RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KIAA1107Q9UPP5 1409 aa15.23■□□□□ 0.03
NPHP4-204ENST00000460696 CEBPAP49715 358 aaPredicted RBP15.23■□□□□ 0.03
NPHP4-204ENST00000460696 RGS3P49796 1198 aa15.23■□□□□ 0.03
NPHP4-204ENST00000460696 C9orf84Q5VXU9 1444 aa15.22■□□□□ 0.03
NPHP4-204ENST00000460696 EIF4G3O43432 1585 aaKnown RBP15.22■□□□□ 0.03
NPHP4-204ENST00000460696 THOC2Q8NI27 1593 aaKnown RBP15.22■□□□□ 0.03
NPHP4-204ENST00000460696 PPM1GO15355 546 aaPredicted RBP15.21■□□□□ 0.03
NPHP4-204ENST00000460696 FRAT1Q92837 279 aaPredicted RBP15.21■□□□□ 0.03
NPHP4-204ENST00000460696 HAP1P54257 671 aaPredicted RBP15.21■□□□□ 0.02
NPHP4-204ENST00000460696 ROCK1Q13464 1354 aa15.2■□□□□ 0.02
NPHP4-204ENST00000460696 CFAP53Q96M91 514 aa15.2■□□□□ 0.02
NPHP4-204ENST00000460696 CCDC146Q8IYE0 955 aa15.19■□□□□ 0.02
NPHP4-204ENST00000460696 NOP58Q9Y2X3 529 aaKnown RBP15.19■□□□□ 0.02
NPHP4-204ENST00000460696 SCAPERQ9BY12 1400 aa15.19■□□□□ 0.02
NPHP4-204ENST00000460696 CD109Q6YHK3 1445 aa15.18■□□□□ 0.02
NPHP4-204ENST00000460696 PLIN1O60240 522 aa15.18■□□□□ 0.02
NPHP4-204ENST00000460696 CTTNBP2Q8WZ74 1663 aa15.18■□□□□ 0.02
NPHP4-204ENST00000460696 MORC1Q86VD1 984 aa15.18■□□□□ 0.02
NPHP4-204ENST00000460696 CFAP43Q8NDM7 1665 aa15.17■□□□□ 0.02
NPHP4-204ENST00000460696 POGKQ9P215 609 aa15.17■□□□□ 0.02
NPHP4-204ENST00000460696 ARHGEF11O15085 1522 aa15.17■□□□□ 0.02
NPHP4-204ENST00000460696 UGGT2Q9NYU1 1516 aa15.17■□□□□ 0.02
NPHP4-204ENST00000460696 NCOA1Q15788 1441 aa15.16■□□□□ 0.02
NPHP4-204ENST00000460696 U2SURPO15042 1029 aaKnown RBP15.16■□□□□ 0.02
NPHP4-204ENST00000460696 TRAK1Q9UPV9 953 aa15.16■□□□□ 0.02
NPHP4-204ENST00000460696 LAS1LQ9Y4W2 734 aaKnown RBP15.16■□□□□ 0.02
NPHP4-204ENST00000460696 EXOC6Q8TAG9 804 aa15.15■□□□□ 0.02
NPHP4-204ENST00000460696 CAMSAP2Q08AD1 1489 aa15.15■□□□□ 0.02
NPHP4-204ENST00000460696 SOX12O15370 315 aa15.14■□□□□ 0.01
NPHP4-204ENST00000460696 UPF2Q9HAU5 1272 aaKnown RBP15.14■□□□□ 0.01
NPHP4-204ENST00000460696 SRPK2P78362 688 aaKnown RBP15.14■□□□□ 0.01
NPHP4-204ENST00000460696 AKNAQ7Z591 1439 aa15.14■□□□□ 0.01
NPHP4-204ENST00000460696 ARHGAP5Q13017 1502 aa15.14■□□□□ 0.01
NPHP4-204ENST00000460696 PDE3BQ13370 1112 aa15.12■□□□□ 0.01
NPHP4-204ENST00000460696 RPRD2Q5VT52 1461 aaKnown RBP15.12■□□□□ 0.01
NPHP4-204ENST00000460696 PNISRQ8TF01 805 aaKnown RBP15.11■□□□□ 0.01
NPHP4-204ENST00000460696 RRP1P56182 461 aaKnown RBP15.11■□□□□ 0.01
NPHP4-204ENST00000460696 GOLGA2Q08379 1002 aa15.11■□□□□ 0.01
NPHP4-204ENST00000460696 NUP153P49790 1475 aaKnown RBP15.1■□□□□ 0.01
NPHP4-204ENST00000460696 EID1Q9Y6B2 187 aa15.1■□□□□ 0.01
NPHP4-204ENST00000460696 CDCA7LQ96GN5 454 aa15.09■□□□□ 0.01
NPHP4-204ENST00000460696 ASXL2Q76L83 1435 aa15.08■□□□□ 0
NPHP4-204ENST00000460696 GPATCH8Q9UKJ3 1502 aaKnown RBP15.08■□□□□ 0
NPHP4-204ENST00000460696 MAPK8IP3Q9UPT6 1336 aa15.08■□□□□ 0
NPHP4-204ENST00000460696 EIF3AQ14152 1382 aaKnown RBP15.07■□□□□ 0
NPHP4-204ENST00000460696 FTSJ3Q8IY81 847 aaKnown RBP15.07■□□□□ 0
NPHP4-204ENST00000460696 U2AF1L5P0DN76 240 aaPredicted RBP15.07■□□□□ 0
NPHP4-204ENST00000460696 U2AF1Q01081 240 aaKnown RBP eCLIP15.07■□□□□ 0
NPHP4-204ENST00000460696 HSPA2P54652 639 aa15.06■□□□□ 0
NPHP4-204ENST00000460696 DDRGK1Q96HY6 314 aa15.06■□□□□ 0
NPHP4-204ENST00000460696 APAF1O14727 1248 aa15.06■□□□□ 0
NPHP4-204ENST00000460696 RRP7AQ9Y3A4 280 aaKnown RBP15.06■□□□□ 0
NPHP4-204ENST00000460696 TCERG1O14776 1098 aaKnown RBP15.05■□□□□ -0
NPHP4-204ENST00000460696 CFAP70Q5T0N1 1121 aa15.05■□□□□ -0
NPHP4-204ENST00000460696 BRD4O60885 1362 aaPredicted RBP15.05■□□□□ -0
NPHP4-204ENST00000460696 ADAMTS8Q9UP79 889 aa15.04■□□□□ -0
NPHP4-204ENST00000460696 CRBNQ96SW2 442 aa15.04■□□□□ -0
NPHP4-204ENST00000460696 HDGFP51858 240 aaKnown RBP15.03■□□□□ -0
NPHP4-204ENST00000460696 ABCA5Q8WWZ7 1642 aa15.03■□□□□ -0
NPHP4-204ENST00000460696 MAGI3Q5TCQ9 1506 aa15.03■□□□□ -0
NPHP4-204ENST00000460696 TCOF1Q13428 1488 aaKnown RBP15.02■□□□□ -0
NPHP4-204ENST00000460696 ADAMTS12P58397 1594 aa15.02■□□□□ -0
NPHP4-204ENST00000460696 RBM33Q96EV2 1170 aaKnown RBP15.02■□□□□ -0
NPHP4-204ENST00000460696 ARXQ96QS3 562 aa15.02■□□□□ -0
NPHP4-204ENST00000460696 RAPGEF6Q8TEU7 1601 aa15.01□□□□□ -0.01
NPHP4-204ENST00000460696 HSP90AA1P07900 732 aaKnown RBP15.01□□□□□ -0.01
NPHP4-204ENST00000460696 CLUAP1Q96AJ1 413 aa15.01□□□□□ -0.01
NPHP4-204ENST00000460696 TMEM132EQ6IEE7 984 aa15□□□□□ -0.01
NPHP4-204ENST00000460696 IPO9Q96P70 1041 aaKnown RBP15□□□□□ -0.01
NPHP4-204ENST00000460696 SAMD9Q5K651 1589 aa15□□□□□ -0.01
NPHP4-204ENST00000460696 CCDC141Q6ZP82 1450 aa14.99□□□□□ -0.01
NPHP4-204ENST00000460696 FANCIQ9NVI1 1328 aa14.99□□□□□ -0.01
NPHP4-204ENST00000460696 ATP10BO94823 1461 aa14.99□□□□□ -0.01
NPHP4-204ENST00000460696 FBXO31Q5XUX0 539 aaPredicted RBP14.99□□□□□ -0.01
NPHP4-204ENST00000460696 SLC26A8Q96RN1 970 aa14.99□□□□□ -0.01
NPHP4-204ENST00000460696 PAK3O75914 559 aaPredicted RBP14.98□□□□□ -0.01
NPHP4-204ENST00000460696 BCL2L13Q9BXK5 485 aa14.98□□□□□ -0.01
NPHP4-204ENST00000460696 PDE4AP27815 886 aa14.97□□□□□ -0.01
NPHP4-204ENST00000460696 DISP1Q96F81 1524 aa14.97□□□□□ -0.01
NPHP4-204ENST00000460696 DEKP35659 375 aaKnown RBP14.97□□□□□ -0.01
NPHP4-204ENST00000460696 KIAA0556O60303 1618 aa14.97□□□□□ -0.01
NPHP4-204ENST00000460696 NUP160Q12769 1436 aa14.97□□□□□ -0.01
NPHP4-204ENST00000460696 PIP4K2BP78356 416 aa14.97□□□□□ -0.01
NPHP4-204ENST00000460696 KIF14Q15058 1648 aa14.96□□□□□ -0.01
NPHP4-204ENST00000460696 PPP2R1AP30153 589 aa14.96□□□□□ -0.01
NPHP4-204ENST00000460696 TXNDC2Q86VQ3 553 aa14.95□□□□□ -0.02
NPHP4-204ENST00000460696 CENPJQ9HC77 1338 aaPredicted RBP14.94□□□□□ -0.02
NPHP4-204ENST00000460696 BECN1Q14457 450 aa14.94□□□□□ -0.02
NPHP4-204ENST00000460696 PLEKHH2Q8IVE3 1493 aa14.93□□□□□ -0.02
NPHP4-204ENST00000460696 SMG6Q86US8 1419 aaKnown RBP14.93□□□□□ -0.02
NPHP4-204ENST00000460696 TARBP1Q13395 1621 aaKnown RBP14.93□□□□□ -0.02
NPHP4-204ENST00000460696 HDGFL2Q7Z4V5 671 aaPredicted RBP14.93□□□□□ -0.02
NPHP4-204ENST00000460696 ERBINQ96RT1 1412 aa14.92□□□□□ -0.02
NPHP4-204ENST00000460696 VGFO15240 615 aaPredicted RBP14.92□□□□□ -0.02
NPHP4-204ENST00000460696 CEP170Q5SW79 1584 aa14.92□□□□□ -0.02
NPHP4-204ENST00000460696 MINK1Q8N4C8 1332 aaPredicted RBP14.92□□□□□ -0.02
NPHP4-204ENST00000460696 MYH16Q9H6N6 1097 aa14.92□□□□□ -0.02
NPHP4-204ENST00000460696 COG6Q9Y2V7 657 aa14.91□□□□□ -0.02
NPHP4-204ENST00000460696 ADGRL1O94910 1474 aa14.91□□□□□ -0.02
NPHP4-204ENST00000460696 STAC3Q96MF2 364 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms