RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 PAXIP1Q6ZW49 1069 aaPredicted RBP10.39□□□□□ -0.75
VPS41-209ENST00000457055 CFAP44Q96MT7 982 aa10.39□□□□□ -0.75
VPS41-209ENST00000457055 NBPF3Q9H094 633 aa10.39□□□□□ -0.75
VPS41-209ENST00000457055 PTPN5P54829 565 aa10.38□□□□□ -0.75
VPS41-209ENST00000457055 COL9A1P20849 921 aa10.37□□□□□ -0.75
VPS41-209ENST00000457055 EPAS1Q99814 870 aa10.37□□□□□ -0.75
VPS41-209ENST00000457055 PROX2Q3B8N5 592 aa10.36□□□□□ -0.75
VPS41-209ENST00000457055 WNT2BQ93097 391 aa10.36□□□□□ -0.75
VPS41-209ENST00000457055 THSD4Q6ZMP0 1018 aa10.35□□□□□ -0.75
VPS41-209ENST00000457055 DDX12PQ92771 950 aa10.35□□□□□ -0.75
VPS41-209ENST00000457055 RABGEF1Q9UJ41 708 aa10.34□□□□□ -0.75
VPS41-209ENST00000457055 C6orf132Q5T0Z8 1188 aa10.33□□□□□ -0.76
VPS41-209ENST00000457055 RBM33Q96EV2 1170 aaKnown RBP10.33□□□□□ -0.76
VPS41-209ENST00000457055 PDIA6Q15084 440 aa10.32□□□□□ -0.76
VPS41-209ENST00000457055 E2F4Q16254 413 aa10.31□□□□□ -0.76
VPS41-209ENST00000457055 NBR1Q14596 966 aa10.3□□□□□ -0.76
VPS41-209ENST00000457055 WDR70Q9NW82 654 aa10.3□□□□□ -0.76
VPS41-209ENST00000457055 SPDYE16A6NNV3 312 aaPredicted RBP10.28□□□□□ -0.76
VPS41-209ENST00000457055 ANKK1Q8NFD2 765 aa10.28□□□□□ -0.76
VPS41-209ENST00000457055 KIAA1468Q9P260 1216 aa10.28□□□□□ -0.76
VPS41-209ENST00000457055 MAP3K7O43318 606 aa10.27□□□□□ -0.77
VPS41-209ENST00000457055 EN1Q05925 392 aaPredicted RBP10.27□□□□□ -0.77
VPS41-209ENST00000457055 LAPTM4BQ86VI4 370 aa10.26□□□□□ -0.77
VPS41-209ENST00000457055 TRIM6-TRIM34B2RNG4 842 aa10.25□□□□□ -0.77
VPS41-209ENST00000457055 ONECUT3O60422 494 aaPredicted RBP10.25□□□□□ -0.77
VPS41-209ENST00000457055 TSR1Q2NL82 804 aaKnown RBP10.24□□□□□ -0.77
VPS41-209ENST00000457055 SEPT9Q9UHD8 586 aaPredicted RBP10.24□□□□□ -0.77
VPS41-209ENST00000457055 ARIH1Q9Y4X5 557 aaPredicted RBP10.23□□□□□ -0.77
VPS41-209ENST00000457055 BCAMP50895 628 aa10.22□□□□□ -0.77
VPS41-209ENST00000457055 ZFRQ96KR1 1074 aaKnown RBP10.22□□□□□ -0.77
VPS41-209ENST00000457055 GRXCR2A6NFK2 248 aa10.21□□□□□ -0.77
VPS41-209ENST00000457055 SOWAHBA6NEL2 793 aa10.2□□□□□ -0.78
VPS41-209ENST00000457055 FAM98CQ17RN3 349 aaKnown RBP10.19□□□□□ -0.78
VPS41-209ENST00000457055 IFFO2Q5TF58 517 aa10.18□□□□□ -0.78
VPS41-209ENST00000457055 PACS2Q86VP3 889 aa10.17□□□□□ -0.78
VPS41-209ENST00000457055 TSKSQ9UJT2 592 aa10.17□□□□□ -0.78
VPS41-209ENST00000457055 PRIM1P49642 420 aaKnown RBP10.16□□□□□ -0.78
VPS41-209ENST00000457055 CDCA7LQ96GN5 454 aa10.15□□□□□ -0.78
VPS41-209ENST00000457055 NYAP1Q6ZVC0 841 aa10.14□□□□□ -0.79
VPS41-209ENST00000457055 CERKQ8TCT0 537 aa10.14□□□□□ -0.79
VPS41-209ENST00000457055 LRCH3Q96II8 777 aa10.14□□□□□ -0.79
VPS41-209ENST00000457055 WBP1LQ9NX94 342 aa10.14□□□□□ -0.79
VPS41-209ENST00000457055 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.14□□□□□ -0.79
VPS41-209ENST00000457055 OSBPP22059 807 aa10.13□□□□□ -0.79
VPS41-209ENST00000457055 PRSS12P56730 875 aa10.13□□□□□ -0.79
VPS41-209ENST00000457055 TSHZ2Q9NRE2 1034 aa10.13□□□□□ -0.79
VPS41-209ENST00000457055 A0A0G2JS52 829 aa10.12□□□□□ -0.79
VPS41-209ENST00000457055 CDHR5Q9HBB8 845 aa10.12□□□□□ -0.79
VPS41-209ENST00000457055 HPS5Q9UPZ3 1129 aa10.11□□□□□ -0.79
VPS41-209ENST00000457055 SMAPO00193 183 aa10.1□□□□□ -0.79
VPS41-209ENST00000457055 ITGBL1O95965 494 aaPredicted RBP10.1□□□□□ -0.79
VPS41-209ENST00000457055 FAM198AQ9UFP1 575 aa10.1□□□□□ -0.79
VPS41-209ENST00000457055 TSR3Q9UJK0 312 aaKnown RBP10.1□□□□□ -0.79
VPS41-209ENST00000457055 NBPF26B4DH59 902 aa10.09□□□□□ -0.79
VPS41-209ENST00000457055 PNMA3Q9UL41 463 aa10.08□□□□□ -0.8
VPS41-209ENST00000457055 RGS20O76081 388 aa10.07□□□□□ -0.8
VPS41-209ENST00000457055 C3orf80F5H4A9 247 aa10.06□□□□□ -0.8
VPS41-209ENST00000457055 SAMD7Q7Z3H4 446 aa10.06□□□□□ -0.8
VPS41-209ENST00000457055 TATDN2Q93075 761 aa10.06□□□□□ -0.8
VPS41-209ENST00000457055 RBM27Q9P2N5 1060 aaKnown RBP10.06□□□□□ -0.8
VPS41-209ENST00000457055 KCNV2Q8TDN2 545 aa10.05□□□□□ -0.8
VPS41-209ENST00000457055 ARHGEF1Q92888 912 aaKnown RBP10.05□□□□□ -0.8
VPS41-209ENST00000457055 PPP4CP60510 307 aa10.04□□□□□ -0.8
VPS41-209ENST00000457055 KCNC4Q03721 635 aa10.04□□□□□ -0.8
VPS41-209ENST00000457055 NUDT18Q6ZVK8 323 aa10.03□□□□□ -0.8
VPS41-209ENST00000457055 MLLT3P42568 568 aaPredicted RBP10.01□□□□□ -0.81
VPS41-209ENST00000457055 PADI6Q6TGC4 694 aa10.01□□□□□ -0.81
VPS41-209ENST00000457055 NPDC1Q9NQX5 325 aaPredicted RBP10.01□□□□□ -0.81
VPS41-209ENST00000457055 RNF40O75150 1001 aa10□□□□□ -0.81
VPS41-209ENST00000457055 TTC13Q8NBP0 860 aa9.99□□□□□ -0.81
VPS41-209ENST00000457055 HDGFP51858 240 aaKnown RBP9.98□□□□□ -0.81
VPS41-209ENST00000457055 P3H3Q8IVL6 736 aa9.96□□□□□ -0.82
VPS41-209ENST00000457055 IRX2Q9BZI1 471 aaPredicted RBP9.96□□□□□ -0.82
VPS41-209ENST00000457055 TJAP1Q5JTD0 557 aa9.93□□□□□ -0.82
VPS41-209ENST00000457055 SWT1Q5T5J6 900 aaKnown RBP9.93□□□□□ -0.82
VPS41-209ENST00000457055 SLF2Q8IX21 1173 aa9.92□□□□□ -0.82
VPS41-209ENST00000457055 MTRQ99707 1265 aa9.92□□□□□ -0.82
VPS41-209ENST00000457055 PTGDRQ13258 359 aa9.91□□□□□ -0.82
VPS41-209ENST00000457055 NECTIN2Q92692 538 aa9.91□□□□□ -0.82
VPS41-209ENST00000457055 IL21Q9HBE4 155 aa9.91□□□□□ -0.82
VPS41-209ENST00000457055 DAXXQ9UER7 740 aaPredicted RBP9.91□□□□□ -0.82
VPS41-209ENST00000457055 APLP1P51693 650 aa9.9□□□□□ -0.82
VPS41-209ENST00000457055 EYA1Q99502 592 aa9.9□□□□□ -0.82
VPS41-209ENST00000457055 NUTM2FA1L443 756 aa9.89□□□□□ -0.83
VPS41-209ENST00000457055 SLC4A3P48751 1232 aa9.89□□□□□ -0.83
VPS41-209ENST00000457055 MYT1Q01538 1121 aa9.89□□□□□ -0.83
VPS41-209ENST00000457055 PLCB2Q00722 1185 aa9.88□□□□□ -0.83
VPS41-209ENST00000457055 SEMA3EO15041 775 aa9.87□□□□□ -0.83
VPS41-209ENST00000457055 TTBK1Q5TCY1 1321 aaPredicted RBP9.86□□□□□ -0.83
VPS41-209ENST00000457055 DNAJB2P25686 324 aa9.85□□□□□ -0.83
VPS41-209ENST00000457055 RBM46Q8TBY0 533 aaKnown RBP9.85□□□□□ -0.83
VPS41-209ENST00000457055 ZNF516Q92618 1163 aa9.85□□□□□ -0.83
VPS41-209ENST00000457055 ADGRG1Q9Y653 693 aa9.84□□□□□ -0.83
VPS41-209ENST00000457055 FCHSD2O94868 740 aa9.83□□□□□ -0.84
VPS41-209ENST00000457055 COPS2P61201 443 aa9.83□□□□□ -0.84
VPS41-209ENST00000457055 FAM161AQ3B820 660 aa9.82□□□□□ -0.84
VPS41-209ENST00000457055 PPP1R18Q6NYC8 613 aa9.82□□□□□ -0.84
VPS41-209ENST00000457055 PRR14Q9BWN1 585 aa9.81□□□□□ -0.84
VPS41-209ENST00000457055 TMEM134Q9H6X4 195 aa9.81□□□□□ -0.84
VPS41-209ENST00000457055 RCCD1A6NED2 376 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms