RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 RNF166Q96A37 237 aaPredicted RBP14.01□□□□□ -0.17
USP54-208ENST00000461520 KCNH8Q96L42 1107 aa14.01□□□□□ -0.17
USP54-208ENST00000461520 CUX2O14529 1486 aa13.99□□□□□ -0.17
USP54-208ENST00000461520 ATAD2BQ9ULI0 1458 aa13.99□□□□□ -0.17
USP54-208ENST00000461520 PTPREP23469 700 aa13.99□□□□□ -0.17
USP54-208ENST00000461520 PTGER2P43116 358 aa13.99□□□□□ -0.17
USP54-208ENST00000461520 ERCC6Q03468 1493 aa13.99□□□□□ -0.17
USP54-208ENST00000461520 SMARCA4P51532 1647 aa13.98□□□□□ -0.17
USP54-208ENST00000461520 TK2O00142 265 aa13.97□□□□□ -0.17
USP54-208ENST00000461520 PHF14O94880 888 aa13.97□□□□□ -0.17
USP54-208ENST00000461520 PLCB2Q00722 1185 aa13.97□□□□□ -0.17
USP54-208ENST00000461520 DDX12PQ92771 950 aa13.97□□□□□ -0.17
USP54-208ENST00000461520 SMARCA2P51531 1590 aa13.96□□□□□ -0.17
USP54-208ENST00000461520 TYW1BQ6NUM6 668 aa13.96□□□□□ -0.17
USP54-208ENST00000461520 PDIA6Q15084 440 aa13.95□□□□□ -0.18
USP54-208ENST00000461520 BAZ1AQ9NRL2 1556 aaPredicted RBP13.95□□□□□ -0.18
USP54-208ENST00000461520 HMGXB3Q12766 1538 aa13.94□□□□□ -0.18
USP54-208ENST00000461520 HRO43593 1189 aa13.93□□□□□ -0.18
USP54-208ENST00000461520 VPS9D1Q9Y2B5 631 aa13.93□□□□□ -0.18
USP54-208ENST00000461520 SPDYE16A6NNV3 312 aaPredicted RBP13.92□□□□□ -0.18
USP54-208ENST00000461520 FBXW7Q969H0 707 aa13.92□□□□□ -0.18
USP54-208ENST00000461520 ARIH1Q9Y4X5 557 aaPredicted RBP13.92□□□□□ -0.18
USP54-208ENST00000461520 RBM33Q96EV2 1170 aaKnown RBP13.9□□□□□ -0.18
USP54-208ENST00000461520 EPAS1Q99814 870 aa13.9□□□□□ -0.18
USP54-208ENST00000461520 ZBED2Q9BTP6 218 aa13.89□□□□□ -0.19
USP54-208ENST00000461520 COL9A1P20849 921 aa13.88□□□□□ -0.19
USP54-208ENST00000461520 SLC4A5Q9BY07 1137 aa13.87□□□□□ -0.19
USP54-208ENST00000461520 PEG3Q9GZU2 1588 aa13.87□□□□□ -0.19
USP54-208ENST00000461520 NBR1Q14596 966 aa13.86□□□□□ -0.19
USP54-208ENST00000461520 C6orf132Q5T0Z8 1188 aa13.86□□□□□ -0.19
USP54-208ENST00000461520 BAZ1BQ9UIG0 1483 aaKnown RBP13.86□□□□□ -0.19
USP54-208ENST00000461520 NESP48681 1621 aa13.86□□□□□ -0.19
USP54-208ENST00000461520 GRXCR2A6NFK2 248 aa13.85□□□□□ -0.19
USP54-208ENST00000461520 STAC3Q96MF2 364 aa13.85□□□□□ -0.19
USP54-208ENST00000461520 PPP1R3GB7ZBB8 358 aa13.84□□□□□ -0.19
USP54-208ENST00000461520 KCNV2Q8TDN2 545 aa13.83□□□□□ -0.2
USP54-208ENST00000461520 PROX2Q3B8N5 592 aa13.82□□□□□ -0.2
USP54-208ENST00000461520 MROH2BQ7Z745 1585 aa13.82□□□□□ -0.2
USP54-208ENST00000461520 BHMG1C9JSJ3 638 aaPredicted RBP13.81□□□□□ -0.2
USP54-208ENST00000461520 MAP3K7O43318 606 aa13.8□□□□□ -0.2
USP54-208ENST00000461520 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
USP54-208ENST00000461520 TSR1Q2NL82 804 aaKnown RBP13.8□□□□□ -0.2
USP54-208ENST00000461520 HAP1P54257 671 aaPredicted RBP13.79□□□□□ -0.2
USP54-208ENST00000461520 EN1Q05925 392 aaPredicted RBP13.79□□□□□ -0.2
USP54-208ENST00000461520 ARHGEF1Q92888 912 aaKnown RBP13.78□□□□□ -0.2
USP54-208ENST00000461520 KCTD12Q96CX2 325 aaKnown RBP13.78□□□□□ -0.2
USP54-208ENST00000461520 THOC2Q8NI27 1593 aaKnown RBP13.75□□□□□ -0.21
USP54-208ENST00000461520 OSBPP22059 807 aa13.74□□□□□ -0.21
USP54-208ENST00000461520 MRPL50Q8N5N7 158 aaKnown RBP13.74□□□□□ -0.21
USP54-208ENST00000461520 RABGEF1Q9UJ41 708 aa13.73□□□□□ -0.21
USP54-208ENST00000461520 KIAA1468Q9P260 1216 aa13.72□□□□□ -0.21
USP54-208ENST00000461520 LAMC3Q9Y6N6 1575 aa13.71□□□□□ -0.21
USP54-208ENST00000461520 NBPF3Q9H094 633 aa13.71□□□□□ -0.21
USP54-208ENST00000461520 KIF21AQ7Z4S6 1674 aa13.7□□□□□ -0.22
USP54-208ENST00000461520 MLLT3P42568 568 aaPredicted RBP13.7□□□□□ -0.22
USP54-208ENST00000461520 HCSTQ9UBK5 93 aa13.7□□□□□ -0.22
USP54-208ENST00000461520 GOLGA8CPA6NN73 597 aa13.69□□□□□ -0.22
USP54-208ENST00000461520 TRIM6-TRIM34B2RNG4 842 aa13.68□□□□□ -0.22
USP54-208ENST00000461520 P3H3Q8IVL6 736 aa13.67□□□□□ -0.22
USP54-208ENST00000461520 CDHR5Q9HBB8 845 aa13.67□□□□□ -0.22
USP54-208ENST00000461520 WNT2BQ93097 391 aa13.66□□□□□ -0.22
USP54-208ENST00000461520 KDM2AQ9Y2K7 1162 aa13.66□□□□□ -0.22
USP54-208ENST00000461520 ONECUT3O60422 494 aaPredicted RBP13.65□□□□□ -0.22
USP54-208ENST00000461520 PTPN5P54829 565 aa13.65□□□□□ -0.22
USP54-208ENST00000461520 SEPT9Q9UHD8 586 aaPredicted RBP13.65□□□□□ -0.22
USP54-208ENST00000461520 PDS5BQ9NTI5 1447 aa13.64□□□□□ -0.23
USP54-208ENST00000461520 WIZO95785 1651 aa13.64□□□□□ -0.23
USP54-208ENST00000461520 TSKSQ9UJT2 592 aa13.64□□□□□ -0.23
USP54-208ENST00000461520 CADPSQ9ULU8 1353 aa13.62□□□□□ -0.23
USP54-208ENST00000461520 THSD4Q6ZMP0 1018 aa13.62□□□□□ -0.23
USP54-208ENST00000461520 CDCA7LQ96GN5 454 aa13.62□□□□□ -0.23
USP54-208ENST00000461520 SEMA3EO15041 775 aa13.61□□□□□ -0.23
USP54-208ENST00000461520 PRSS12P56730 875 aa13.61□□□□□ -0.23
USP54-208ENST00000461520 FAM198AQ9UFP1 575 aa13.6□□□□□ -0.23
USP54-208ENST00000461520 LAPTM4BQ86VI4 370 aa13.59□□□□□ -0.23
USP54-208ENST00000461520 PACS2Q86VP3 889 aa13.59□□□□□ -0.23
USP54-208ENST00000461520 CERKQ8TCT0 537 aa13.59□□□□□ -0.23
USP54-208ENST00000461520 RSF1Q96T23 1441 aaPredicted RBP13.57□□□□□ -0.24
USP54-208ENST00000461520 ZFRQ96KR1 1074 aaKnown RBP13.57□□□□□ -0.24
USP54-208ENST00000461520 NPDC1Q9NQX5 325 aaPredicted RBP13.57□□□□□ -0.24
USP54-208ENST00000461520 SMAPO00193 183 aa13.56□□□□□ -0.24
USP54-208ENST00000461520 ANKK1Q8NFD2 765 aa13.56□□□□□ -0.24
USP54-208ENST00000461520 C3orf80F5H4A9 247 aa13.55□□□□□ -0.24
USP54-208ENST00000461520 BCAMP50895 628 aa13.54□□□□□ -0.24
USP54-208ENST00000461520 FAM98CQ17RN3 349 aaKnown RBP13.54□□□□□ -0.24
USP54-208ENST00000461520 MRC2Q9UBG0 1479 aa13.53□□□□□ -0.24
USP54-208ENST00000461520 PLA2G2EQ9NZK7 142 aa13.52□□□□□ -0.25
USP54-208ENST00000461520 WDR62O43379 1518 aa13.51□□□□□ -0.25
USP54-208ENST00000461520 SOWAHBA6NEL2 793 aa13.5□□□□□ -0.25
USP54-208ENST00000461520 PADI6Q6TGC4 694 aa13.5□□□□□ -0.25
USP54-208ENST00000461520 VSIG10Q8N0Z9 540 aa13.5□□□□□ -0.25
USP54-208ENST00000461520 TATDN2Q93075 761 aa13.5□□□□□ -0.25
USP54-208ENST00000461520 TOP2AP11388 1531 aaKnown RBP13.49□□□□□ -0.25
USP54-208ENST00000461520 PNMA3Q9UL41 463 aa13.49□□□□□ -0.25
USP54-208ENST00000461520 NUTM2FA1L443 756 aa13.48□□□□□ -0.25
USP54-208ENST00000461520 NUDT18Q6ZVK8 323 aa13.48□□□□□ -0.25
USP54-208ENST00000461520 CFTRP13569 1480 aa13.48□□□□□ -0.25
USP54-208ENST00000461520 TESPA1A2RU30 521 aaPredicted RBP13.47□□□□□ -0.25
USP54-208ENST00000461520 TTC13Q8NBP0 860 aa13.47□□□□□ -0.25
USP54-208ENST00000461520 RBM27Q9P2N5 1060 aaKnown RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms