RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 FAM161AQ3B820 660 aa9□□□□□ -0.97
SYNE1-216ENST00000461872 MAGI1Q96QZ7 1491 aaPredicted RBP9□□□□□ -0.97
SYNE1-216ENST00000461872 GOLGA2Q08379 1002 aa9□□□□□ -0.97
SYNE1-216ENST00000461872 RWDD1Q9H446 243 aaPredicted RBP9□□□□□ -0.97
SYNE1-216ENST00000461872 IPO8O15397 1037 aaKnown RBP9□□□□□ -0.97
SYNE1-216ENST00000461872 IRX6P78412 446 aaPredicted RBP9□□□□□ -0.97
SYNE1-216ENST00000461872 DCAF11Q8TEB1 546 aa9□□□□□ -0.97
SYNE1-216ENST00000461872 SYNJ2O15056 1496 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 RAD54L2Q9Y4B4 1467 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 CHMP4AQ9BY43 222 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 IL27Q8NEV9 243 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 E9PSI1 815 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 RALGAPBQ86X10 1494 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 KIF14Q15058 1648 aa8.99□□□□□ -0.97
SYNE1-216ENST00000461872 DNMT1P26358 1616 aaKnown RBP8.98□□□□□ -0.97
SYNE1-216ENST00000461872 ADGBQ8N7X0 1667 aa8.98□□□□□ -0.97
SYNE1-216ENST00000461872 CT47B1P0C2W7 299 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-216ENST00000461872 GBP4Q96PP9 640 aa8.97□□□□□ -0.97
SYNE1-216ENST00000461872 EFCAB2Q5VUJ9 269 aa8.97□□□□□ -0.97
SYNE1-216ENST00000461872 FTSJ3Q8IY81 847 aaKnown RBP8.97□□□□□ -0.97
SYNE1-216ENST00000461872 KDM2AQ9Y2K7 1162 aa8.97□□□□□ -0.97
SYNE1-216ENST00000461872 PDE4AP27815 886 aa8.97□□□□□ -0.97
SYNE1-216ENST00000461872 DDX11L8A8MPP1 907 aa8.96□□□□□ -0.97
SYNE1-216ENST00000461872 CNGB1Q14028 1251 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-216ENST00000461872 SKOR2Q2VWA4 1001 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-216ENST00000461872 ABCA5Q8WWZ7 1642 aa8.96□□□□□ -0.97
SYNE1-216ENST00000461872 GSE1Q14687 1217 aa8.96□□□□□ -0.97
SYNE1-216ENST00000461872 C9orf84Q5VXU9 1444 aa8.96□□□□□ -0.97
SYNE1-216ENST00000461872 HSCBQ8IWL3 235 aa8.96□□□□□ -0.98
SYNE1-216ENST00000461872 POLR1AO95602 1720 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-216ENST00000461872 NCLP19338 710 aaKnown RBP8.94□□□□□ -0.98
SYNE1-216ENST00000461872 ADGRL2O95490 1459 aa8.94□□□□□ -0.98
SYNE1-216ENST00000461872 CAMSAP2Q08AD1 1489 aa8.94□□□□□ -0.98
SYNE1-216ENST00000461872 NPM1P06748 294 aaKnown RBP eCLIP8.94□□□□□ -0.98
SYNE1-216ENST00000461872 ZMYM3Q14202 1370 aa8.93□□□□□ -0.98
SYNE1-216ENST00000461872 PNISRQ8TF01 805 aaKnown RBP8.93□□□□□ -0.98
SYNE1-216ENST00000461872 RAPGEF6Q8TEU7 1601 aa8.93□□□□□ -0.98
SYNE1-216ENST00000461872 UHRF1BP1Q6BDS2 1440 aa8.93□□□□□ -0.98
SYNE1-216ENST00000461872 WDR62O43379 1518 aa8.93□□□□□ -0.98
SYNE1-216ENST00000461872 PDE3AQ14432 1141 aa8.92□□□□□ -0.98
SYNE1-216ENST00000461872 KIF16BQ96L93 1317 aa8.92□□□□□ -0.98
SYNE1-216ENST00000461872 CENPJQ9HC77 1338 aaPredicted RBP8.92□□□□□ -0.98
SYNE1-216ENST00000461872 TNNT2P45379 298 aaPredicted RBP8.91□□□□□ -0.98
SYNE1-216ENST00000461872 DHX29Q7Z478 1369 aaKnown RBP8.91□□□□□ -0.98
SYNE1-216ENST00000461872 ST20-MTHFSA0A0A6YYL1 179 aa8.91□□□□□ -0.98
SYNE1-216ENST00000461872 ARID3CA6NKF2 412 aa8.91□□□□□ -0.98
SYNE1-216ENST00000461872 ADAMTS12P58397 1594 aa8.91□□□□□ -0.98
SYNE1-216ENST00000461872 ARHGEF11O15085 1522 aa8.9□□□□□ -0.98
SYNE1-216ENST00000461872 ABCC5O15440 1437 aa8.9□□□□□ -0.98
SYNE1-216ENST00000461872 ZNF428Q96B54 188 aa8.9□□□□□ -0.99
SYNE1-216ENST00000461872 KCNH8Q96L42 1107 aa8.9□□□□□ -0.99
SYNE1-216ENST00000461872 PTPRGP23470 1445 aa8.9□□□□□ -0.99
SYNE1-216ENST00000461872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.89□□□□□ -0.99
SYNE1-216ENST00000461872 LMOD3Q0VAK6 560 aa8.89□□□□□ -0.99
SYNE1-216ENST00000461872 SYAP1Q96A49 352 aaPredicted RBP8.89□□□□□ -0.99
SYNE1-216ENST00000461872 BACH2Q9BYV9 841 aa8.89□□□□□ -0.99
SYNE1-216ENST00000461872 GOLGA6L3A6NEY3 463 aa8.88□□□□□ -0.99
SYNE1-216ENST00000461872 MTERF4Q7Z6M4 381 aaKnown RBP8.88□□□□□ -0.99
SYNE1-216ENST00000461872 RNF123Q5XPI4 1314 aa8.87□□□□□ -0.99
SYNE1-216ENST00000461872 KIAA0556O60303 1618 aa8.87□□□□□ -0.99
SYNE1-216ENST00000461872 NPC1L1Q9UHC9 1359 aa8.87□□□□□ -0.99
SYNE1-216ENST00000461872 HDAC5Q9UQL6 1122 aa8.87□□□□□ -0.99
SYNE1-216ENST00000461872 LAS1LQ9Y4W2 734 aaKnown RBP8.87□□□□□ -0.99
SYNE1-216ENST00000461872 GRIN2AQ12879 1464 aa8.87□□□□□ -0.99
SYNE1-216ENST00000461872 NCBP3Q53F19 620 aaKnown RBP8.87□□□□□ -0.99
SYNE1-216ENST00000461872 MORC1Q86VD1 984 aa8.86□□□□□ -0.99
SYNE1-216ENST00000461872 MCCP23508 829 aa8.86□□□□□ -0.99
SYNE1-216ENST00000461872 JPH4Q96JJ6 628 aa8.86□□□□□ -0.99
SYNE1-216ENST00000461872 PBRM1Q86U86 1689 aa8.86□□□□□ -0.99
SYNE1-216ENST00000461872 C11orf95C9JLR9 678 aaPredicted RBP8.86□□□□□ -0.99
SYNE1-216ENST00000461872 ERBINQ96RT1 1412 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 TERF2IPQ9NYB0 399 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 URB2Q14146 1524 aaKnown RBP8.85□□□□□ -0.99
SYNE1-216ENST00000461872 PHF14O94880 888 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 RGS3P49796 1198 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 MAP7D2Q96T17 732 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 ARHGEF5Q12774 1597 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 FAM43AQ8N2R8 423 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 DDX19BQ9UMR2 479 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 NSD2O96028 1365 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 HDGFP51858 240 aaKnown RBP8.85□□□□□ -0.99
SYNE1-216ENST00000461872 CIZ1Q9ULV3 898 aaPredicted RBP8.85□□□□□ -0.99
SYNE1-216ENST00000461872 PARD3Q8TEW0 1356 aa8.85□□□□□ -0.99
SYNE1-216ENST00000461872 SPAG9O60271 1321 aaKnown RBP8.84□□□□□ -0.99
SYNE1-216ENST00000461872 CC2D1BQ5T0F9 858 aaKnown RBP8.84□□□□□ -0.99
SYNE1-216ENST00000461872 RGL3Q3MIN7 710 aa8.84□□□□□ -0.99
SYNE1-216ENST00000461872 LRPPRCP42704 1394 aaKnown RBP8.84□□□□□ -0.99
SYNE1-216ENST00000461872 MSNP26038 577 aaKnown RBP8.83□□□□□ -1
SYNE1-216ENST00000461872 HSP90AB1P08238 724 aaKnown RBP8.83□□□□□ -1
SYNE1-216ENST00000461872 CDK13Q14004 1512 aaKnown RBP8.83□□□□□ -1
SYNE1-216ENST00000461872 SALL2Q9Y467 1007 aaPredicted RBP8.83□□□□□ -1
SYNE1-216ENST00000461872 ARHGAP5Q13017 1502 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 CHAF1AQ13111 956 aaPredicted RBP8.82□□□□□ -1
SYNE1-216ENST00000461872 GPATCH8Q9UKJ3 1502 aaKnown RBP8.82□□□□□ -1
SYNE1-216ENST00000461872 NKTRP30414 1462 aaKnown RBP8.82□□□□□ -1
SYNE1-216ENST00000461872 ZKSCAN2Q63HK3 967 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 CHMP5Q9NZZ3 219 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 PDIA4P13667 645 aaKnown RBP8.82□□□□□ -1
SYNE1-216ENST00000461872 DUOX2Q9NRD8 1548 aa8.82□□□□□ -1
SYNE1-216ENST00000461872 PANK3Q9H999 370 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms