RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 VPS9D1Q9Y2B5 631 aa10.12□□□□□ -0.79
USP40-209ENST00000452724 HRO43593 1189 aa10.1□□□□□ -0.79
USP40-209ENST00000452724 HAP1P54257 671 aaPredicted RBP10.1□□□□□ -0.79
USP40-209ENST00000452724 DDX12PQ92771 950 aa10.1□□□□□ -0.79
USP40-209ENST00000452724 PPP1R3GB7ZBB8 358 aa10.09□□□□□ -0.79
USP40-209ENST00000452724 ZBED2Q9BTP6 218 aa10.08□□□□□ -0.8
USP40-209ENST00000452724 NBR1Q14596 966 aa10.07□□□□□ -0.8
USP40-209ENST00000452724 NBPF3Q9H094 633 aa10.07□□□□□ -0.8
USP40-209ENST00000452724 C6orf132Q5T0Z8 1188 aa10.05□□□□□ -0.8
USP40-209ENST00000452724 RBM33Q96EV2 1170 aaKnown RBP10.05□□□□□ -0.8
USP40-209ENST00000452724 GOLGA8CPA6NN73 597 aa10.04□□□□□ -0.8
USP40-209ENST00000452724 MAP3K7O43318 606 aa10.04□□□□□ -0.8
USP40-209ENST00000452724 HCSTQ9UBK5 93 aa10.04□□□□□ -0.8
USP40-209ENST00000452724 MRPL50Q8N5N7 158 aaKnown RBP10.03□□□□□ -0.8
USP40-209ENST00000452724 ARHGEF1Q92888 912 aaKnown RBP10.03□□□□□ -0.8
USP40-209ENST00000452724 GRXCR2A6NFK2 248 aa10.02□□□□□ -0.81
USP40-209ENST00000452724 EN1Q05925 392 aaPredicted RBP10.02□□□□□ -0.81
USP40-209ENST00000452724 P3H3Q8IVL6 736 aa10.02□□□□□ -0.81
USP40-209ENST00000452724 KCTD12Q96CX2 325 aaKnown RBP10.02□□□□□ -0.81
USP40-209ENST00000452724 RABGEF1Q9UJ41 708 aa10.02□□□□□ -0.81
USP40-209ENST00000452724 BHMG1C9JSJ3 638 aaPredicted RBP10.01□□□□□ -0.81
USP40-209ENST00000452724 COL9A1P20849 921 aa10.01□□□□□ -0.81
USP40-209ENST00000452724 ONECUT3O60422 494 aaPredicted RBP9.99□□□□□ -0.81
USP40-209ENST00000452724 PROX2Q3B8N5 592 aa9.98□□□□□ -0.81
USP40-209ENST00000452724 CERKQ8TCT0 537 aa9.97□□□□□ -0.81
USP40-209ENST00000452724 KCNV2Q8TDN2 545 aa9.97□□□□□ -0.81
USP40-209ENST00000452724 WNT2BQ93097 391 aa9.96□□□□□ -0.82
USP40-209ENST00000452724 TRIM6-TRIM34B2RNG4 842 aa9.95□□□□□ -0.82
USP40-209ENST00000452724 TSR1Q2NL82 804 aaKnown RBP9.95□□□□□ -0.82
USP40-209ENST00000452724 LAPTM4BQ86VI4 370 aa9.95□□□□□ -0.82
USP40-209ENST00000452724 KIAA1468Q9P260 1216 aa9.95□□□□□ -0.82
USP40-209ENST00000452724 VSIG10Q8N0Z9 540 aa9.94□□□□□ -0.82
USP40-209ENST00000452724 OSBPP22059 807 aa9.93□□□□□ -0.82
USP40-209ENST00000452724 PACS2Q86VP3 889 aa9.93□□□□□ -0.82
USP40-209ENST00000452724 ANKK1Q8NFD2 765 aa9.93□□□□□ -0.82
USP40-209ENST00000452724 THSD4Q6ZMP0 1018 aa9.92□□□□□ -0.82
USP40-209ENST00000452724 PTPN5P54829 565 aa9.91□□□□□ -0.82
USP40-209ENST00000452724 PRSS12P56730 875 aa9.89□□□□□ -0.83
USP40-209ENST00000452724 CDCA7LQ96GN5 454 aa9.89□□□□□ -0.83
USP40-209ENST00000452724 KDM2AQ9Y2K7 1162 aa9.89□□□□□ -0.83
USP40-209ENST00000452724 FAM98CQ17RN3 349 aaKnown RBP9.88□□□□□ -0.83
USP40-209ENST00000452724 PRIM1P49642 420 aaKnown RBP9.87□□□□□ -0.83
USP40-209ENST00000452724 ZFRQ96KR1 1074 aaKnown RBP9.87□□□□□ -0.83
USP40-209ENST00000452724 PLA2G2EQ9NZK7 142 aa9.87□□□□□ -0.83
USP40-209ENST00000452724 SEPT9Q9UHD8 586 aaPredicted RBP9.87□□□□□ -0.83
USP40-209ENST00000452724 RBM27Q9P2N5 1060 aaKnown RBP9.86□□□□□ -0.83
USP40-209ENST00000452724 TSKSQ9UJT2 592 aa9.86□□□□□ -0.83
USP40-209ENST00000452724 NBPF26B4DH59 902 aa9.85□□□□□ -0.83
USP40-209ENST00000452724 MLLT3P42568 568 aaPredicted RBP9.85□□□□□ -0.83
USP40-209ENST00000452724 CDHR5Q9HBB8 845 aa9.85□□□□□ -0.83
USP40-209ENST00000452724 SOWAHBA6NEL2 793 aa9.84□□□□□ -0.83
USP40-209ENST00000452724 LRCH3Q96II8 777 aa9.83□□□□□ -0.84
USP40-209ENST00000452724 BCAMP50895 628 aa9.81□□□□□ -0.84
USP40-209ENST00000452724 SMYD5Q6GMV2 418 aa9.81□□□□□ -0.84
USP40-209ENST00000452724 NYAP1Q6ZVC0 841 aa9.81□□□□□ -0.84
USP40-209ENST00000452724 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.81□□□□□ -0.84
USP40-209ENST00000452724 PNMA3Q9UL41 463 aa9.81□□□□□ -0.84
USP40-209ENST00000452724 SEMA3EO15041 775 aa9.8□□□□□ -0.84
USP40-209ENST00000452724 HDGFP51858 240 aaKnown RBP9.8□□□□□ -0.84
USP40-209ENST00000452724 TATDN2Q93075 761 aa9.8□□□□□ -0.84
USP40-209ENST00000452724 PADI6Q6TGC4 694 aa9.78□□□□□ -0.84
USP40-209ENST00000452724 NPDC1Q9NQX5 325 aaPredicted RBP9.78□□□□□ -0.84
USP40-209ENST00000452724 NUTM2FA1L443 756 aa9.77□□□□□ -0.85
USP40-209ENST00000452724 SMAPO00193 183 aa9.77□□□□□ -0.85
USP40-209ENST00000452724 NUDT18Q6ZVK8 323 aa9.77□□□□□ -0.85
USP40-209ENST00000452724 FAM198AQ9UFP1 575 aa9.77□□□□□ -0.85
USP40-209ENST00000452724 TSR3Q9UJK0 312 aaKnown RBP9.77□□□□□ -0.85
USP40-209ENST00000452724 PTGDRQ13258 359 aa9.75□□□□□ -0.85
USP40-209ENST00000452724 TTC13Q8NBP0 860 aa9.75□□□□□ -0.85
USP40-209ENST00000452724 HPS5Q9UPZ3 1129 aa9.75□□□□□ -0.85
USP40-209ENST00000452724 TESPA1A2RU30 521 aaPredicted RBP9.74□□□□□ -0.85
USP40-209ENST00000452724 SLC4A3P48751 1232 aa9.74□□□□□ -0.85
USP40-209ENST00000452724 WBP1LQ9NX94 342 aa9.74□□□□□ -0.85
USP40-209ENST00000452724 FCHSD2O94868 740 aa9.73□□□□□ -0.85
USP40-209ENST00000452724 PPP4CP60510 307 aa9.73□□□□□ -0.85
USP40-209ENST00000452724 IFFO2Q5TF58 517 aa9.73□□□□□ -0.85
USP40-209ENST00000452724 SAMD7Q7Z3H4 446 aa9.73□□□□□ -0.85
USP40-209ENST00000452724 NECTIN2Q92692 538 aa9.73□□□□□ -0.85
USP40-209ENST00000452724 RNF40O75150 1001 aa9.7□□□□□ -0.86
USP40-209ENST00000452724 TULP1O00294 542 aaPredicted RBP9.69□□□□□ -0.86
USP40-209ENST00000452724 RBM46Q8TBY0 533 aaKnown RBP9.69□□□□□ -0.86
USP40-209ENST00000452724 C3orf80F5H4A9 247 aa9.68□□□□□ -0.86
USP40-209ENST00000452724 SLF2Q8IX21 1173 aa9.68□□□□□ -0.86
USP40-209ENST00000452724 ITGBL1O95965 494 aaPredicted RBP9.67□□□□□ -0.86
USP40-209ENST00000452724 EYA1Q99502 592 aa9.67□□□□□ -0.86
USP40-209ENST00000452724 HIC1Q14526 733 aa9.66□□□□□ -0.86
USP40-209ENST00000452724 SWT1Q5T5J6 900 aaKnown RBP9.65□□□□□ -0.86
USP40-209ENST00000452724 RBM26Q5T8P6 1007 aaKnown RBP9.65□□□□□ -0.86
USP40-209ENST00000452724 DNAJB2P25686 324 aa9.64□□□□□ -0.87
USP40-209ENST00000452724 KCNC4Q03721 635 aa9.64□□□□□ -0.87
USP40-209ENST00000452724 ADGRG1Q9Y653 693 aa9.64□□□□□ -0.87
USP40-209ENST00000452724 A0A0G2JS52 829 aa9.62□□□□□ -0.87
USP40-209ENST00000452724 OATP04181 439 aa9.62□□□□□ -0.87
USP40-209ENST00000452724 BCANQ96GW7 911 aa9.62□□□□□ -0.87
USP40-209ENST00000452724 PRR14Q9BWN1 585 aa9.62□□□□□ -0.87
USP40-209ENST00000452724 RGS20O76081 388 aa9.61□□□□□ -0.87
USP40-209ENST00000452724 GNPATO15228 680 aa9.6□□□□□ -0.87
USP40-209ENST00000452724 GPIHBP1Q8IV16 184 aa9.6□□□□□ -0.87
USP40-209ENST00000452724 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.59□□□□□ -0.87
USP40-209ENST00000452724 RCCD1A6NED2 376 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms