RNA–Protein interactions for RNA: ENST00000461326.1

CLK1-206, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 435 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-206ENST00000461326 LAPTM4BQ86VI4 370 aa9.78□□□□□ -0.84
CLK1-206ENST00000461326 GTPBP6O43824 516 aaPredicted RBP9.77□□□□□ -0.85
CLK1-206ENST00000461326 PROX2Q3B8N5 592 aa9.77□□□□□ -0.85
CLK1-206ENST00000461326 TYW1BQ6NUM6 668 aa9.77□□□□□ -0.85
CLK1-206ENST00000461326 PHF14O94880 888 aa9.76□□□□□ -0.85
CLK1-206ENST00000461326 SOWAHBA6NEL2 793 aa9.75□□□□□ -0.85
CLK1-206ENST00000461326 COL9A1P20849 921 aa9.75□□□□□ -0.85
CLK1-206ENST00000461326 EMILIN3Q9NT22 766 aa9.75□□□□□ -0.85
CLK1-206ENST00000461326 BCAMP50895 628 aa9.74□□□□□ -0.85
CLK1-206ENST00000461326 ONECUT3O60422 494 aaPredicted RBP9.72□□□□□ -0.85
CLK1-206ENST00000461326 ZFRQ96KR1 1074 aaKnown RBP9.72□□□□□ -0.85
CLK1-206ENST00000461326 KIAA1468Q9P260 1216 aa9.72□□□□□ -0.85
CLK1-206ENST00000461326 KCNC4Q03721 635 aa9.7□□□□□ -0.86
CLK1-206ENST00000461326 EPAS1Q99814 870 aa9.7□□□□□ -0.86
CLK1-206ENST00000461326 Q6ZNB5 142 aa9.68□□□□□ -0.86
CLK1-206ENST00000461326 C6orf132Q5T0Z8 1188 aa9.67□□□□□ -0.86
CLK1-206ENST00000461326 WBP1LQ9NX94 342 aa9.67□□□□□ -0.86
CLK1-206ENST00000461326 FAM98CQ17RN3 349 aaKnown RBP9.66□□□□□ -0.86
CLK1-206ENST00000461326 SEPT9Q9UHD8 586 aaPredicted RBP9.66□□□□□ -0.86
CLK1-206ENST00000461326 TRIM6-TRIM34B2RNG4 842 aa9.65□□□□□ -0.86
CLK1-206ENST00000461326 LRCH3Q96II8 777 aa9.65□□□□□ -0.86
CLK1-206ENST00000461326 TSR3Q9UJK0 312 aaKnown RBP9.65□□□□□ -0.86
CLK1-206ENST00000461326 DCAF8L2P0C7V8 631 aa9.64□□□□□ -0.87
CLK1-206ENST00000461326 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.64□□□□□ -0.87
CLK1-206ENST00000461326 CAMK2BQ13554 666 aa9.62□□□□□ -0.87
CLK1-206ENST00000461326 HPS5Q9UPZ3 1129 aa9.62□□□□□ -0.87
CLK1-206ENST00000461326 DPYSL4O14531 572 aa9.61□□□□□ -0.87
CLK1-206ENST00000461326 LAPTM4AQ15012 233 aa9.61□□□□□ -0.87
CLK1-206ENST00000461326 CADPS2Q86UW7 1296 aa9.61□□□□□ -0.87
CLK1-206ENST00000461326 RBM33Q96EV2 1170 aaKnown RBP9.61□□□□□ -0.87
CLK1-206ENST00000461326 PACS2Q86VP3 889 aa9.59□□□□□ -0.87
CLK1-206ENST00000461326 DDX12PQ92771 950 aa9.57□□□□□ -0.88
CLK1-206ENST00000461326 SLC24A1O60721 1099 aa9.55□□□□□ -0.88
CLK1-206ENST00000461326 PPP4CP60510 307 aa9.55□□□□□ -0.88
CLK1-206ENST00000461326 EN1Q05925 392 aaPredicted RBP9.55□□□□□ -0.88
CLK1-206ENST00000461326 MAP3K7O43318 606 aa9.54□□□□□ -0.88
CLK1-206ENST00000461326 NBR1Q14596 966 aa9.54□□□□□ -0.88
CLK1-206ENST00000461326 TSKSQ9UJT2 592 aa9.52□□□□□ -0.89
CLK1-206ENST00000461326 GFRA3O60609 400 aa9.51□□□□□ -0.89
CLK1-206ENST00000461326 TSR1Q2NL82 804 aaKnown RBP9.5□□□□□ -0.89
CLK1-206ENST00000461326 PDIA6Q15084 440 aa9.49□□□□□ -0.89
CLK1-206ENST00000461326 TRAF7Q6Q0C0 670 aa9.49□□□□□ -0.89
CLK1-206ENST00000461326 CERKQ8TCT0 537 aa9.49□□□□□ -0.89
CLK1-206ENST00000461326 SPDYE16A6NNV3 312 aaPredicted RBP9.48□□□□□ -0.89
CLK1-206ENST00000461326 SAMD7Q7Z3H4 446 aa9.48□□□□□ -0.89
CLK1-206ENST00000461326 CDCA7LQ96GN5 454 aa9.48□□□□□ -0.89
CLK1-206ENST00000461326 TJAP1Q5JTD0 557 aa9.47□□□□□ -0.89
CLK1-206ENST00000461326 PRKD2Q9BZL6 878 aa9.47□□□□□ -0.89
CLK1-206ENST00000461326 IL21Q9HBE4 155 aa9.47□□□□□ -0.89
CLK1-206ENST00000461326 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
CLK1-206ENST00000461326 PRSS12P56730 875 aa9.46□□□□□ -0.9
CLK1-206ENST00000461326 SMAPO00193 183 aa9.45□□□□□ -0.9
CLK1-206ENST00000461326 NRG2O14511 850 aaPredicted RBP9.45□□□□□ -0.9
CLK1-206ENST00000461326 HDGFP51858 240 aaKnown RBP9.45□□□□□ -0.9
CLK1-206ENST00000461326 MTRQ99707 1265 aa9.45□□□□□ -0.9
CLK1-206ENST00000461326 PNMA3Q9UL41 463 aa9.44□□□□□ -0.9
CLK1-206ENST00000461326 V9GY48 417 aaPredicted RBP9.44□□□□□ -0.9
CLK1-206ENST00000461326 PPP1R18Q6NYC8 613 aa9.43□□□□□ -0.9
CLK1-206ENST00000461326 RNF40O75150 1001 aa9.42□□□□□ -0.9
CLK1-206ENST00000461326 NECTIN2Q92692 538 aa9.42□□□□□ -0.9
CLK1-206ENST00000461326 TATDN2Q93075 761 aa9.42□□□□□ -0.9
CLK1-206ENST00000461326 LCE2BO14633 110 aa9.41□□□□□ -0.9
CLK1-206ENST00000461326 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.41□□□□□ -0.9
CLK1-206ENST00000461326 FAM198AQ9UFP1 575 aa9.4□□□□□ -0.9
CLK1-206ENST00000461326 GRXCR2A6NFK2 248 aa9.38□□□□□ -0.91
CLK1-206ENST00000461326 GGCXP38435 758 aa9.38□□□□□ -0.91
CLK1-206ENST00000461326 RBM27Q9P2N5 1060 aaKnown RBP9.38□□□□□ -0.91
CLK1-206ENST00000461326 NUDT18Q6ZVK8 323 aa9.37□□□□□ -0.91
CLK1-206ENST00000461326 BBXQ8WY36 941 aaPredicted RBP9.37□□□□□ -0.91
CLK1-206ENST00000461326 E2F4Q16254 413 aa9.36□□□□□ -0.91
CLK1-206ENST00000461326 ZNF516Q92618 1163 aa9.36□□□□□ -0.91
CLK1-206ENST00000461326 SLC4A3P48751 1232 aa9.35□□□□□ -0.91
CLK1-206ENST00000461326 APLP1P51693 650 aa9.35□□□□□ -0.91
CLK1-206ENST00000461326 PDZRN3Q9UPQ7 1066 aa9.35□□□□□ -0.91
CLK1-206ENST00000461326 C3orf80F5H4A9 247 aa9.34□□□□□ -0.91
CLK1-206ENST00000461326 SLF2Q8IX21 1173 aa9.34□□□□□ -0.91
CLK1-206ENST00000461326 ARIH1Q9Y4X5 557 aaPredicted RBP9.34□□□□□ -0.91
CLK1-206ENST00000461326 PRIM1P49642 420 aaKnown RBP9.33□□□□□ -0.92
CLK1-206ENST00000461326 WDR70Q9NW82 654 aa9.33□□□□□ -0.92
CLK1-206ENST00000461326 ZNF787Q6DD87 383 aa9.32□□□□□ -0.92
CLK1-206ENST00000461326 CDHR5Q9HBB8 845 aa9.32□□□□□ -0.92
CLK1-206ENST00000461326 TMUB1Q9BVT8 246 aa9.31□□□□□ -0.92
CLK1-206ENST00000461326 OSBPP22059 807 aa9.3□□□□□ -0.92
CLK1-206ENST00000461326 COPS2P61201 443 aa9.3□□□□□ -0.92
CLK1-206ENST00000461326 SWT1Q5T5J6 900 aaKnown RBP9.3□□□□□ -0.92
CLK1-206ENST00000461326 SPRYD3Q8NCJ5 442 aa9.3□□□□□ -0.92
CLK1-206ENST00000461326 NKX2-3Q8TAU0 364 aa9.3□□□□□ -0.92
CLK1-206ENST00000461326 PRR14Q9BWN1 585 aa9.3□□□□□ -0.92
CLK1-206ENST00000461326 PADI6Q6TGC4 694 aa9.27□□□□□ -0.93
CLK1-206ENST00000461326 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.27□□□□□ -0.93
CLK1-206ENST00000461326 ZPR1O75312 459 aa9.26□□□□□ -0.93
CLK1-206ENST00000461326 TTC13Q8NBP0 860 aa9.26□□□□□ -0.93
CLK1-206ENST00000461326 PCDHB3Q9Y5E6 796 aa9.24□□□□□ -0.93
CLK1-206ENST00000461326 SLC19A1P41440 591 aa9.21□□□□□ -0.94
CLK1-206ENST00000461326 NPDC1Q9NQX5 325 aaPredicted RBP9.21□□□□□ -0.94
CLK1-206ENST00000461326 PKDCCQ504Y2 493 aa9.2□□□□□ -0.94
CLK1-206ENST00000461326 ZNF775Q96BV0 537 aaPredicted RBP9.2□□□□□ -0.94
CLK1-206ENST00000461326 EYA1Q99502 592 aa9.2□□□□□ -0.94
CLK1-206ENST00000461326 RNF223E7ERA6 249 aa9.19□□□□□ -0.94
CLK1-206ENST00000461326 BLOC1S3Q6QNY0 202 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms