RNA–Protein interactions for RNA: ENST00000446155.1

HMGB1P48-201, Transcript of high mobility group box 1 pseudogene 48, humanhuman

BASIC

Gene HMGB1P48, Length 598 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P48-201ENST00000446155 C6orf132Q5T0Z8 1188 aa9.95□□□□□ -0.82
HMGB1P48-201ENST00000446155 HIC1Q14526 733 aa9.93□□□□□ -0.82
HMGB1P48-201ENST00000446155 FAM163AQ96GL9 167 aaPredicted RBP9.93□□□□□ -0.82
HMGB1P48-201ENST00000446155 GNPATO15228 680 aa9.92□□□□□ -0.82
HMGB1P48-201ENST00000446155 MARVELD3Q96A59 401 aa9.92□□□□□ -0.82
HMGB1P48-201ENST00000446155 EMP3P54852 163 aa9.91□□□□□ -0.82
HMGB1P48-201ENST00000446155 ERBB3P21860 1342 aa9.9□□□□□ -0.82
HMGB1P48-201ENST00000446155 POTEB3A0JP26 581 aa9.9□□□□□ -0.82
HMGB1P48-201ENST00000446155 FECHP22830 423 aa9.9□□□□□ -0.82
HMGB1P48-201ENST00000446155 POTEBQ6S5H4 581 aa9.9□□□□□ -0.82
HMGB1P48-201ENST00000446155 VARS2Q5ST30 1063 aaKnown RBP9.89□□□□□ -0.83
HMGB1P48-201ENST00000446155 POTEEQ6S8J3 1075 aa9.89□□□□□ -0.83
HMGB1P48-201ENST00000446155 CERKQ8TCT0 537 aa9.89□□□□□ -0.83
HMGB1P48-201ENST00000446155 SLC24A3Q9HC58 644 aa9.89□□□□□ -0.83
HMGB1P48-201ENST00000446155 COL9A1P20849 921 aa9.88□□□□□ -0.83
HMGB1P48-201ENST00000446155 TTC13Q8NBP0 860 aa9.88□□□□□ -0.83
HMGB1P48-201ENST00000446155 PPP1R3GB7ZBB8 358 aa9.87□□□□□ -0.83
HMGB1P48-201ENST00000446155 MAP2K5Q13163 448 aa9.87□□□□□ -0.83
HMGB1P48-201ENST00000446155 RBM27Q9P2N5 1060 aaKnown RBP9.87□□□□□ -0.83
HMGB1P48-201ENST00000446155 MINK1Q8N4C8 1332 aaPredicted RBP9.86□□□□□ -0.83
HMGB1P48-201ENST00000446155 PTPREP23469 700 aa9.86□□□□□ -0.83
HMGB1P48-201ENST00000446155 FAM205CA6NFA0 338 aa9.85□□□□□ -0.83
HMGB1P48-201ENST00000446155 IRF6O14896 467 aa9.84□□□□□ -0.83
HMGB1P48-201ENST00000446155 ZNF687Q8N1G0 1237 aa9.84□□□□□ -0.83
HMGB1P48-201ENST00000446155 HS3ST6Q96QI5 342 aa9.84□□□□□ -0.83
HMGB1P48-201ENST00000446155 PRSS12P56730 875 aa9.83□□□□□ -0.84
HMGB1P48-201ENST00000446155 PADI6Q6TGC4 694 aa9.83□□□□□ -0.84
HMGB1P48-201ENST00000446155 AK7Q96M32 723 aa9.83□□□□□ -0.84
HMGB1P48-201ENST00000446155 KCNK17Q96T54 332 aa9.83□□□□□ -0.84
HMGB1P48-201ENST00000446155 FAM198AQ9UFP1 575 aa9.83□□□□□ -0.84
HMGB1P48-201ENST00000446155 PBX2P40425 430 aa9.82□□□□□ -0.84
HMGB1P48-201ENST00000446155 CCDC102AQ96A19 550 aa9.82□□□□□ -0.84
HMGB1P48-201ENST00000446155 KRI1Q8N9T8 703 aaKnown RBP9.81□□□□□ -0.84
HMGB1P48-201ENST00000446155 CDCA7LQ96GN5 454 aa9.81□□□□□ -0.84
HMGB1P48-201ENST00000446155 ARHGAP33O14559 1287 aa9.8□□□□□ -0.84
HMGB1P48-201ENST00000446155 TRIM66O15016 1216 aa9.8□□□□□ -0.84
HMGB1P48-201ENST00000446155 PSEN2P49810 448 aa9.8□□□□□ -0.84
HMGB1P48-201ENST00000446155 ZBED2Q9BTP6 218 aa9.8□□□□□ -0.84
HMGB1P48-201ENST00000446155 SLC4A5Q9BY07 1137 aa9.79□□□□□ -0.84
HMGB1P48-201ENST00000446155 TSKSQ9UJT2 592 aa9.79□□□□□ -0.84
HMGB1P48-201ENST00000446155 ADGRG1Q9Y653 693 aa9.79□□□□□ -0.84
HMGB1P48-201ENST00000446155 DMRTA1Q5VZB9 504 aa9.78□□□□□ -0.84
HMGB1P48-201ENST00000446155 AXIN2Q9Y2T1 843 aa9.78□□□□□ -0.84
HMGB1P48-201ENST00000446155 TRIM6-TRIM34B2RNG4 842 aa9.77□□□□□ -0.85
HMGB1P48-201ENST00000446155 ONECUT3O60422 494 aaPredicted RBP9.77□□□□□ -0.85
HMGB1P48-201ENST00000446155 C3orf80F5H4A9 247 aa9.76□□□□□ -0.85
HMGB1P48-201ENST00000446155 BRPF1P55201 1214 aaPredicted RBP9.76□□□□□ -0.85
HMGB1P48-201ENST00000446155 AMHR2Q16671 573 aa9.76□□□□□ -0.85
HMGB1P48-201ENST00000446155 PROX2Q3B8N5 592 aa9.76□□□□□ -0.85
HMGB1P48-201ENST00000446155 KCNH8Q96L42 1107 aa9.75□□□□□ -0.85
HMGB1P48-201ENST00000446155 PHOX2BQ99453 314 aa9.75□□□□□ -0.85
HMGB1P48-201ENST00000446155 FAM161AQ3B820 660 aa9.74□□□□□ -0.85
HMGB1P48-201ENST00000446155 METTL3Q86U44 580 aaKnown RBP9.74□□□□□ -0.85
HMGB1P48-201ENST00000446155 PXYLP1Q8TE99 480 aa9.74□□□□□ -0.85
HMGB1P48-201ENST00000446155 PDE4DQ08499 809 aa9.73□□□□□ -0.85
HMGB1P48-201ENST00000446155 OATP04181 439 aa9.72□□□□□ -0.85
HMGB1P48-201ENST00000446155 EYA1Q99502 592 aa9.72□□□□□ -0.85
HMGB1P48-201ENST00000446155 TMUB1Q9BVT8 246 aa9.72□□□□□ -0.85
HMGB1P48-201ENST00000446155 VPS9D1Q9Y2B5 631 aa9.72□□□□□ -0.85
HMGB1P48-201ENST00000446155 TK2O00142 265 aa9.7□□□□□ -0.86
HMGB1P48-201ENST00000446155 LSM11P83369 360 aaKnown RBP eCLIP9.7□□□□□ -0.86
HMGB1P48-201ENST00000446155 TATDN2Q93075 761 aa9.7□□□□□ -0.86
HMGB1P48-201ENST00000446155 RABGEF1Q9UJ41 708 aa9.7□□□□□ -0.86
HMGB1P48-201ENST00000446155 NBPF26B4DH59 902 aa9.69□□□□□ -0.86
HMGB1P48-201ENST00000446155 PACS2Q86VP3 889 aa9.69□□□□□ -0.86
HMGB1P48-201ENST00000446155 PARP9Q8IXQ6 854 aa9.69□□□□□ -0.86
HMGB1P48-201ENST00000446155 KRTAP3-3Q9BYR6 98 aa9.69□□□□□ -0.86
HMGB1P48-201ENST00000446155 KRTAP3-2Q9BYR7 98 aa9.69□□□□□ -0.86
HMGB1P48-201ENST00000446155 KIAA1468Q9P260 1216 aa9.69□□□□□ -0.86
HMGB1P48-201ENST00000446155 NUDT18Q6ZVK8 323 aa9.68□□□□□ -0.86
HMGB1P48-201ENST00000446155 RBM46Q8TBY0 533 aaKnown RBP9.68□□□□□ -0.86
HMGB1P48-201ENST00000446155 BHMG1C9JSJ3 638 aaPredicted RBP9.67□□□□□ -0.86
HMGB1P48-201ENST00000446155 NEUROD2Q15784 382 aa9.67□□□□□ -0.86
HMGB1P48-201ENST00000446155 REPIN1Q9BWE0 567 aaKnown RBP9.67□□□□□ -0.86
HMGB1P48-201ENST00000446155 GPBP1L1Q9HC44 474 aaPredicted RBP9.67□□□□□ -0.86
HMGB1P48-201ENST00000446155 POTEGQ6S5H5 508 aa9.66□□□□□ -0.86
HMGB1P48-201ENST00000446155 PNMA3Q9UL41 463 aa9.66□□□□□ -0.86
HMGB1P48-201ENST00000446155 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.65□□□□□ -0.86
HMGB1P48-201ENST00000446155 RCCD1A6NED2 376 aa9.65□□□□□ -0.86
HMGB1P48-201ENST00000446155 SMAPO00193 183 aa9.65□□□□□ -0.86
HMGB1P48-201ENST00000446155 HRO43593 1189 aa9.65□□□□□ -0.86
HMGB1P48-201ENST00000446155 POTEMA6NI47 508 aa9.64□□□□□ -0.87
HMGB1P48-201ENST00000446155 ADGRD1Q6QNK2 874 aa9.64□□□□□ -0.87
HMGB1P48-201ENST00000446155 NLRP7Q8WX94 980 aa9.64□□□□□ -0.87
HMGB1P48-201ENST00000446155 KDM4CQ9H3R0 1056 aa9.64□□□□□ -0.87
HMGB1P48-201ENST00000446155 MDM2Q00987 491 aaPredicted RBP9.63□□□□□ -0.87
HMGB1P48-201ENST00000446155 DNAJB2P25686 324 aa9.62□□□□□ -0.87
HMGB1P48-201ENST00000446155 CLCN1P35523 988 aa9.62□□□□□ -0.87
HMGB1P48-201ENST00000446155 GIGYF2Q6Y7W6 1299 aaKnown RBP9.62□□□□□ -0.87
HMGB1P48-201ENST00000446155 TMEM134Q9H6X4 195 aa9.62□□□□□ -0.87
HMGB1P48-201ENST00000446155 GPCPD1Q9NPB8 672 aa9.62□□□□□ -0.87
HMGB1P48-201ENST00000446155 TTLL12Q14166 644 aaPredicted RBP9.61□□□□□ -0.87
HMGB1P48-201ENST00000446155 LAPTM4BQ86VI4 370 aa9.61□□□□□ -0.87
HMGB1P48-201ENST00000446155 SEPT9Q9UHD8 586 aaPredicted RBP9.61□□□□□ -0.87
HMGB1P48-201ENST00000446155 FAM98CQ17RN3 349 aaKnown RBP9.6□□□□□ -0.87
HMGB1P48-201ENST00000446155 NBPF3Q9H094 633 aa9.6□□□□□ -0.87
HMGB1P48-201ENST00000446155 FAM217BQ9NTX9 383 aaPredicted RBP9.6□□□□□ -0.87
HMGB1P48-201ENST00000446155 CDAN1Q8IWY9 1227 aa9.59□□□□□ -0.87
HMGB1P48-201ENST00000446155 MS4A1P11836 297 aa9.58□□□□□ -0.88
HMGB1P48-201ENST00000446155 DAXXQ9UER7 740 aaPredicted RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms