RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 SYCP2Q9BX26 1530 aa12.79□□□□□ -0.36
UFD1-205ENST00000459854 ARAP3Q8WWN8 1544 aa12.79□□□□□ -0.36
UFD1-205ENST00000459854 ABCC5O15440 1437 aa12.79□□□□□ -0.36
UFD1-205ENST00000459854 ZNF326Q5BKZ1 582 aaKnown RBP12.79□□□□□ -0.36
UFD1-205ENST00000459854 DDX10Q13206 875 aaKnown RBP12.78□□□□□ -0.36
UFD1-205ENST00000459854 GLI2P10070 1586 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 RAB3GAP2Q9H2M9 1393 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 PPP4R2Q9NY27 417 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 TTC37Q6PGP7 1564 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 HDGFP51858 240 aaKnown RBP12.77□□□□□ -0.37
UFD1-205ENST00000459854 TRAPPC8Q9Y2L5 1435 aa12.77□□□□□ -0.37
UFD1-205ENST00000459854 ABCA9Q8IUA7 1624 aa12.77□□□□□ -0.37
UFD1-205ENST00000459854 TCOF1Q13428 1488 aaKnown RBP12.77□□□□□ -0.37
UFD1-205ENST00000459854 PPP1R15AO75807 674 aaPredicted RBP12.76□□□□□ -0.37
UFD1-205ENST00000459854 PKD2Q13563 968 aa12.76□□□□□ -0.37
UFD1-205ENST00000459854 RTEL1-TNFRSF6BF6WH68 1400 aa12.76□□□□□ -0.37
UFD1-205ENST00000459854 PPP6R1Q9UPN7 881 aa12.76□□□□□ -0.37
UFD1-205ENST00000459854 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
UFD1-205ENST00000459854 TMC1Q8TDI8 760 aa12.75□□□□□ -0.37
UFD1-205ENST00000459854 TSPOAP1O95153 1857 aa12.75□□□□□ -0.37
UFD1-205ENST00000459854 DEKP35659 375 aaKnown RBP12.74□□□□□ -0.37
UFD1-205ENST00000459854 MPHOSPH9Q99550 1183 aa12.74□□□□□ -0.37
UFD1-205ENST00000459854 DIP2BQ9P265 1576 aa12.74□□□□□ -0.37
UFD1-205ENST00000459854 DHX29Q7Z478 1369 aaKnown RBP12.74□□□□□ -0.37
UFD1-205ENST00000459854 PREX2Q70Z35 1606 aa12.74□□□□□ -0.37
UFD1-205ENST00000459854 SHANK2Q9UPX8 1470 aa12.73□□□□□ -0.37
UFD1-205ENST00000459854 AEBP2Q6ZN18 517 aaPredicted RBP12.72□□□□□ -0.37
UFD1-205ENST00000459854 MAGI2Q86UL8 1455 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 MRS2Q9HD23 443 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 HFM1A2PYH4 1435 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 NCOA1Q15788 1441 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 A2MP01023 1474 aa12.71□□□□□ -0.37
UFD1-205ENST00000459854 PTMAP06454 111 aaKnown RBP12.7□□□□□ -0.38
UFD1-205ENST00000459854 SUPT16HQ9Y5B9 1047 aaKnown RBP12.7□□□□□ -0.38
UFD1-205ENST00000459854 ATP10AO60312 1499 aa12.7□□□□□ -0.38
UFD1-205ENST00000459854 KDM6BO15054 1643 aa12.7□□□□□ -0.38
UFD1-205ENST00000459854 ABCC1P33527 1531 aa12.69□□□□□ -0.38
UFD1-205ENST00000459854 ZFYVE16Q7Z3T8 1539 aa12.69□□□□□ -0.38
UFD1-205ENST00000459854 DUOX2Q9NRD8 1548 aa12.69□□□□□ -0.38
UFD1-205ENST00000459854 PTMSP20962 102 aa12.68□□□□□ -0.38
UFD1-205ENST00000459854 ARHGEF5Q12774 1597 aa12.68□□□□□ -0.38
UFD1-205ENST00000459854 ATP7AQ04656 1500 aa12.68□□□□□ -0.38
UFD1-205ENST00000459854 ERBINQ96RT1 1412 aa12.67□□□□□ -0.38
UFD1-205ENST00000459854 RGL3Q3MIN7 710 aa12.67□□□□□ -0.38
UFD1-205ENST00000459854 DNTTIP2Q5QJE6 756 aaKnown RBP12.67□□□□□ -0.38
UFD1-205ENST00000459854 SAMD9LQ8IVG5 1584 aa12.67□□□□□ -0.38
UFD1-205ENST00000459854 MLH3Q9UHC1 1453 aa12.66□□□□□ -0.38
UFD1-205ENST00000459854 DNMT1P26358 1616 aaKnown RBP12.66□□□□□ -0.38
UFD1-205ENST00000459854 MYH16Q9H6N6 1097 aa12.66□□□□□ -0.38
UFD1-205ENST00000459854 WDR43Q15061 677 aaKnown RBP eCLIP12.66□□□□□ -0.38
UFD1-205ENST00000459854 ARXQ96QS3 562 aa12.66□□□□□ -0.38
UFD1-205ENST00000459854 NAIPQ13075 1403 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 EID1Q9Y6B2 187 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 MBD5Q9P267 1494 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 CDC42BPAQ5VT25 1732 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 CHAF1AQ13111 956 aaPredicted RBP12.65□□□□□ -0.39
UFD1-205ENST00000459854 KDM2AQ9Y2K7 1162 aa12.65□□□□□ -0.39
UFD1-205ENST00000459854 LRRIQ1Q96JM4 1722 aa12.63□□□□□ -0.39
UFD1-205ENST00000459854 CCDC144AA2RUR9 1427 aa12.63□□□□□ -0.39
UFD1-205ENST00000459854 GOLGA6L6A8MZA4 724 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 FOXD1Q16676 465 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 RSPH6AQ9H0K4 717 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 ADGRL2O95490 1459 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 HECW2Q9P2P5 1572 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 MAP3K4Q9Y6R4 1608 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 CNTLNQ9NXG0 1405 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 MSNP26038 577 aaKnown RBP12.61□□□□□ -0.39
UFD1-205ENST00000459854 NRDCO43847 1150 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 SLC52A1Q9NWF4 448 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 YEATS2Q9ULM3 1422 aa12.6□□□□□ -0.39
UFD1-205ENST00000459854 RBM19Q9Y4C8 960 aaKnown RBP12.6□□□□□ -0.39
UFD1-205ENST00000459854 TIMELESSQ9UNS1 1208 aa12.6□□□□□ -0.39
UFD1-205ENST00000459854 EIF4G2P78344 907 aaKnown RBP eCLIP12.59□□□□□ -0.39
UFD1-205ENST00000459854 PTPRKQ15262 1439 aa12.59□□□□□ -0.39
UFD1-205ENST00000459854 CDC42BPBQ9Y5S2 1711 aa12.59□□□□□ -0.39
UFD1-205ENST00000459854 ARHGEF12Q9NZN5 1544 aa12.59□□□□□ -0.39
UFD1-205ENST00000459854 RTN4Q9NQC3 1192 aaKnown RBP12.59□□□□□ -0.39
UFD1-205ENST00000459854 USP35Q9P2H5 1018 aa12.58□□□□□ -0.4
UFD1-205ENST00000459854 CASC1Q6TDU7 716 aa12.57□□□□□ -0.4
UFD1-205ENST00000459854 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.57□□□□□ -0.4
UFD1-205ENST00000459854 THEMISQ8N1K5 641 aaPredicted RBP12.57□□□□□ -0.4
UFD1-205ENST00000459854 PNNQ9H307 717 aaKnown RBP12.57□□□□□ -0.4
UFD1-205ENST00000459854 CCER2I3L3R5 266 aa12.57□□□□□ -0.4
UFD1-205ENST00000459854 CFAP44Q96MT7 982 aa12.57□□□□□ -0.4
UFD1-205ENST00000459854 DCAF11Q8TEB1 546 aa12.56□□□□□ -0.4
UFD1-205ENST00000459854 SIN3AQ96ST3 1273 aa12.56□□□□□ -0.4
UFD1-205ENST00000459854 ZRSR1Q15695 479 aaKnown RBP12.56□□□□□ -0.4
UFD1-205ENST00000459854 CHMP4BQ9H444 224 aaKnown RBP12.56□□□□□ -0.4
UFD1-205ENST00000459854 VGFO15240 615 aaPredicted RBP12.55□□□□□ -0.4
UFD1-205ENST00000459854 IRX6P78412 446 aaPredicted RBP12.55□□□□□ -0.4
UFD1-205ENST00000459854 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
UFD1-205ENST00000459854 LAS1LQ9Y4W2 734 aaKnown RBP12.54□□□□□ -0.4
UFD1-205ENST00000459854 MAST1Q9Y2H9 1570 aa12.53□□□□□ -0.4
UFD1-205ENST00000459854 DHX57Q6P158 1386 aaKnown RBP12.53□□□□□ -0.4
UFD1-205ENST00000459854 ADGBQ8N7X0 1667 aa12.53□□□□□ -0.4
UFD1-205ENST00000459854 MS4A1P11836 297 aa12.52□□□□□ -0.4
UFD1-205ENST00000459854 C14orf37Q86TY3 774 aa12.52□□□□□ -0.4
UFD1-205ENST00000459854 SENP3Q9H4L4 574 aaPredicted RBP12.52□□□□□ -0.4
UFD1-205ENST00000459854 CEBPAP49715 358 aaPredicted RBP12.52□□□□□ -0.41
UFD1-205ENST00000459854 ZMYM3Q14202 1370 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms