RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 FAM135AQ9P2D6 1515 aa36.37■■■■□ 3.41
CPNE1-216ENST00000437340 RICTORQ6R327 1708 aa36.35■■■■□ 3.41
CPNE1-216ENST00000437340 KIDINS220Q9ULH0 1771 aa36.34■■■■□ 3.41
CPNE1-216ENST00000437340 HIRIP3Q9BW71 556 aaPredicted RBP36.33■■■■□ 3.41
CPNE1-216ENST00000437340 DDX10Q13206 875 aaKnown RBP36.32■■■■□ 3.4
CPNE1-216ENST00000437340 EIF4G2P78344 907 aaKnown RBP eCLIP36.29■■■■□ 3.4
CPNE1-216ENST00000437340 HECW2Q9P2P5 1572 aa36.28■■■■□ 3.4
CPNE1-216ENST00000437340 MAGI2Q86UL8 1455 aa36.27■■■■□ 3.4
CPNE1-216ENST00000437340 FRMPD1Q5SYB0 1578 aa36.26■■■■□ 3.4
CPNE1-216ENST00000437340 NBPF8Q3BBV2 869 aa36.26■■■■□ 3.4
CPNE1-216ENST00000437340 IQGAP3Q86VI3 1631 aa36.25■■■■□ 3.39
CPNE1-216ENST00000437340 HSPA5P11021 654 aaKnown RBP36.24■■■■□ 3.39
CPNE1-216ENST00000437340 RAPGEF3O95398 923 aa36.22■■■■□ 3.39
CPNE1-216ENST00000437340 MLH3Q9UHC1 1453 aa36.22■■■■□ 3.39
CPNE1-216ENST00000437340 YTHDC1Q96MU7 727 aaKnown RBP36.21■■■■□ 3.39
CPNE1-216ENST00000437340 MYT1LQ9UL68 1186 aa36.2■■■■□ 3.38
CPNE1-216ENST00000437340 ABCA6Q8N139 1617 aa36.17■■■■□ 3.38
CPNE1-216ENST00000437340 UHRF1BP1Q6BDS2 1440 aa36.15■■■■□ 3.38
CPNE1-216ENST00000437340 ZMYM4Q5VZL5 1548 aa36.12■■■■□ 3.37
CPNE1-216ENST00000437340 EIF2AK4Q9P2K8 1649 aaKnown RBP36.1■■■■□ 3.37
CPNE1-216ENST00000437340 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.1■■■■□ 3.379e-9■□□□□ 10.7
CPNE1-216ENST00000437340 SPATA31E1Q6ZUB1 1445 aa36.1■■■■□ 3.37
CPNE1-216ENST00000437340 DIP2CQ9Y2E4 1556 aa36.09■■■■□ 3.37
CPNE1-216ENST00000437340 ATP10AO60312 1499 aa36.08■■■■□ 3.37
CPNE1-216ENST00000437340 CCDC144AA2RUR9 1427 aa36.07■■■■□ 3.37
CPNE1-216ENST00000437340 DHX29Q7Z478 1369 aaKnown RBP36.07■■■■□ 3.37
CPNE1-216ENST00000437340 DEPDC5O75140 1603 aa36.06■■■■□ 3.36
CPNE1-216ENST00000437340 A2MP01023 1474 aa36.06■■■■□ 3.36
CPNE1-216ENST00000437340 SCAF1Q9H7N4 1312 aaKnown RBP36.05■■■■□ 3.36
CPNE1-216ENST00000437340 COL17A1Q9UMD9 1497 aaPredicted RBP36.05■■■■□ 3.36
CPNE1-216ENST00000437340 WASHC2AQ641Q2 1341 aa36.05■■■■□ 3.36
CPNE1-216ENST00000437340 PLA2R1Q13018 1463 aa36.04■■■■□ 3.36
CPNE1-216ENST00000437340 ANP32CO43423 234 aa36.02■■■■□ 3.36
CPNE1-216ENST00000437340 TRHP20396 242 aaPredicted RBP36.02■■■■□ 3.36
CPNE1-216ENST00000437340 YEATS2Q9ULM3 1422 aa36.01■■■■□ 3.36
CPNE1-216ENST00000437340 RALGAPBQ86X10 1494 aa36.01■■■■□ 3.35
CPNE1-216ENST00000437340 CCER2I3L3R5 266 aa35.97■■■■□ 3.35
CPNE1-216ENST00000437340 MROH1Q8NDA8 1641 aa35.96■■■■□ 3.35
CPNE1-216ENST00000437340 BCORL1Q5H9F3 1711 aa35.95■■■■□ 3.35
CPNE1-216ENST00000437340 RNF17Q9BXT8 1623 aaKnown RBP35.93■■■■□ 3.34
CPNE1-216ENST00000437340 CCDC7Q96M83 1385 aa35.93■■■■□ 3.34
CPNE1-216ENST00000437340 PRDM15P57071 1507 aaPredicted RBP35.92■■■■□ 3.34
CPNE1-216ENST00000437340 KIF3BO15066 747 aa35.92■■■■□ 3.34
CPNE1-216ENST00000437340 ZNF326Q5BKZ1 582 aaKnown RBP35.91■■■■□ 3.34
CPNE1-216ENST00000437340 DCAF11Q8TEB1 546 aa35.9■■■■□ 3.34
CPNE1-216ENST00000437340 POLR1AO95602 1720 aaPredicted RBP35.9■■■■□ 3.34
CPNE1-216ENST00000437340 USP47Q96K76 1375 aa35.89■■■■□ 3.34
CPNE1-216ENST00000437340 VWDEQ8N2E2 1590 aa35.89■■■■□ 3.34
CPNE1-216ENST00000437340 KANK1Q14678 1352 aa35.87■■■■□ 3.33
CPNE1-216ENST00000437340 CNTLNQ9NXG0 1405 aa35.86■■■■□ 3.33
CPNE1-216ENST00000437340 C11orf95C9JLR9 678 aaPredicted RBP35.85■■■■□ 3.33
CPNE1-216ENST00000437340 ARHGEF40Q8TER5 1519 aa35.84■■■■□ 3.33
CPNE1-216ENST00000437340 E9PCH4 1651 aa35.84■■■■□ 3.33
CPNE1-216ENST00000437340 TET3O43151 1660 aa35.84■■■■□ 3.33
CPNE1-216ENST00000437340 KDM2AQ9Y2K7 1162 aa35.82■■■■□ 3.33
CPNE1-216ENST00000437340 PRAG1Q86YV5 1406 aa35.82■■■■□ 3.32
CPNE1-216ENST00000437340 REREQ9P2R6 1566 aa35.81■■■■□ 3.32
CPNE1-216ENST00000437340 PTPRTO14522 1441 aa35.8■■■■□ 3.32
CPNE1-216ENST00000437340 CEP152O94986 1710 aa35.79■■■■□ 3.32
CPNE1-216ENST00000437340 TRPM2O94759 1503 aa35.79■■■■□ 3.32
CPNE1-216ENST00000437340 KIF7Q2M1P5 1343 aa35.79■■■■□ 3.32
CPNE1-216ENST00000437340 ARID4BQ4LE39 1312 aaPredicted RBP35.79■■■■□ 3.32
CPNE1-216ENST00000437340 CARD11Q9BXL7 1154 aa35.78■■■■□ 3.32
CPNE1-216ENST00000437340 SIGLEC1Q9BZZ2 1709 aa35.77■■■■□ 3.32
CPNE1-216ENST00000437340 GTF3C3Q9Y5Q9 886 aa35.76■■■■□ 3.31
CPNE1-216ENST00000437340 TRPM1Q7Z4N2 1603 aa35.73■■■■□ 3.31
CPNE1-216ENST00000437340 RGL3Q3MIN7 710 aa35.72■■■■□ 3.31
CPNE1-216ENST00000437340 SPHKAPQ2M3C7 1700 aa35.72■■■■□ 3.31
CPNE1-216ENST00000437340 ROCK2O75116 1388 aaKnown RBP35.71■■■■□ 3.31
CPNE1-216ENST00000437340 GPRASP1Q5JY77 1395 aa35.69■■■■□ 3.3
CPNE1-216ENST00000437340 LMTK2Q8IWU2 1503 aa35.69■■■■□ 3.3
CPNE1-216ENST00000437340 GGT6Q6P531 493 aa35.69■■■■□ 3.3
CPNE1-216ENST00000437340 AGLP35573 1532 aa35.68■■■■□ 3.3
CPNE1-216ENST00000437340 EFCAB6Q5THR3 1501 aa35.67■■■■□ 3.3
CPNE1-216ENST00000437340 LAMC1P11047 1609 aa35.65■■■■□ 3.3
CPNE1-216ENST00000437340 STAC3Q96MF2 364 aa35.65■■■■□ 3.3
CPNE1-216ENST00000437340 ABCC3O15438 1527 aa35.64■■■■□ 3.3
CPNE1-216ENST00000437340 NEURL4Q96JN8 1562 aa35.63■■■■□ 3.29
CPNE1-216ENST00000437340 ZC3H13Q5T200 1668 aaKnown RBP35.62■■■■□ 3.29
CPNE1-216ENST00000437340 CAMSAP1Q5T5Y3 1602 aa35.6■■■■□ 3.29
CPNE1-216ENST00000437340 CLTCL1P53675 1640 aa35.6■■■■□ 3.29
CPNE1-216ENST00000437340 ST20-MTHFSA0A0A6YYL1 179 aa35.56■■■■□ 3.28
CPNE1-216ENST00000437340 WASHC2CQ9Y4E1 1318 aa35.53■■■■□ 3.28
CPNE1-216ENST00000437340 PRKRIP1Q9H875 184 aaPredicted RBP35.52■■■■□ 3.28
CPNE1-216ENST00000437340 CFAP65Q6ZU64 1925 aaKnown RBP35.51■■■■□ 3.27
CPNE1-216ENST00000437340 NBPF1Q3BBV0 1214 aa35.5■■■■□ 3.27
CPNE1-216ENST00000437340 NPATQ14207 1427 aa35.48■■■■□ 3.27
CPNE1-216ENST00000437340 MADDQ8WXG6 1647 aa35.47■■■■□ 3.27
CPNE1-216ENST00000437340 CLTCQ00610 1675 aaKnown RBP35.45■■■■□ 3.27
CPNE1-216ENST00000437340 MLECQ14165 292 aa35.39■■■■□ 3.26
CPNE1-216ENST00000437340 ARHGAP31Q2M1Z3 1444 aa35.39■■■■□ 3.26
CPNE1-216ENST00000437340 UGGT1Q9NYU2 1555 aa35.38■■■■□ 3.25
CPNE1-216ENST00000437340 POLR3GLQ9BT43 218 aa35.37■■■■□ 3.25
CPNE1-216ENST00000437340 KIF1BO60333 1816 aa35.36■■■■□ 3.25
CPNE1-216ENST00000437340 PPP6R1Q9UPN7 881 aa35.36■■■■□ 3.25
CPNE1-216ENST00000437340 MYOM2P54296 1465 aa35.35■■■■□ 3.25
CPNE1-216ENST00000437340 PREX1Q8TCU6 1659 aa35.34■■■■□ 3.25
CPNE1-216ENST00000437340 KIAA1210Q9ULL0 1709 aa35.32■■■■□ 3.24
CPNE1-216ENST00000437340 SYNMO15061 1565 aa35.31■■■■□ 3.24
CPNE1-216ENST00000437340 TESK2Q96S53 571 aa35.3■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms