RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 FAM43AQ8N2R8 423 aa15.28■□□□□ 0.04
CPSF3-202ENST00000460593 NBPF1Q3BBV0 1214 aa15.27■□□□□ 0.04
CPSF3-202ENST00000460593 ADAMTS8Q9UP79 889 aa15.27■□□□□ 0.03
CPSF3-202ENST00000460593 GAPVD1Q14C86 1478 aa15.27■□□□□ 0.03
CPSF3-202ENST00000460593 SEC24BO95487 1268 aa15.26■□□□□ 0.03
CPSF3-202ENST00000460593 CENPQQ7L2Z9 268 aaPredicted RBP15.26■□□□□ 0.03
CPSF3-202ENST00000460593 RSPH6AQ9H0K4 717 aa15.26■□□□□ 0.03
CPSF3-202ENST00000460593 CFDP1Q9UEE9 299 aaPredicted RBP15.26■□□□□ 0.03
CPSF3-202ENST00000460593 KIF14Q15058 1648 aa15.25■□□□□ 0.03
CPSF3-202ENST00000460593 PARD3Q8TEW0 1356 aa15.25■□□□□ 0.03
CPSF3-202ENST00000460593 PER1O15534 1290 aaPredicted RBP15.25■□□□□ 0.03
CPSF3-202ENST00000460593 PANK3Q9H999 370 aa15.24■□□□□ 0.03
CPSF3-202ENST00000460593 SPRYD3Q8NCJ5 442 aa15.24■□□□□ 0.03
CPSF3-202ENST00000460593 NUP155O75694 1391 aa15.23■□□□□ 0.03
CPSF3-202ENST00000460593 RALGAPBQ86X10 1494 aa15.23■□□□□ 0.03
CPSF3-202ENST00000460593 DNMT1P26358 1616 aaKnown RBP15.22■□□□□ 0.03
CPSF3-202ENST00000460593 PLEKHH1Q9ULM0 1364 aa15.22■□□□□ 0.03
CPSF3-202ENST00000460593 LAMC3Q9Y6N6 1575 aa15.21■□□□□ 0.03
CPSF3-202ENST00000460593 DUSP27Q5VZP5 1158 aa15.21■□□□□ 0.03
CPSF3-202ENST00000460593 CCDC146Q8IYE0 955 aa15.21■□□□□ 0.03
CPSF3-202ENST00000460593 GZF1Q9H116 711 aaPredicted RBP15.21■□□□□ 0.03
CPSF3-202ENST00000460593 URB2Q14146 1524 aaKnown RBP15.21■□□□□ 0.02
CPSF3-202ENST00000460593 BCAR3O75815 825 aa15.2■□□□□ 0.02
CPSF3-202ENST00000460593 USP19O94966 1318 aa15.19■□□□□ 0.02
CPSF3-202ENST00000460593 KIAA0586Q9BVV6 1533 aa15.19■□□□□ 0.02
CPSF3-202ENST00000460593 IGHDP01880 384 aa15.19■□□□□ 0.02
CPSF3-202ENST00000460593 PRG4Q92954 1404 aaPredicted RBP15.19■□□□□ 0.02
CPSF3-202ENST00000460593 SPINK5Q9NQ38 1064 aaPredicted RBP15.19■□□□□ 0.02
CPSF3-202ENST00000460593 DISP3Q9P2K9 1392 aa15.18■□□□□ 0.02
CPSF3-202ENST00000460593 WDR62O43379 1518 aa15.17■□□□□ 0.02
CPSF3-202ENST00000460593 PANK2Q9BZ23 570 aa15.17■□□□□ 0.02
CPSF3-202ENST00000460593 UHRF1BP1Q6BDS2 1440 aa15.17■□□□□ 0.02
CPSF3-202ENST00000460593 NAP1L5Q96NT1 182 aaPredicted RBP15.17■□□□□ 0.02
CPSF3-202ENST00000460593 PKNOX2Q96KN3 472 aa15.16■□□□□ 0.02
CPSF3-202ENST00000460593 BLMP54132 1417 aaPredicted RBP15.16■□□□□ 0.02
CPSF3-202ENST00000460593 CAMSAP2Q08AD1 1489 aa15.16■□□□□ 0.02
CPSF3-202ENST00000460593 PDS5BQ9NTI5 1447 aa15.15■□□□□ 0.02
CPSF3-202ENST00000460593 ANKRD50Q9ULJ7 1429 aa15.15■□□□□ 0.02
CPSF3-202ENST00000460593 WDR43Q15061 677 aaKnown RBP eCLIP15.14■□□□□ 0.01
CPSF3-202ENST00000460593 VSIG10Q8N0Z9 540 aa15.14■□□□□ 0.01
CPSF3-202ENST00000460593 GOLGA2Q08379 1002 aa15.13■□□□□ 0.01
CPSF3-202ENST00000460593 E9PCH4 1651 aa15.12■□□□□ 0.01
CPSF3-202ENST00000460593 DMRT2Q9Y5R5 561 aa15.12■□□□□ 0.01
CPSF3-202ENST00000460593 ZMYM4Q5VZL5 1548 aa15.12■□□□□ 0.01
CPSF3-202ENST00000460593 XRCC6P12956 609 aaKnown RBP eCLIP15.11■□□□□ 0.01
CPSF3-202ENST00000460593 ANKRD30AQ9BXX3 1397 aa15.11■□□□□ 0.01
CPSF3-202ENST00000460593 PANK1Q8TE04 598 aa15.11■□□□□ 0.01
CPSF3-202ENST00000460593 TESK2Q96S53 571 aa15.11■□□□□ 0.01
CPSF3-202ENST00000460593 NUP153P49790 1475 aaKnown RBP15.1■□□□□ 0.01
CPSF3-202ENST00000460593 COG6Q9Y2V7 657 aa15.1■□□□□ 0.01
CPSF3-202ENST00000460593 ZNF608Q9ULD9 1512 aaPredicted RBP15.1■□□□□ 0.01
CPSF3-202ENST00000460593 IQGAP2Q13576 1575 aa15.1■□□□□ 0.01
CPSF3-202ENST00000460593 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.1■□□□□ 0.011e-6■■□□□ 12.1
CPSF3-202ENST00000460593 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.09■□□□□ 0.01
CPSF3-202ENST00000460593 PPP2R1AP30153 589 aa15.09■□□□□ 0.01
CPSF3-202ENST00000460593 APAF1O14727 1248 aa15.08■□□□□ 0.01
CPSF3-202ENST00000460593 DNAJC5BQ9UF47 199 aa15.08■□□□□ 0
CPSF3-202ENST00000460593 KIF21AQ7Z4S6 1674 aa15.08■□□□□ 0
CPSF3-202ENST00000460593 HNRNPMP52272 730 aaKnown RBP eCLIP15.08■□□□□ 03e-8■■■■□ 24.4
CPSF3-202ENST00000460593 SLFN5Q08AF3 891 aa15.08■□□□□ 0
CPSF3-202ENST00000460593 ZMYND15Q9H091 742 aa15.07■□□□□ 0
CPSF3-202ENST00000460593 PNNQ9H307 717 aaKnown RBP15.06■□□□□ 0
CPSF3-202ENST00000460593 TNNQ9UQP3 1299 aa15.06■□□□□ 0
CPSF3-202ENST00000460593 BECN1Q14457 450 aa15.06■□□□□ 0
CPSF3-202ENST00000460593 ANTXR1Q9H6X2 564 aa15.06■□□□□ 0
CPSF3-202ENST00000460593 GPATCH8Q9UKJ3 1502 aaKnown RBP15.06■□□□□ 0
CPSF3-202ENST00000460593 TBC1D2Q9BYX2 928 aa15.06■□□□□ 0
CPSF3-202ENST00000460593 ZNF521Q96K83 1311 aa15.06■□□□□ 0
CPSF3-202ENST00000460593 CANXP27824 592 aaKnown RBP15.05■□□□□ -0
CPSF3-202ENST00000460593 L1TD1Q5T7N2 865 aaKnown RBP15.05■□□□□ -0
CPSF3-202ENST00000460593 PRAG1Q86YV5 1406 aa15.04■□□□□ -0
CPSF3-202ENST00000460593 GOLGA6L3A6NEY3 463 aa15.04■□□□□ -0
CPSF3-202ENST00000460593 KNSTRNQ9Y448 316 aa15.04■□□□□ -0
CPSF3-202ENST00000460593 ARHGEF12Q9NZN5 1544 aa15.03■□□□□ -0
CPSF3-202ENST00000460593 TMF1P82094 1093 aa15.03■□□□□ -0
CPSF3-202ENST00000460593 NEUROD2Q15784 382 aa15.03■□□□□ -0
CPSF3-202ENST00000460593 BCL2L13Q9BXK5 485 aa15.03■□□□□ -0
CPSF3-202ENST00000460593 ERBINQ96RT1 1412 aa15.02■□□□□ -0
CPSF3-202ENST00000460593 COL17A1Q9UMD9 1497 aaPredicted RBP15.02■□□□□ -0
CPSF3-202ENST00000460593 HSP90AA2PQ14568 343 aaPredicted RBP15.02□□□□□ -0.01
CPSF3-202ENST00000460593 TSPY4P0CV99 314 aa15.01□□□□□ -0.01
CPSF3-202ENST00000460593 TSPY10P0CW01 314 aa15.01□□□□□ -0.01
CPSF3-202ENST00000460593 TROQ12816 1431 aaPredicted RBP15□□□□□ -0.01
CPSF3-202ENST00000460593 C9orf84Q5VXU9 1444 aa15□□□□□ -0.01
CPSF3-202ENST00000460593 PLEKHH2Q8IVE3 1493 aa15□□□□□ -0.01
CPSF3-202ENST00000460593 CLUAP1Q96AJ1 413 aa15□□□□□ -0.01
CPSF3-202ENST00000460593 PLB1Q6P1J6 1458 aa15□□□□□ -0.01
CPSF3-202ENST00000460593 MAGI2Q86UL8 1455 aa15□□□□□ -0.01
CPSF3-202ENST00000460593 HSP90AA1P07900 732 aaKnown RBP14.99□□□□□ -0.01
CPSF3-202ENST00000460593 ADGRL2O95490 1459 aa14.99□□□□□ -0.01
CPSF3-202ENST00000460593 NLRP1Q9C000 1473 aa14.99□□□□□ -0.01
CPSF3-202ENST00000460593 EIF3AQ14152 1382 aaKnown RBP14.99□□□□□ -0.01
CPSF3-202ENST00000460593 KDM5DQ9BY66 1539 aa14.99□□□□□ -0.01
CPSF3-202ENST00000460593 MCM4P33991 863 aa14.99□□□□□ -0.01
CPSF3-202ENST00000460593 RRP7AQ9Y3A4 280 aaKnown RBP14.99□□□□□ -0.01
CPSF3-202ENST00000460593 CCDC144AA2RUR9 1427 aa14.99□□□□□ -0.01
CPSF3-202ENST00000460593 ADGBQ8N7X0 1667 aa14.98□□□□□ -0.01
CPSF3-202ENST00000460593 ERBB4Q15303 1308 aa14.98□□□□□ -0.01
CPSF3-202ENST00000460593 AMER1Q5JTC6 1135 aaPredicted RBP14.98□□□□□ -0.01
CPSF3-202ENST00000460593 PCDHB15Q9Y5E8 787 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms