RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 URB2Q14146 1524 aaKnown RBP3.74□□□□□ -1.81
LIG4-203ENST00000442234 SLC26A8Q96RN1 970 aa3.73□□□□□ -1.81
LIG4-203ENST00000442234 XPCQ01831 940 aaPredicted RBP3.73□□□□□ -1.81
LIG4-203ENST00000442234 DHX37Q8IY37 1157 aaKnown RBP3.73□□□□□ -1.81
LIG4-203ENST00000442234 TIE1P35590 1138 aa3.73□□□□□ -1.81
LIG4-203ENST00000442234 SAFB2Q14151 953 aaKnown RBP eCLIP3.73□□□□□ -1.81
LIG4-203ENST00000442234 WIZO95785 1651 aa3.73□□□□□ -1.81
LIG4-203ENST00000442234 PSDA5PKW4 1024 aaPredicted RBP3.72□□□□□ -1.81
LIG4-203ENST00000442234 FAM50AQ14320 339 aaKnown RBP3.72□□□□□ -1.81
LIG4-203ENST00000442234 BBXQ8WY36 941 aaPredicted RBP3.72□□□□□ -1.81
LIG4-203ENST00000442234 LAS1LQ9Y4W2 734 aaKnown RBP3.72□□□□□ -1.81
LIG4-203ENST00000442234 CANXP27824 592 aaKnown RBP3.72□□□□□ -1.81
LIG4-203ENST00000442234 ZRANB1Q9UGI0 708 aa3.72□□□□□ -1.81
LIG4-203ENST00000442234 TOM1O60784 492 aa3.72□□□□□ -1.81
LIG4-203ENST00000442234 HNRNPMP52272 730 aaKnown RBP eCLIP3.72□□□□□ -1.81
LIG4-203ENST00000442234 C8orf37Q96NL8 207 aa3.72□□□□□ -1.81
LIG4-203ENST00000442234 NAP1L2Q9ULW6 460 aaPredicted RBP3.72□□□□□ -1.81
LIG4-203ENST00000442234 TSPOAP1O95153 1857 aa3.72□□□□□ -1.81
LIG4-203ENST00000442234 CCDC88BA6NC98 1476 aa3.72□□□□□ -1.81
LIG4-203ENST00000442234 RRP9O43818 475 aaKnown RBP3.71□□□□□ -1.81
LIG4-203ENST00000442234 NPM2Q86SE8 214 aaKnown RBP3.71□□□□□ -1.81
LIG4-203ENST00000442234 KIF3BO15066 747 aa3.71□□□□□ -1.82
LIG4-203ENST00000442234 IRX6P78412 446 aaPredicted RBP3.71□□□□□ -1.82
LIG4-203ENST00000442234 ASTLQ6HA08 431 aaPredicted RBP3.71□□□□□ -1.82
LIG4-203ENST00000442234 ZNF467Q7Z7K2 595 aaPredicted RBP3.71□□□□□ -1.82
LIG4-203ENST00000442234 CHMP4BQ9H444 224 aaKnown RBP3.71□□□□□ -1.82
LIG4-203ENST00000442234 IER5LQ5T953 404 aa3.71□□□□□ -1.82
LIG4-203ENST00000442234 NCLP19338 710 aaKnown RBP3.7□□□□□ -1.82
LIG4-203ENST00000442234 PROSER2Q86WR7 435 aaPredicted RBP3.7□□□□□ -1.82
LIG4-203ENST00000442234 GABBR2O75899 941 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 BRD2P25440 801 aaKnown RBP3.7□□□□□ -1.82
LIG4-203ENST00000442234 FGD5Q6ZNL6 1462 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 PBRM1Q86U86 1689 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 IFT140Q96RY7 1462 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 FAM182BQ5T319 152 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 NGLY1Q96IV0 654 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 PNNQ9H307 717 aaKnown RBP3.7□□□□□ -1.82
LIG4-203ENST00000442234 CDK11BP21127 795 aaKnown RBP3.7□□□□□ -1.82
LIG4-203ENST00000442234 FBXO31Q5XUX0 539 aaPredicted RBP3.7□□□□□ -1.82
LIG4-203ENST00000442234 HOMEZQ8IX15 550 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 CFAP44Q96MT7 982 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 CHMP4AQ9BY43 222 aa3.7□□□□□ -1.82
LIG4-203ENST00000442234 KDM6BO15054 1643 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 PPM1GO15355 546 aaPredicted RBP3.69□□□□□ -1.82
LIG4-203ENST00000442234 SF3B2Q13435 895 aaKnown RBP3.69□□□□□ -1.82
LIG4-203ENST00000442234 ZNF526Q8TF50 670 aaPredicted RBP3.69□□□□□ -1.82
LIG4-203ENST00000442234 POLR3GLQ9BT43 218 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 HAX1O00165 279 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 PKD2Q13563 968 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 TOPBP1Q92547 1522 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 EVX2Q03828 476 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 FAM43AQ8N2R8 423 aa3.69□□□□□ -1.82
LIG4-203ENST00000442234 DDX17Q92841 729 aaKnown RBP3.69□□□□□ -1.82
LIG4-203ENST00000442234 PLCB2Q00722 1185 aa3.68□□□□□ -1.82
LIG4-203ENST00000442234 IPO9Q96P70 1041 aaKnown RBP3.68□□□□□ -1.82
LIG4-203ENST00000442234 STK26Q9P289 416 aa3.68□□□□□ -1.82
LIG4-203ENST00000442234 POLA1P09884 1462 aaPredicted RBP3.68□□□□□ -1.82
LIG4-203ENST00000442234 C11orf95C9JLR9 678 aaPredicted RBP3.68□□□□□ -1.82
LIG4-203ENST00000442234 TNNT2P45379 298 aaPredicted RBP3.68□□□□□ -1.82
LIG4-203ENST00000442234 RGS3P49796 1198 aa3.68□□□□□ -1.82
LIG4-203ENST00000442234 ADGRL1O94910 1474 aa3.68□□□□□ -1.82
LIG4-203ENST00000442234 WRNQ14191 1432 aaPredicted RBP eCLIP3.68□□□□□ -1.82
LIG4-203ENST00000442234 CARMIL1Q5VZK9 1371 aa3.68□□□□□ -1.82
LIG4-203ENST00000442234 VGFO15240 615 aaPredicted RBP3.68□□□□□ -1.82
LIG4-203ENST00000442234 WASHC2CQ9Y4E1 1318 aa3.67□□□□□ -1.82
LIG4-203ENST00000442234 RIOK3O14730 519 aaKnown RBP3.67□□□□□ -1.82
LIG4-203ENST00000442234 DCAF8Q5TAQ9 597 aa3.67□□□□□ -1.82
LIG4-203ENST00000442234 CARMIL2Q6F5E8 1435 aa3.67□□□□□ -1.82
LIG4-203ENST00000442234 CD109Q6YHK3 1445 aa3.67□□□□□ -1.82
LIG4-203ENST00000442234 CFDP1Q9UEE9 299 aaPredicted RBP3.67□□□□□ -1.82
LIG4-203ENST00000442234 EIF4G3O43432 1585 aaKnown RBP3.66□□□□□ -1.82
LIG4-203ENST00000442234 GRIN2BQ13224 1484 aa3.66□□□□□ -1.82
LIG4-203ENST00000442234 ERCC6L2Q5T890 1561 aa3.66□□□□□ -1.82
LIG4-203ENST00000442234 ATMINO43313 823 aaPredicted RBP3.66□□□□□ -1.82
LIG4-203ENST00000442234 PDAP1Q13442 181 aaKnown RBP3.66□□□□□ -1.82
LIG4-203ENST00000442234 RGL3Q3MIN7 710 aa3.66□□□□□ -1.82
LIG4-203ENST00000442234 EFCAB2Q5VUJ9 269 aa3.66□□□□□ -1.82
LIG4-203ENST00000442234 TXNDC2Q86VQ3 553 aa3.66□□□□□ -1.82
LIG4-203ENST00000442234 ABCA5Q8WWZ7 1642 aa3.66□□□□□ -1.82
LIG4-203ENST00000442234 ABCC8Q09428 1581 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 SLC39A7Q92504 469 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 RRP7BPQ9NSQ0 103 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 ASXL2Q76L83 1435 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 TSPY4P0CV99 314 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 TSPY10P0CW01 314 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 NUTM2GQ5VZR2 741 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 HS6ST3Q8IZP7 471 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 PHF12Q96QT6 1004 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 PPP4R2Q9NY27 417 aa3.65□□□□□ -1.83
LIG4-203ENST00000442234 SENP3-EIF4A1A0A087X0R7 540 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 B4GALNT3Q6L9W6 998 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 KDM2AQ9Y2K7 1162 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 MAP3K13O43283 966 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 DEFB132Q7Z7B7 95 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 IPO4Q8TEX9 1081 aaKnown RBP3.64□□□□□ -1.83
LIG4-203ENST00000442234 C7P10643 843 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 ATF3P18847 181 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 ANP32BQ92688 251 aaKnown RBP3.64□□□□□ -1.83
LIG4-203ENST00000442234 MS4A3Q96HJ5 214 aa3.64□□□□□ -1.83
LIG4-203ENST00000442234 ARID3AQ99856 593 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms