RNA–Protein interactions for RNA: ENST00000460485.1

ERCC3-205, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 3

Gene ERCC3, Length 815 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-205ENST00000460485 KIAA1107Q9UPP5 1409 aa20.22■□□□□ 0.83
ERCC3-205ENST00000460485 CHIC2Q9UKJ5 165 aa20.22■□□□□ 0.83
ERCC3-205ENST00000460485 ARHGAP5Q13017 1502 aa20.2■□□□□ 0.82
ERCC3-205ENST00000460485 MBD5Q9P267 1494 aa20.19■□□□□ 0.82
ERCC3-205ENST00000460485 PPP1R15AO75807 674 aaPredicted RBP20.19■□□□□ 0.82
ERCC3-205ENST00000460485 EFCAB2Q5VUJ9 269 aa20.19■□□□□ 0.82
ERCC3-205ENST00000460485 ZNF644Q9H582 1327 aaPredicted RBP20.19■□□□□ 0.82
ERCC3-205ENST00000460485 LTBP4Q8N2S1 1624 aa20.19■□□□□ 0.82
ERCC3-205ENST00000460485 ANKRD50Q9ULJ7 1429 aa20.18■□□□□ 0.82
ERCC3-205ENST00000460485 TRIM52Q96A61 297 aa20.17■□□□□ 0.82
ERCC3-205ENST00000460485 SIN3AQ96ST3 1273 aa20.17■□□□□ 0.82
ERCC3-205ENST00000460485 RPRD2Q5VT52 1461 aaKnown RBP20.17■□□□□ 0.82
ERCC3-205ENST00000460485 MPHOSPH9Q99550 1183 aa20.16■□□□□ 0.82
ERCC3-205ENST00000460485 NEUROD1Q13562 356 aa20.15■□□□□ 0.82
ERCC3-205ENST00000460485 PZPP20742 1482 aa20.15■□□□□ 0.82
ERCC3-205ENST00000460485 TSPY4P0CV99 314 aa20.14■□□□□ 0.81
ERCC3-205ENST00000460485 TSPY10P0CW01 314 aa20.14■□□□□ 0.81
ERCC3-205ENST00000460485 SYCP2Q9BX26 1530 aa20.13■□□□□ 0.81
ERCC3-205ENST00000460485 ZNF518AQ6AHZ1 1483 aa20.13■□□□□ 0.81
ERCC3-205ENST00000460485 UNC13BO14795 1591 aa20.12■□□□□ 0.81
ERCC3-205ENST00000460485 TRAPPC8Q9Y2L5 1435 aa20.12■□□□□ 0.81
ERCC3-205ENST00000460485 ANKRD30BQ9BXX2 1392 aa20.12■□□□□ 0.81
ERCC3-205ENST00000460485 CENPBP07199 599 aaPredicted RBP20.12■□□□□ 0.81
ERCC3-205ENST00000460485 ZNF777Q9ULD5 760 aaPredicted RBP20.12■□□□□ 0.81
ERCC3-205ENST00000460485 ABCC1P33527 1531 aa20.11■□□□□ 0.81
ERCC3-205ENST00000460485 REREQ9P2R6 1566 aa20.1■□□□□ 0.81
ERCC3-205ENST00000460485 AFAP1Q8N556 730 aa20.09■□□□□ 0.81
ERCC3-205ENST00000460485 KIF15Q9NS87 1388 aa20.08■□□□□ 0.81
ERCC3-205ENST00000460485 KDM5CP41229 1560 aa20.08■□□□□ 0.81
ERCC3-205ENST00000460485 C3P01024 1663 aa20.08■□□□□ 0.81
ERCC3-205ENST00000460485 ESF1Q9H501 851 aaKnown RBP20.08■□□□□ 0.81
ERCC3-205ENST00000460485 DUOX2Q9NRD8 1548 aa20.07■□□□□ 0.8
ERCC3-205ENST00000460485 SLC4A1APQ9BWU0 796 aaKnown RBP20.05■□□□□ 0.8
ERCC3-205ENST00000460485 AGLP35573 1532 aa20.05■□□□□ 0.8
ERCC3-205ENST00000460485 MLH3Q9UHC1 1453 aa20.04■□□□□ 0.8
ERCC3-205ENST00000460485 ERBINQ96RT1 1412 aa20.03■□□□□ 0.8
ERCC3-205ENST00000460485 CNTLNQ9NXG0 1405 aa20.03■□□□□ 0.8
ERCC3-205ENST00000460485 IQGAP3Q86VI3 1631 aa20.03■□□□□ 0.8
ERCC3-205ENST00000460485 POLR1AO95602 1720 aaPredicted RBP20.03■□□□□ 0.8
ERCC3-205ENST00000460485 DIP2CQ9Y2E4 1556 aa20.03■□□□□ 0.8
ERCC3-205ENST00000460485 UBAP1LF5GYI3 381 aa20.02■□□□□ 0.8
ERCC3-205ENST00000460485 MYT1LQ9UL68 1186 aa20.02■□□□□ 0.8
ERCC3-205ENST00000460485 RTEL1-TNFRSF6BF6WH68 1400 aa20.02■□□□□ 0.79
ERCC3-205ENST00000460485 NPATQ14207 1427 aa20■□□□□ 0.79
ERCC3-205ENST00000460485 FAM135AQ9P2D6 1515 aa19.97■□□□□ 0.79
ERCC3-205ENST00000460485 CAMSAP1Q5T5Y3 1602 aa19.97■□□□□ 0.79
ERCC3-205ENST00000460485 HNRNPMP52272 730 aaKnown RBP eCLIP19.96■□□□□ 0.79
ERCC3-205ENST00000460485 PKD2Q13563 968 aa19.96■□□□□ 0.79
ERCC3-205ENST00000460485 MIER1Q8N108 512 aa19.96■□□□□ 0.79
ERCC3-205ENST00000460485 NUP155O75694 1391 aa19.95■□□□□ 0.79
ERCC3-205ENST00000460485 ZNF335Q9H4Z2 1342 aaPredicted RBP19.95■□□□□ 0.78
ERCC3-205ENST00000460485 INO80Q9ULG1 1556 aaPredicted RBP19.95■□□□□ 0.78
ERCC3-205ENST00000460485 ABCA6Q8N139 1617 aa19.94■□□□□ 0.78
ERCC3-205ENST00000460485 EIF2AK4Q9P2K8 1649 aaKnown RBP19.94■□□□□ 0.78
ERCC3-205ENST00000460485 NCKAP5LQ9HCH0 1330 aa19.93■□□□□ 0.78
ERCC3-205ENST00000460485 ZMYM3Q14202 1370 aa19.92■□□□□ 0.78
ERCC3-205ENST00000460485 PLA2R1Q13018 1463 aa19.92■□□□□ 0.78
ERCC3-205ENST00000460485 DEPDC5O75140 1603 aa19.91■□□□□ 0.78
ERCC3-205ENST00000460485 MROH2AA6NES4 1674 aa19.91■□□□□ 0.78
ERCC3-205ENST00000460485 ATP7AQ04656 1500 aa19.87■□□□□ 0.77
ERCC3-205ENST00000460485 L3MBTL2Q969R5 705 aa19.87■□□□□ 0.77
ERCC3-205ENST00000460485 KIDINS220Q9ULH0 1771 aa19.86■□□□□ 0.77
ERCC3-205ENST00000460485 EIF4G2P78344 907 aaKnown RBP eCLIP19.86■□□□□ 0.77
ERCC3-205ENST00000460485 TOM1O60784 492 aa19.84■□□□□ 0.77
ERCC3-205ENST00000460485 HSPA1LP34931 641 aa19.84■□□□□ 0.77
ERCC3-205ENST00000460485 MED1Q15648 1581 aaPredicted RBP19.83■□□□□ 0.77
ERCC3-205ENST00000460485 RALGAPBQ86X10 1494 aa19.83■□□□□ 0.76
ERCC3-205ENST00000460485 ZNF142P52746 1687 aaPredicted RBP19.83■□□□□ 0.76
ERCC3-205ENST00000460485 TET3O43151 1660 aa19.82■□□□□ 0.76
ERCC3-205ENST00000460485 PPP6R1Q9UPN7 881 aa19.82■□□□□ 0.76
ERCC3-205ENST00000460485 LAMC1P11047 1609 aa19.8■□□□□ 0.76
ERCC3-205ENST00000460485 FOXD1Q16676 465 aa19.8■□□□□ 0.76
ERCC3-205ENST00000460485 SPAG9O60271 1321 aaKnown RBP19.79■□□□□ 0.76
ERCC3-205ENST00000460485 CCDC144AA2RUR9 1427 aa19.79■□□□□ 0.76
ERCC3-205ENST00000460485 NEURL4Q96JN8 1562 aa19.78■□□□□ 0.76
ERCC3-205ENST00000460485 PRDM15P57071 1507 aaPredicted RBP19.78■□□□□ 0.76
ERCC3-205ENST00000460485 VWDEQ8N2E2 1590 aa19.78■□□□□ 0.76
ERCC3-205ENST00000460485 CEP170BQ9Y4F5 1589 aaPredicted RBP19.78■□□□□ 0.76
ERCC3-205ENST00000460485 CCER2I3L3R5 266 aa19.77■□□□□ 0.76
ERCC3-205ENST00000460485 SPATA31E1Q6ZUB1 1445 aa19.76■□□□□ 0.75
ERCC3-205ENST00000460485 MYO3AQ8NEV4 1616 aa19.76■□□□□ 0.75
ERCC3-205ENST00000460485 SPHKAPQ2M3C7 1700 aa19.76■□□□□ 0.75
ERCC3-205ENST00000460485 PIP4K2BP78356 416 aa19.76■□□□□ 0.75
ERCC3-205ENST00000460485 CPS1P31327 1500 aa19.76■□□□□ 0.75
ERCC3-205ENST00000460485 CEP152O94986 1710 aa19.75■□□□□ 0.75
ERCC3-205ENST00000460485 SCAF1Q9H7N4 1312 aaKnown RBP19.75■□□□□ 0.75
ERCC3-205ENST00000460485 RNF17Q9BXT8 1623 aaKnown RBP19.74■□□□□ 0.75
ERCC3-205ENST00000460485 TRPM2O94759 1503 aa19.74■□□□□ 0.75
ERCC3-205ENST00000460485 E9PCH4 1651 aa19.73■□□□□ 0.75
ERCC3-205ENST00000460485 HSPA5P11021 654 aaKnown RBP19.73■□□□□ 0.75
ERCC3-205ENST00000460485 PHF23Q9BUL5 403 aaPredicted RBP19.73■□□□□ 0.75
ERCC3-205ENST00000460485 KANK1Q14678 1352 aa19.72■□□□□ 0.75
ERCC3-205ENST00000460485 CLTCQ00610 1675 aaKnown RBP19.72■□□□□ 0.75
ERCC3-205ENST00000460485 ANP32CO43423 234 aa19.72■□□□□ 0.75
ERCC3-205ENST00000460485 DDX10Q13206 875 aaKnown RBP19.72■□□□□ 0.75
ERCC3-205ENST00000460485 TRPM1Q7Z4N2 1603 aa19.72■□□□□ 0.75
ERCC3-205ENST00000460485 A2ML1A8K2U0 1454 aa19.71■□□□□ 0.75
ERCC3-205ENST00000460485 A2MP01023 1474 aa19.68■□□□□ 0.74
ERCC3-205ENST00000460485 LMTK2Q8IWU2 1503 aa19.68■□□□□ 0.74
ERCC3-205ENST00000460485 GGT6Q6P531 493 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms