RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 BCCIPQ9P287 314 aaKnown RBP eCLIP10.61□□□□□ -0.71
TMEM39A-202ENST00000438581 SCAPERQ9BY12 1400 aa10.61□□□□□ -0.71
TMEM39A-202ENST00000438581 MIA2Q96PC5 1412 aa10.6□□□□□ -0.71
TMEM39A-202ENST00000438581 USP47Q96K76 1375 aa10.6□□□□□ -0.71
TMEM39A-202ENST00000438581 HDGFL2Q7Z4V5 671 aaPredicted RBP10.6□□□□□ -0.71
TMEM39A-202ENST00000438581 C9orf84Q5VXU9 1444 aa10.59□□□□□ -0.71
TMEM39A-202ENST00000438581 ANP32AP39687 249 aaKnown RBP10.59□□□□□ -0.71
TMEM39A-202ENST00000438581 EID1Q9Y6B2 187 aa10.59□□□□□ -0.71
TMEM39A-202ENST00000438581 ARHGEF11O15085 1522 aa10.59□□□□□ -0.71
TMEM39A-202ENST00000438581 VGFO15240 615 aaPredicted RBP10.59□□□□□ -0.71
TMEM39A-202ENST00000438581 PANK3Q9H999 370 aa10.59□□□□□ -0.71
TMEM39A-202ENST00000438581 PAK3O75914 559 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-202ENST00000438581 FRAT1Q92837 279 aaPredicted RBP10.58□□□□□ -0.72
TMEM39A-202ENST00000438581 EIF3AQ14152 1382 aaKnown RBP10.57□□□□□ -0.72
TMEM39A-202ENST00000438581 HFM1A2PYH4 1435 aa10.57□□□□□ -0.72
TMEM39A-202ENST00000438581 RALBP1Q15311 655 aa10.57□□□□□ -0.72
TMEM39A-202ENST00000438581 U2AF1L5P0DN76 240 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-202ENST00000438581 U2AF1Q01081 240 aaKnown RBP eCLIP10.56□□□□□ -0.723e-12■■■■□ 20.9
TMEM39A-202ENST00000438581 DAPK1P53355 1430 aa10.56□□□□□ -0.72
TMEM39A-202ENST00000438581 SUPT6HQ7KZ85 1726 aaKnown RBP10.56□□□□□ -0.72
TMEM39A-202ENST00000438581 MINK1Q8N4C8 1332 aaPredicted RBP10.56□□□□□ -0.72
TMEM39A-202ENST00000438581 TMEM132EQ6IEE7 984 aa10.56□□□□□ -0.72
TMEM39A-202ENST00000438581 CNKSR2Q8WXI2 1034 aa10.56□□□□□ -0.72
TMEM39A-202ENST00000438581 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.55□□□□□ -0.72
TMEM39A-202ENST00000438581 NAIPQ13075 1403 aa10.55□□□□□ -0.72
TMEM39A-202ENST00000438581 NBPF8Q3BBV2 869 aa10.55□□□□□ -0.72
TMEM39A-202ENST00000438581 PRKRIP1Q9H875 184 aaPredicted RBP10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 KIF21AQ7Z4S6 1674 aa10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 NBPF1Q3BBV0 1214 aa10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 B4GALNT3Q6L9W6 998 aa10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 CFAP70Q5T0N1 1121 aa10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 NLRP13Q86W25 1043 aa10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 TERF2IPQ9NYB0 399 aa10.54□□□□□ -0.72
TMEM39A-202ENST00000438581 FTSJ3Q8IY81 847 aaKnown RBP10.52□□□□□ -0.72
TMEM39A-202ENST00000438581 CCDC146Q8IYE0 955 aa10.52□□□□□ -0.72
TMEM39A-202ENST00000438581 NGDNQ8NEJ9 315 aaKnown RBP10.52□□□□□ -0.73
TMEM39A-202ENST00000438581 KIF7Q2M1P5 1343 aa10.52□□□□□ -0.73
TMEM39A-202ENST00000438581 FGD1P98174 961 aa10.51□□□□□ -0.73
TMEM39A-202ENST00000438581 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 TMEM132AQ24JP5 1023 aa10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 ABCC5O15440 1437 aa10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 UPF2Q9HAU5 1272 aaKnown RBP10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 MYH16Q9H6N6 1097 aa10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 WASHC2AQ641Q2 1341 aa10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 KIAA1107Q9UPP5 1409 aa10.5□□□□□ -0.73
TMEM39A-202ENST00000438581 NCLP19338 710 aaKnown RBP10.49□□□□□ -0.73
TMEM39A-202ENST00000438581 THOC2Q8NI27 1593 aaKnown RBP10.49□□□□□ -0.73
TMEM39A-202ENST00000438581 PPP4R2Q9NY27 417 aa10.49□□□□□ -0.73
TMEM39A-202ENST00000438581 PLEKHH2Q8IVE3 1493 aa10.49□□□□□ -0.73
TMEM39A-202ENST00000438581 PLCB2Q00722 1185 aa10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 PNNQ9H307 717 aaKnown RBP10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 EVC2Q86UK5 1308 aa10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 CCDC7Q96M83 1385 aa10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 CAMSAP2Q08AD1 1489 aa10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 MAP3K1Q13233 1512 aa10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 CENPJQ9HC77 1338 aaPredicted RBP10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 NAP1L5Q96NT1 182 aaPredicted RBP10.48□□□□□ -0.73
TMEM39A-202ENST00000438581 CD109Q6YHK3 1445 aa10.47□□□□□ -0.73
TMEM39A-202ENST00000438581 PTPN23Q9H3S7 1636 aa10.47□□□□□ -0.73
TMEM39A-202ENST00000438581 RGS3P49796 1198 aa10.47□□□□□ -0.73
TMEM39A-202ENST00000438581 MYBBP1AQ9BQG0 1328 aaKnown RBP10.47□□□□□ -0.73
TMEM39A-202ENST00000438581 RRP7AQ9Y3A4 280 aaKnown RBP10.47□□□□□ -0.73
TMEM39A-202ENST00000438581 HSP90AA1P07900 732 aaKnown RBP10.46□□□□□ -0.73
TMEM39A-202ENST00000438581 LTV1Q96GA3 475 aaPredicted RBP10.46□□□□□ -0.74
TMEM39A-202ENST00000438581 ATP10BO94823 1461 aa10.46□□□□□ -0.74
TMEM39A-202ENST00000438581 CCDC141Q6ZP82 1450 aa10.45□□□□□ -0.74
TMEM39A-202ENST00000438581 ROCK1Q13464 1354 aa10.45□□□□□ -0.74
TMEM39A-202ENST00000438581 NCOA1Q15788 1441 aa10.45□□□□□ -0.74
TMEM39A-202ENST00000438581 RCAN3Q9UKA8 241 aa10.45□□□□□ -0.74
TMEM39A-202ENST00000438581 CHMP4AQ9BY43 222 aa10.44□□□□□ -0.74
TMEM39A-202ENST00000438581 CABP2Q9NPB3 220 aa10.44□□□□□ -0.74
TMEM39A-202ENST00000438581 NUP153P49790 1475 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-202ENST00000438581 RTF1Q92541 710 aaKnown RBP10.44□□□□□ -0.74
TMEM39A-202ENST00000438581 STAC3Q96MF2 364 aa10.43□□□□□ -0.74
TMEM39A-202ENST00000438581 PTPRKQ15262 1439 aa10.43□□□□□ -0.74
TMEM39A-202ENST00000438581 ADAMTS12P58397 1594 aa10.43□□□□□ -0.74
TMEM39A-202ENST00000438581 GPATCH8Q9UKJ3 1502 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-202ENST00000438581 EIF4G3O43432 1585 aaKnown RBP10.43□□□□□ -0.74
TMEM39A-202ENST00000438581 CGNL1Q0VF96 1302 aa10.43□□□□□ -0.74
TMEM39A-202ENST00000438581 KIF14Q15058 1648 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 CSB-PGBD3P0DP91 1061 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 AMPHP49418 695 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 ANO8Q9HCE9 1232 aaPredicted RBP10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 WDR97A6NE52 1622 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 GOLGA2Q08379 1002 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 ADGRL1O94910 1474 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 TXNDC2Q86VQ3 553 aa10.42□□□□□ -0.74
TMEM39A-202ENST00000438581 AKNAQ7Z591 1439 aa10.41□□□□□ -0.74
TMEM39A-202ENST00000438581 CCDC9Q9Y3X0 531 aaKnown RBP10.41□□□□□ -0.74
TMEM39A-202ENST00000438581 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.41□□□□□ -0.74
TMEM39A-202ENST00000438581 GGNBP2Q9H3C7 697 aa10.41□□□□□ -0.74
TMEM39A-202ENST00000438581 ANKRD30BQ9BXX2 1392 aa10.4□□□□□ -0.74
TMEM39A-202ENST00000438581 RAPGEF6Q8TEU7 1601 aa10.4□□□□□ -0.74
TMEM39A-202ENST00000438581 WDR62O43379 1518 aa10.4□□□□□ -0.74
TMEM39A-202ENST00000438581 VSIG10Q8N0Z9 540 aa10.4□□□□□ -0.74
TMEM39A-202ENST00000438581 APAF1O14727 1248 aa10.4□□□□□ -0.74
TMEM39A-202ENST00000438581 COG3Q96JB2 828 aa10.4□□□□□ -0.74
TMEM39A-202ENST00000438581 CLUAP1Q96AJ1 413 aa10.4□□□□□ -0.75
TMEM39A-202ENST00000438581 CTTNBP2Q8WZ74 1663 aa10.4□□□□□ -0.75
TMEM39A-202ENST00000438581 PTMSP20962 102 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms