RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	TET3	O43151	1660 aa		12.71	□□□□□ -0.38
SYNE1-215	ENST00000460912	FAM135A	Q9P2D6	1515 aa		12.71	□□□□□ -0.38
SYNE1-215	ENST00000460912	IFT172	Q9UG01	1749 aa		12.71	□□□□□ -0.38
SYNE1-215	ENST00000460912	AGL	P35573	1532 aa		12.7	□□□□□ -0.38
SYNE1-215	ENST00000460912	CEP152	O94986	1710 aa		12.69	□□□□□ -0.38
SYNE1-215	ENST00000460912	PIK3C2B	O00750	1634 aa		12.69	□□□□□ -0.38
SYNE1-215	ENST00000460912	ITGAE	P38570	1179 aa		12.68	□□□□□ -0.38
SYNE1-215	ENST00000460912	MROH2A	A6NES4	1674 aa		12.68	□□□□□ -0.38
SYNE1-215	ENST00000460912	SPHKAP	Q2M3C7	1700 aa		12.67	□□□□□ -0.38
SYNE1-215	ENST00000460912	CAMSAP1	Q5T5Y3	1602 aa		12.66	□□□□□ -0.38
SYNE1-215	ENST00000460912	ATP10A	O60312	1499 aa		12.65	□□□□□ -0.38
SYNE1-215	ENST00000460912	CYB5RL	Q6IPT4	315 aa		12.65	□□□□□ -0.39
SYNE1-215	ENST00000460912	KCNH8	Q96L42	1107 aa		12.64	□□□□□ -0.39
SYNE1-215	ENST00000460912	ARID3C	A6NKF2	412 aa		12.64	□□□□□ -0.39
SYNE1-215	ENST00000460912	RSPH4A	Q5TD94	716 aa		12.63	□□□□□ -0.39
SYNE1-215	ENST00000460912	LAMC1	P11047	1609 aa		12.62	□□□□□ -0.39
SYNE1-215	ENST00000460912	UHRF1BP1	Q6BDS2	1440 aa		12.62	□□□□□ -0.39
SYNE1-215	ENST00000460912	SCAPER	Q9BY12	1400 aa		12.61	□□□□□ -0.39
SYNE1-215	ENST00000460912	EFCAB6	Q5THR3	1501 aa		12.61	□□□□□ -0.39
SYNE1-215	ENST00000460912	CFDP1	Q9UEE9	299 aa	Predicted RBP	12.61	□□□□□ -0.39
SYNE1-215	ENST00000460912	KDM5A	P29375	1690 aa	Known RBP	12.6	□□□□□ -0.39
SYNE1-215	ENST00000460912	CCER2	I3L3R5	266 aa		12.6	□□□□□ -0.39
SYNE1-215	ENST00000460912	MYT1	Q01538	1121 aa		12.59	□□□□□ -0.39
SYNE1-215	ENST00000460912	TRPM1	Q7Z4N2	1603 aa		12.58	□□□□□ -0.39
SYNE1-215	ENST00000460912	PREX1	Q8TCU6	1659 aa		12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	MPHOSPH9	Q99550	1183 aa		12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	ABCC3	O15438	1527 aa		12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	EFCAB2	Q5VUJ9	269 aa		12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	PLA2R1	Q13018	1463 aa		12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	ADAMTSL3	P82987	1691 aa		12.57	□□□□□ -0.4
SYNE1-215	ENST00000460912	TONSL	Q96HA7	1378 aa		12.56	□□□□□ -0.4
SYNE1-215	ENST00000460912	TRPM2	O94759	1503 aa		12.56	□□□□□ -0.4
SYNE1-215	ENST00000460912	ANKRD50	Q9ULJ7	1429 aa		12.56	□□□□□ -0.4
SYNE1-215	ENST00000460912	ANKRD30A	Q9BXX3	1397 aa		12.56	□□□□□ -0.4
SYNE1-215	ENST00000460912	WASHC2A	Q641Q2	1341 aa		12.56	□□□□□ -0.4
SYNE1-215	ENST00000460912	A2M	P01023	1474 aa		12.55	□□□□□ -0.4
SYNE1-215	ENST00000460912	SYNM	O15061	1565 aa		12.55	□□□□□ -0.4
SYNE1-215	ENST00000460912	PTPRT	O14522	1441 aa		12.55	□□□□□ -0.4
SYNE1-215	ENST00000460912	YEATS2	Q9ULM3	1422 aa		12.55	□□□□□ -0.4
SYNE1-215	ENST00000460912	KIF15	Q9NS87	1388 aa		12.55	□□□□□ -0.4
SYNE1-215	ENST00000460912	CLTCL1	P53675	1640 aa		12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	DHX29	Q7Z478	1369 aa	Known RBP	12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	HNRNPM	P52272	730 aa	Known RBP eCLIP	12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	SUPT16H	Q9Y5B9	1047 aa	Known RBP	12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	YTHDC1	Q96MU7	727 aa	Known RBP	12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	CNTLN	Q9NXG0	1405 aa		12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	CLTC	Q00610	1675 aa	Known RBP	12.54	□□□□□ -0.4
SYNE1-215	ENST00000460912	RALGAPB	Q86X10	1494 aa		12.53	□□□□□ -0.4
SYNE1-215	ENST00000460912	PPL	O60437	1756 aa		12.52	□□□□□ -0.41
SYNE1-215	ENST00000460912	RRP7BP	Q9NSQ0	103 aa		12.51	□□□□□ -0.41
SYNE1-215	ENST00000460912	MYO5B	Q9ULV0	1848 aa		12.51	□□□□□ -0.41
SYNE1-215	ENST00000460912	SETD1A	O15047	1707 aa	Known RBP	12.51	□□□□□ -0.41
SYNE1-215	ENST00000460912	NBPF8	Q3BBV2	869 aa		12.5	□□□□□ -0.41
SYNE1-215	ENST00000460912	C3	P01024	1663 aa		12.5	□□□□□ -0.41
SYNE1-215	ENST00000460912	SPATA31D1	Q6ZQQ2	1576 aa		12.5	□□□□□ -0.41
SYNE1-215	ENST00000460912	ARHGAP31	Q2M1Z3	1444 aa		12.5	□□□□□ -0.41
SYNE1-215	ENST00000460912	C11orf95	C9JLR9	678 aa	Predicted RBP	12.5	□□□□□ -0.41
SYNE1-215	ENST00000460912	KIAA1210	Q9ULL0	1709 aa		12.49	□□□□□ -0.41
SYNE1-215	ENST00000460912	FER1L4	A9Z1Z3	1794 aa		12.49	□□□□□ -0.41
SYNE1-215	ENST00000460912	DDX10	Q13206	875 aa	Known RBP	12.49	□□□□□ -0.41
SYNE1-215	ENST00000460912	NPM1	P06748	294 aa	Known RBP eCLIP	12.48	□□□□□ -0.41
SYNE1-215	ENST00000460912	CCDC7	Q96M83	1385 aa		12.48	□□□□□ -0.41
SYNE1-215	ENST00000460912	ZNF142	P52746	1687 aa	Predicted RBP	12.48	□□□□□ -0.41
SYNE1-215	ENST00000460912	L3MBTL2	Q969R5	705 aa		12.47	□□□□□ -0.41
SYNE1-215	ENST00000460912	KIF1B	O60333	1816 aa		12.47	□□□□□ -0.41
SYNE1-215	ENST00000460912	ADGRB3	O60242	1522 aa		12.46	□□□□□ -0.41
SYNE1-215	ENST00000460912	TMEM131L	A2VDJ0	1609 aa		12.46	□□□□□ -0.41
SYNE1-215	ENST00000460912	AFAP1	Q8N556	730 aa		12.46	□□□□□ -0.42
SYNE1-215	ENST00000460912	FAM69C	Q0P6D2	419 aa		12.46	□□□□□ -0.42
SYNE1-215	ENST00000460912	HSPA5	P11021	654 aa	Known RBP	12.45	□□□□□ -0.42
SYNE1-215	ENST00000460912	IQGAP1	P46940	1657 aa		12.44	□□□□□ -0.42
SYNE1-215	ENST00000460912	NOS1	P29475	1434 aa		12.44	□□□□□ -0.42
SYNE1-215	ENST00000460912	CHIC2	Q9UKJ5	165 aa		12.44	□□□□□ -0.42
SYNE1-215	ENST00000460912	MADD	Q8WXG6	1647 aa		12.44	□□□□□ -0.42
SYNE1-215	ENST00000460912	NRXN1	Q9ULB1	1477 aa		12.44	□□□□□ -0.42
SYNE1-215	ENST00000460912	UBR1	Q8IWV7	1749 aa		12.42	□□□□□ -0.42
SYNE1-215	ENST00000460912	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.42	□□□□□ -0.42
SYNE1-215	ENST00000460912	SPAG9	O60271	1321 aa	Known RBP	12.41	□□□□□ -0.42
SYNE1-215	ENST00000460912	FOXD1	Q16676	465 aa		12.4	□□□□□ -0.42
SYNE1-215	ENST00000460912	GPRASP1	Q5JY77	1395 aa		12.39	□□□□□ -0.43
SYNE1-215	ENST00000460912	NRXN3	Q9Y4C0	1643 aa		12.39	□□□□□ -0.43
SYNE1-215	ENST00000460912	NPAT	Q14207	1427 aa		12.38	□□□□□ -0.43
SYNE1-215	ENST00000460912	KIF7	Q2M1P5	1343 aa		12.38	□□□□□ -0.43
SYNE1-215	ENST00000460912	MYOM1	P52179	1685 aa		12.38	□□□□□ -0.43
SYNE1-215	ENST00000460912	MYO3A	Q8NEV4	1616 aa		12.37	□□□□□ -0.43
SYNE1-215	ENST00000460912	NEXMIF	Q5QGS0	1516 aa		12.37	□□□□□ -0.43
SYNE1-215	ENST00000460912	RAPGEF3	O95398	923 aa		12.36	□□□□□ -0.43
SYNE1-215	ENST00000460912	ARID4B	Q4LE39	1312 aa	Predicted RBP	12.36	□□□□□ -0.43
SYNE1-215	ENST00000460912	PRAG1	Q86YV5	1406 aa		12.36	□□□□□ -0.43
SYNE1-215	ENST00000460912	UGGT1	Q9NYU2	1555 aa		12.35	□□□□□ -0.43
SYNE1-215	ENST00000460912	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.35	□□□□□ -0.43
SYNE1-215	ENST00000460912	CCDC184	Q52MB2	194 aa		12.34	□□□□□ -0.43
SYNE1-215	ENST00000460912	ERVK-7	P63135	1459 aa		12.34	□□□□□ -0.43
SYNE1-215	ENST00000460912	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.34	□□□□□ -0.43
SYNE1-215	ENST00000460912	MYOM2	P54296	1465 aa		12.33	□□□□□ -0.44
SYNE1-215	ENST00000460912	TSPY4	P0CV99	314 aa		12.33	□□□□□ -0.44
SYNE1-215	ENST00000460912	TSPY10	P0CW01	314 aa		12.33	□□□□□ -0.44
SYNE1-215	ENST00000460912	PRKRIP1	Q9H875	184 aa	Predicted RBP	12.32	□□□□□ -0.44
SYNE1-215	ENST00000460912	RIMS1	Q86UR5	1692 aa	Known RBP	12.32	□□□□□ -0.44

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