RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 FBXW7Q969H0 707 aa11.36□□□□□ -0.59
USP49-205ENST00000448078 KCNK17Q96T54 332 aa11.36□□□□□ -0.59
USP49-205ENST00000448078 EPAS1Q99814 870 aa11.36□□□□□ -0.59
USP49-205ENST00000448078 POTEB3A0JP26 581 aa11.35□□□□□ -0.59
USP49-205ENST00000448078 MAP3K7O43318 606 aa11.35□□□□□ -0.59
USP49-205ENST00000448078 POTEBQ6S5H4 581 aa11.35□□□□□ -0.59
USP49-205ENST00000448078 PCDHGA10Q9Y5H3 936 aa11.35□□□□□ -0.59
USP49-205ENST00000448078 PTPREP23469 700 aa11.34□□□□□ -0.59
USP49-205ENST00000448078 SMYD5Q6GMV2 418 aa11.34□□□□□ -0.59
USP49-205ENST00000448078 AXIN2Q9Y2T1 843 aa11.34□□□□□ -0.59
USP49-205ENST00000448078 PBX2P40425 430 aa11.32□□□□□ -0.6
USP49-205ENST00000448078 PTGER2P43116 358 aa11.32□□□□□ -0.6
USP49-205ENST00000448078 ANKRD13DQ6ZTN6 518 aa11.32□□□□□ -0.6
USP49-205ENST00000448078 ATAD2BQ9ULI0 1458 aa11.32□□□□□ -0.6
USP49-205ENST00000448078 ARHGAP33O14559 1287 aa11.31□□□□□ -0.6
USP49-205ENST00000448078 MLLT3P42568 568 aaPredicted RBP11.31□□□□□ -0.6
USP49-205ENST00000448078 SMARCA2P51531 1590 aa11.3□□□□□ -0.6
USP49-205ENST00000448078 PDS5BQ9NTI5 1447 aa11.3□□□□□ -0.6
USP49-205ENST00000448078 ADAM33Q9BZ11 813 aa11.3□□□□□ -0.6
USP49-205ENST00000448078 PCDH10Q9P2E7 1040 aa11.3□□□□□ -0.6
USP49-205ENST00000448078 PSEN2P49810 448 aa11.29□□□□□ -0.6
USP49-205ENST00000448078 BCL2L12Q9HB09 334 aa11.29□□□□□ -0.6
USP49-205ENST00000448078 STAC3Q96MF2 364 aa11.28□□□□□ -0.6
USP49-205ENST00000448078 NESP48681 1621 aa11.27□□□□□ -0.6
USP49-205ENST00000448078 NUTM2FA1L443 756 aa11.26□□□□□ -0.61
USP49-205ENST00000448078 EN1Q05925 392 aaPredicted RBP11.26□□□□□ -0.61
USP49-205ENST00000448078 LSM11P83369 360 aaKnown RBP eCLIP11.24□□□□□ -0.61
USP49-205ENST00000448078 C6orf132Q5T0Z8 1188 aa11.24□□□□□ -0.61
USP49-205ENST00000448078 BAZ1BQ9UIG0 1483 aaKnown RBP11.24□□□□□ -0.61
USP49-205ENST00000448078 HMGXB3Q12766 1538 aa11.24□□□□□ -0.61
USP49-205ENST00000448078 OSBPP22059 807 aa11.23□□□□□ -0.61
USP49-205ENST00000448078 TSR1Q2NL82 804 aaKnown RBP11.23□□□□□ -0.61
USP49-205ENST00000448078 TESPA1A2RU30 521 aaPredicted RBP11.22□□□□□ -0.61
USP49-205ENST00000448078 PPP1R3GB7ZBB8 358 aa11.2□□□□□ -0.62
USP49-205ENST00000448078 DMRTA1Q5VZB9 504 aa11.2□□□□□ -0.62
USP49-205ENST00000448078 LAMC3Q9Y6N6 1575 aa11.2□□□□□ -0.62
USP49-205ENST00000448078 KRTAP3-3Q9BYR6 98 aa11.19□□□□□ -0.62
USP49-205ENST00000448078 KRTAP3-2Q9BYR7 98 aa11.19□□□□□ -0.62
USP49-205ENST00000448078 RBM26Q5T8P6 1007 aaKnown RBP11.18□□□□□ -0.62
USP49-205ENST00000448078 POTEEQ6S8J3 1075 aa11.18□□□□□ -0.62
USP49-205ENST00000448078 BCANQ96GW7 911 aa11.18□□□□□ -0.62
USP49-205ENST00000448078 COL9A1P20849 921 aa11.16□□□□□ -0.62
USP49-205ENST00000448078 ADGRD1Q6QNK2 874 aa11.16□□□□□ -0.62
USP49-205ENST00000448078 CDHR5Q9HBB8 845 aa11.16□□□□□ -0.62
USP49-205ENST00000448078 PRIM1P49642 420 aaKnown RBP11.15□□□□□ -0.62
USP49-205ENST00000448078 CERKQ8TCT0 537 aa11.15□□□□□ -0.62
USP49-205ENST00000448078 GOLGA8CPA6NN73 597 aa11.14□□□□□ -0.63
USP49-205ENST00000448078 GPIHBP1Q8IV16 184 aa11.14□□□□□ -0.63
USP49-205ENST00000448078 THOC2Q8NI27 1593 aaKnown RBP11.14□□□□□ -0.63
USP49-205ENST00000448078 CADPSQ9ULU8 1353 aa11.14□□□□□ -0.63
USP49-205ENST00000448078 PROX2Q3B8N5 592 aa11.13□□□□□ -0.63
USP49-205ENST00000448078 PLSCR2Q9NRY7 297 aa11.13□□□□□ -0.63
USP49-205ENST00000448078 SMARCA4P51532 1647 aa11.13□□□□□ -0.63
USP49-205ENST00000448078 BAZ1AQ9NRL2 1556 aaPredicted RBP11.12□□□□□ -0.63
USP49-205ENST00000448078 ZBED2Q9BTP6 218 aa11.12□□□□□ -0.63
USP49-205ENST00000448078 NBPF3Q9H094 633 aa11.12□□□□□ -0.63
USP49-205ENST00000448078 TK2O00142 265 aa11.11□□□□□ -0.63
USP49-205ENST00000448078 FCHSD2O94868 740 aa11.11□□□□□ -0.63
USP49-205ENST00000448078 PACS2Q86VP3 889 aa11.11□□□□□ -0.63
USP49-205ENST00000448078 VPS9D1Q9Y2B5 631 aa11.11□□□□□ -0.63
USP49-205ENST00000448078 MRPL50Q8N5N7 158 aaKnown RBP11.1□□□□□ -0.63
USP49-205ENST00000448078 MRC2Q9UBG0 1479 aa11.1□□□□□ -0.63
USP49-205ENST00000448078 CDCA7LQ96GN5 454 aa11.09□□□□□ -0.63
USP49-205ENST00000448078 TRIM6-TRIM34B2RNG4 842 aa11.08□□□□□ -0.64
USP49-205ENST00000448078 PRSS12P56730 875 aa11.08□□□□□ -0.64
USP49-205ENST00000448078 LMOD2Q6P5Q4 547 aa11.08□□□□□ -0.64
USP49-205ENST00000448078 KIAA1468Q9P260 1216 aa11.08□□□□□ -0.64
USP49-205ENST00000448078 PADI6Q6TGC4 694 aa11.06□□□□□ -0.64
USP49-205ENST00000448078 SPNS2Q8IVW8 549 aa11.06□□□□□ -0.64
USP49-205ENST00000448078 RABGEF1Q9UJ41 708 aa11.06□□□□□ -0.64
USP49-205ENST00000448078 MYT1LQ9UL68 1186 aa11.06□□□□□ -0.64
USP49-205ENST00000448078 NBPF26B4DH59 902 aa11.05□□□□□ -0.64
USP49-205ENST00000448078 PTGDRQ13258 359 aa11.05□□□□□ -0.64
USP49-205ENST00000448078 SLC4A5Q9BY07 1137 aa11.05□□□□□ -0.64
USP49-205ENST00000448078 SEPT9Q9UHD8 586 aaPredicted RBP11.04□□□□□ -0.64
USP49-205ENST00000448078 PNMA3Q9UL41 463 aa11.04□□□□□ -0.64
USP49-205ENST00000448078 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.03□□□□□ -0.64
USP49-205ENST00000448078 KIF21AQ7Z4S6 1674 aa11.02□□□□□ -0.64
USP49-205ENST00000448078 HIC1Q14526 733 aa11.02□□□□□ -0.65
USP49-205ENST00000448078 TSKSQ9UJT2 592 aa11.02□□□□□ -0.65
USP49-205ENST00000448078 PEG3Q9GZU2 1588 aa11.02□□□□□ -0.65
USP49-205ENST00000448078 CYB5RLQ6IPT4 315 aa11.01□□□□□ -0.65
USP49-205ENST00000448078 SMAPO00193 183 aa11□□□□□ -0.65
USP49-205ENST00000448078 GNPATO15228 680 aa11□□□□□ -0.65
USP49-205ENST00000448078 ONECUT3O60422 494 aaPredicted RBP11□□□□□ -0.65
USP49-205ENST00000448078 HDGFP51858 240 aaKnown RBP11□□□□□ -0.65
USP49-205ENST00000448078 RNF166Q96A37 237 aaPredicted RBP11□□□□□ -0.65
USP49-205ENST00000448078 KCTD12Q96CX2 325 aaKnown RBP11□□□□□ -0.65
USP49-205ENST00000448078 NPDC1Q9NQX5 325 aaPredicted RBP11□□□□□ -0.65
USP49-205ENST00000448078 RBM27Q9P2N5 1060 aaKnown RBP11□□□□□ -0.65
USP49-205ENST00000448078 CEP164Q9UPV0 1460 aa11□□□□□ -0.65
USP49-205ENST00000448078 WDR62O43379 1518 aa10.99□□□□□ -0.65
USP49-205ENST00000448078 NUDT18Q6ZVK8 323 aa10.99□□□□□ -0.65
USP49-205ENST00000448078 KRI1Q8N9T8 703 aaKnown RBP10.99□□□□□ -0.65
USP49-205ENST00000448078 HRO43593 1189 aa10.98□□□□□ -0.65
USP49-205ENST00000448078 TATDN2Q93075 761 aa10.98□□□□□ -0.65
USP49-205ENST00000448078 WNT2BQ93097 391 aa10.98□□□□□ -0.65
USP49-205ENST00000448078 RNF40O75150 1001 aa10.97□□□□□ -0.65
USP49-205ENST00000448078 ANKK1Q8NFD2 765 aa10.97□□□□□ -0.65
USP49-205ENST00000448078 RBM46Q8TBY0 533 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms