
CCDC88B-204ENST00000463837 MRE11P49959 708 aa23.37■■□□□ 1.33
CCDC88B-204ENST00000463837 TMX4Q9H1E5 349 aaPredicted RBP23.37■■□□□ 1.33
CCDC88B-204ENST00000463837 TRAK1Q9UPV9 953 aa23.37■■□□□ 1.33
CCDC88B-204ENST00000463837 ROCK1Q13464 1354 aa23.36■■□□□ 1.33
CCDC88B-204ENST00000463837 FOXD4L6Q3SYB3 417 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-204ENST00000463837 FOXD4L3Q6VB84 417 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-204ENST00000463837 NGDNQ8NEJ9 315 aaKnown RBP23.36■■□□□ 1.33
CCDC88B-204ENST00000463837 SMG6Q86US8 1419 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-204ENST00000463837 ARAP1Q96P48 1450 aa23.35■■□□□ 1.33
CCDC88B-204ENST00000463837 API5Q9BZZ5 524 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-204ENST00000463837 C22orf23Q9BZE7 217 aa23.34■■□□□ 1.33
CCDC88B-204ENST00000463837 FAM43AQ8N2R8 423 aa23.33■■□□□ 1.33
CCDC88B-204ENST00000463837 CCDC9Q9Y3X0 531 aaKnown RBP23.33■■□□□ 1.32
CCDC88B-204ENST00000463837 ELL2O00472 640 aaPredicted RBP23.32■■□□□ 1.32
CCDC88B-204ENST00000463837 GOLGA6L1Q8N7Z2 621 aa23.32■■□□□ 1.32
CCDC88B-204ENST00000463837 ZNF330Q9Y3S2 320 aaPredicted RBP23.31■■□□□ 1.32
CCDC88B-204ENST00000463837 VGFO15240 615 aaPredicted RBP23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms