RNA–Protein interactions for RNA: ENST00000448940.5

CDC42BPA-209, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 1 (best)

Gene CDC42BPA, Length 7,355 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-209ENST00000448940 UHRF1BP1Q6BDS2 1440 aa7.5□□□□□ -1.21
CDC42BPA-209ENST00000448940 AMPHP49418 695 aa7.5□□□□□ -1.21
CDC42BPA-209ENST00000448940 NCBP3Q53F19 620 aaKnown RBP7.5□□□□□ -1.21
CDC42BPA-209ENST00000448940 WDR7Q9Y4E6 1490 aa7.5□□□□□ -1.21
CDC42BPA-209ENST00000448940 CCAR1Q8IX12 1150 aaKnown RBP7.5□□□□□ -1.21
CDC42BPA-209ENST00000448940 TRAK1Q9UPV9 953 aa7.49□□□□□ -1.21
CDC42BPA-209ENST00000448940 POLD1P28340 1107 aa7.49□□□□□ -1.21
CDC42BPA-209ENST00000448940 NEUROD2Q15784 382 aa7.49□□□□□ -1.21
CDC42BPA-209ENST00000448940 CAPN15O75808 1086 aa7.49□□□□□ -1.21
CDC42BPA-209ENST00000448940 WDHD1O75717 1129 aaPredicted RBP7.49□□□□□ -1.21
CDC42BPA-209ENST00000448940 TMF1P82094 1093 aa7.48□□□□□ -1.21
CDC42BPA-209ENST00000448940 ANP32CO43423 234 aa7.48□□□□□ -1.21
CDC42BPA-209ENST00000448940 WDR43Q15061 677 aaKnown RBP eCLIP7.48□□□□□ -1.21
CDC42BPA-209ENST00000448940 ABCC2Q92887 1545 aa7.48□□□□□ -1.21
CDC42BPA-209ENST00000448940 FBXW7Q969H0 707 aa7.48□□□□□ -1.21
CDC42BPA-209ENST00000448940 MSH6P52701 1360 aa7.48□□□□□ -1.21
CDC42BPA-209ENST00000448940 CCDC144AA2RUR9 1427 aa7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 CLEC11AQ9Y240 323 aa7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 PRDM11Q9NQV5 511 aa7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 NUP160Q12769 1436 aa7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 MINK1Q8N4C8 1332 aaPredicted RBP7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 EIF3AQ14152 1382 aaKnown RBP7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 TNRQ92752 1358 aa7.47□□□□□ -1.21
CDC42BPA-209ENST00000448940 MPHOSPH9Q99550 1183 aa7.46□□□□□ -1.21
CDC42BPA-209ENST00000448940 CASKIN1Q8WXD9 1431 aa7.46□□□□□ -1.22
CDC42BPA-209ENST00000448940 CUL7Q14999 1698 aa7.46□□□□□ -1.22
CDC42BPA-209ENST00000448940 BAG6P46379 1132 aa7.46□□□□□ -1.22
CDC42BPA-209ENST00000448940 DHX57Q6P158 1386 aaKnown RBP7.46□□□□□ -1.22
CDC42BPA-209ENST00000448940 EFCAB5A4FU69 1503 aa7.46□□□□□ -1.22
CDC42BPA-209ENST00000448940 TNNT2P45379 298 aaPredicted RBP7.45□□□□□ -1.22
CDC42BPA-209ENST00000448940 AIDAQ96BJ3 306 aa7.45□□□□□ -1.22
CDC42BPA-209ENST00000448940 RBM33Q96EV2 1170 aaKnown RBP7.45□□□□□ -1.22
CDC42BPA-209ENST00000448940 RXRBP28702 533 aa7.45□□□□□ -1.22
CDC42BPA-209ENST00000448940 MAPK8IP3Q9UPT6 1336 aa7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 ILDR1Q86SU0 546 aaPredicted RBP7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 FRAT2O75474 233 aaPredicted RBP7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 FAM135AQ9P2D6 1515 aa7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 FBXO31Q5XUX0 539 aaPredicted RBP7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 HIRIP3Q9BW71 556 aaPredicted RBP7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 NCKAP5LQ9HCH0 1330 aa7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 CNTLNQ9NXG0 1405 aa7.44□□□□□ -1.22
CDC42BPA-209ENST00000448940 U2SURPO15042 1029 aaKnown RBP7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 FBXO41Q8TF61 875 aa7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 STAC3Q96MF2 364 aa7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 NLRP2Q9NX02 1062 aa7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 ZNF772Q68DY9 489 aaPredicted RBP7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 RTF1Q92541 710 aaKnown RBP7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 ANKRD50Q9ULJ7 1429 aa7.43□□□□□ -1.22
CDC42BPA-209ENST00000448940 PRXQ9BXM0 1461 aa7.42□□□□□ -1.22
CDC42BPA-209ENST00000448940 PNNQ9H307 717 aaKnown RBP7.42□□□□□ -1.22
CDC42BPA-209ENST00000448940 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.42□□□□□ -1.22
CDC42BPA-209ENST00000448940 TOM1L2Q6ZVM7 507 aa7.42□□□□□ -1.22
CDC42BPA-209ENST00000448940 LAS1LQ9Y4W2 734 aaKnown RBP7.42□□□□□ -1.22
CDC42BPA-209ENST00000448940 ZNF526Q8TF50 670 aaPredicted RBP7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 CEP170Q5SW79 1584 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 EVC2Q86UK5 1308 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 MORC1Q86VD1 984 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 NLRP6P59044 892 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 RAPGEF4Q8WZA2 1011 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 ARAP1Q96P48 1450 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 EPRSP07814 1512 aaKnown RBP7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 TTLL12Q14166 644 aaPredicted RBP7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 COG3Q96JB2 828 aa7.41□□□□□ -1.22
CDC42BPA-209ENST00000448940 LRPPRCP42704 1394 aaKnown RBP7.4□□□□□ -1.22
CDC42BPA-209ENST00000448940 HECW1Q76N89 1606 aa7.4□□□□□ -1.22
CDC42BPA-209ENST00000448940 FYCO1Q9BQS8 1478 aa7.4□□□□□ -1.22
CDC42BPA-209ENST00000448940 CERKQ8TCT0 537 aa7.4□□□□□ -1.22
CDC42BPA-209ENST00000448940 TAF7LQ5H9L4 462 aa7.4□□□□□ -1.22
CDC42BPA-209ENST00000448940 NLRP13Q86W25 1043 aa7.4□□□□□ -1.23
CDC42BPA-209ENST00000448940 ABTB2Q8N961 1025 aa7.4□□□□□ -1.23
CDC42BPA-209ENST00000448940 ZNF518AQ6AHZ1 1483 aa7.4□□□□□ -1.23
CDC42BPA-209ENST00000448940 THOC2Q8NI27 1593 aaKnown RBP7.4□□□□□ -1.23
CDC42BPA-209ENST00000448940 AMOTL2Q9Y2J4 779 aa7.4□□□□□ -1.23
CDC42BPA-209ENST00000448940 CTDP1Q9Y5B0 961 aaPredicted RBP7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 C9orf84Q5VXU9 1444 aa7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 ADAMTS12P58397 1594 aa7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 PLCH2O75038 1416 aa7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 TRIM34Q9BYJ4 488 aa7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 DAXXQ9UER7 740 aaPredicted RBP7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 LRRC59Q96AG4 307 aaKnown RBP7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 ZNF316A6NFI3 1004 aaPredicted RBP7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 WWC3Q9ULE0 1092 aa7.39□□□□□ -1.23
CDC42BPA-209ENST00000448940 ROCK2O75116 1388 aaKnown RBP7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 NUTM2GQ5VZR2 741 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 IL27Q8NEV9 243 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 WDR97A6NE52 1622 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 FKBP8Q14318 412 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 PMFBP1Q8TBY8 1022 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 CHMP4AQ9BY43 222 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 SETD5Q9C0A6 1442 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 NCOA2Q15596 1464 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 C1orf141Q5JVX7 400 aa7.38□□□□□ -1.23
CDC42BPA-209ENST00000448940 ATP10BO94823 1461 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 ZMYM3Q14202 1370 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 DHX29Q7Z478 1369 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 XPCQ01831 940 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 C19orf44Q9H6X5 657 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 RPGRIP1LQ68CZ1 1315 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 ABCC10Q5T3U5 1492 aa7.37□□□□□ -1.23
CDC42BPA-209ENST00000448940 SENP3-EIF4A1A0A087X0R7 540 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms