RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 IQGAP3Q86VI3 1631 aa18.66■□□□□ 0.58
COL6A3-207ENST00000433762 ERCC6L2Q5T890 1561 aa18.64■□□□□ 0.57
COL6A3-207ENST00000433762 ABCC2Q92887 1545 aa18.63■□□□□ 0.57
COL6A3-207ENST00000433762 ATP10AO60312 1499 aa18.63■□□□□ 0.57
COL6A3-207ENST00000433762 MAGI2Q86UL8 1455 aa18.63■□□□□ 0.57
COL6A3-207ENST00000433762 EIF2AK4Q9P2K8 1649 aaKnown RBP18.63■□□□□ 0.57
COL6A3-207ENST00000433762 FAM9BQ8IZU0 186 aa18.62■□□□□ 0.57
COL6A3-207ENST00000433762 TTC37Q6PGP7 1564 aa18.62■□□□□ 0.57
COL6A3-207ENST00000433762 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.61■□□□□ 0.57
COL6A3-207ENST00000433762 SYCP2Q9BX26 1530 aa18.61■□□□□ 0.57
COL6A3-207ENST00000433762 GPRASP1Q5JY77 1395 aa18.61■□□□□ 0.57
COL6A3-207ENST00000433762 DUOX2Q9NRD8 1548 aa18.6■□□□□ 0.57
COL6A3-207ENST00000433762 PRAG1Q86YV5 1406 aa18.59■□□□□ 0.57
COL6A3-207ENST00000433762 CARD11Q9BXL7 1154 aa18.59■□□□□ 0.57
COL6A3-207ENST00000433762 FANCIQ9NVI1 1328 aa18.59■□□□□ 0.57
COL6A3-207ENST00000433762 BRD4O60885 1362 aaPredicted RBP18.58■□□□□ 0.57
COL6A3-207ENST00000433762 ARHGAP5Q13017 1502 aa18.58■□□□□ 0.57
COL6A3-207ENST00000433762 RNF123Q5XPI4 1314 aa18.58■□□□□ 0.57
COL6A3-207ENST00000433762 CCDC144AA2RUR9 1427 aa18.57■□□□□ 0.56
COL6A3-207ENST00000433762 ERBINQ96RT1 1412 aa18.57■□□□□ 0.56
COL6A3-207ENST00000433762 HNRNPMP52272 730 aaKnown RBP eCLIP18.57■□□□□ 0.56
COL6A3-207ENST00000433762 RALBP1Q15311 655 aa18.57■□□□□ 0.56
COL6A3-207ENST00000433762 LRPPRCP42704 1394 aaKnown RBP18.57■□□□□ 0.56
COL6A3-207ENST00000433762 ZMYM4Q5VZL5 1548 aa18.56■□□□□ 0.56
COL6A3-207ENST00000433762 PRDM15P57071 1507 aaPredicted RBP18.56■□□□□ 0.56
COL6A3-207ENST00000433762 UHRF1BP1LA0JNW5 1464 aa18.55■□□□□ 0.56
COL6A3-207ENST00000433762 INSRP06213 1382 aa18.55■□□□□ 0.56
COL6A3-207ENST00000433762 NUDCQ9Y266 331 aa18.54■□□□□ 0.56
COL6A3-207ENST00000433762 ARAP3Q8WWN8 1544 aa18.54■□□□□ 0.56
COL6A3-207ENST00000433762 ZNF326Q5BKZ1 582 aaKnown RBP18.53■□□□□ 0.56
COL6A3-207ENST00000433762 PNISRQ8TF01 805 aaKnown RBP18.53■□□□□ 0.56
COL6A3-207ENST00000433762 RNF17Q9BXT8 1623 aaKnown RBP18.52■□□□□ 0.56
COL6A3-207ENST00000433762 PLA2R1Q13018 1463 aa18.52■□□□□ 0.56
COL6A3-207ENST00000433762 MYBBP1AQ9BQG0 1328 aaKnown RBP18.52■□□□□ 0.56
COL6A3-207ENST00000433762 WASHC2CQ9Y4E1 1318 aa18.52■□□□□ 0.56
COL6A3-207ENST00000433762 A2MP01023 1474 aa18.5■□□□□ 0.55
COL6A3-207ENST00000433762 COL17A1Q9UMD9 1497 aaPredicted RBP18.5■□□□□ 0.55
COL6A3-207ENST00000433762 DCAF11Q8TEB1 546 aa18.5■□□□□ 0.55
COL6A3-207ENST00000433762 ST20-MTHFSA0A0A6YYL1 179 aa18.49■□□□□ 0.55
COL6A3-207ENST00000433762 PLCH2O75038 1416 aa18.49■□□□□ 0.55
COL6A3-207ENST00000433762 ABCC1P33527 1531 aa18.48■□□□□ 0.55
COL6A3-207ENST00000433762 PARD3Q8TEW0 1356 aa18.48■□□□□ 0.55
COL6A3-207ENST00000433762 ZCCHC11Q5TAX3 1644 aaKnown RBP18.47■□□□□ 0.55
COL6A3-207ENST00000433762 TMC1Q8TDI8 760 aa18.47■□□□□ 0.55
COL6A3-207ENST00000433762 IRX6P78412 446 aaPredicted RBP18.46■□□□□ 0.55
COL6A3-207ENST00000433762 RTEL1-TNFRSF6BF6WH68 1400 aa18.44■□□□□ 0.54
COL6A3-207ENST00000433762 NEURL4Q96JN8 1562 aa18.44■□□□□ 0.54
COL6A3-207ENST00000433762 STAC3Q96MF2 364 aa18.44■□□□□ 0.54
COL6A3-207ENST00000433762 DEPDC5O75140 1603 aa18.42■□□□□ 0.54
COL6A3-207ENST00000433762 NLRP13Q86W25 1043 aa18.42■□□□□ 0.54
COL6A3-207ENST00000433762 KDM2AQ9Y2K7 1162 aa18.41■□□□□ 0.54
COL6A3-207ENST00000433762 CEP152O94986 1710 aa18.41■□□□□ 0.54
COL6A3-207ENST00000433762 PDE3BQ13370 1112 aa18.4■□□□□ 0.54
COL6A3-207ENST00000433762 SPHKAPQ2M3C7 1700 aa18.4■□□□□ 0.54
COL6A3-207ENST00000433762 POLR3GLQ9BT43 218 aa18.4■□□□□ 0.54
COL6A3-207ENST00000433762 IQGAP1P46940 1657 aa18.4■□□□□ 0.54
COL6A3-207ENST00000433762 TRPM2O94759 1503 aa18.39■□□□□ 0.54
COL6A3-207ENST00000433762 MADDQ8WXG6 1647 aa18.38■□□□□ 0.53
COL6A3-207ENST00000433762 EFCAB2Q5VUJ9 269 aa18.38■□□□□ 0.53
COL6A3-207ENST00000433762 KIAA1210Q9ULL0 1709 aa18.38■□□□□ 0.53
COL6A3-207ENST00000433762 PER1O15534 1290 aaPredicted RBP18.37■□□□□ 0.53
COL6A3-207ENST00000433762 TET3O43151 1660 aa18.36■□□□□ 0.53
COL6A3-207ENST00000433762 ZFYVE16Q7Z3T8 1539 aa18.36■□□□□ 0.53
COL6A3-207ENST00000433762 TESK2Q96S53 571 aa18.35■□□□□ 0.53
COL6A3-207ENST00000433762 B4GALNT3Q6L9W6 998 aa18.35■□□□□ 0.53
COL6A3-207ENST00000433762 WDR7Q9Y4E6 1490 aa18.35■□□□□ 0.53
COL6A3-207ENST00000433762 PTPRTO14522 1441 aa18.34■□□□□ 0.53
COL6A3-207ENST00000433762 BLMP54132 1417 aaPredicted RBP18.34■□□□□ 0.53
COL6A3-207ENST00000433762 SCAPERQ9BY12 1400 aa18.34■□□□□ 0.53
COL6A3-207ENST00000433762 VWDEQ8N2E2 1590 aa18.34■□□□□ 0.53
COL6A3-207ENST00000433762 ABCA9Q8IUA7 1624 aa18.32■□□□□ 0.52
COL6A3-207ENST00000433762 INO80Q9ULG1 1556 aaPredicted RBP18.32■□□□□ 0.52
COL6A3-207ENST00000433762 SYNMO15061 1565 aa18.31■□□□□ 0.52
COL6A3-207ENST00000433762 MSH5O43196 834 aa18.31■□□□□ 0.52
COL6A3-207ENST00000433762 TMF1P82094 1093 aa18.31■□□□□ 0.52
COL6A3-207ENST00000433762 RIMBP3CA6NJZ7 1639 aa18.31■□□□□ 0.52
COL6A3-207ENST00000433762 RIMBP3BA6NNM3 1639 aa18.31■□□□□ 0.52
COL6A3-207ENST00000433762 RIMBP3Q9UFD9 1639 aa18.31■□□□□ 0.52
COL6A3-207ENST00000433762 NBPF1Q3BBV0 1214 aa18.3■□□□□ 0.52
COL6A3-207ENST00000433762 DISP3Q9P2K9 1392 aa18.3■□□□□ 0.52
COL6A3-207ENST00000433762 TRAPPC8Q9Y2L5 1435 aa18.3■□□□□ 0.52
COL6A3-207ENST00000433762 CCDC136Q96JN2 1154 aa18.27■□□□□ 0.52
COL6A3-207ENST00000433762 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.27■□□□□ 0.52
COL6A3-207ENST00000433762 CLTCL1P53675 1640 aa18.26■□□□□ 0.51
COL6A3-207ENST00000433762 RGL3Q3MIN7 710 aa18.26■□□□□ 0.51
COL6A3-207ENST00000433762 MYT1LQ9UL68 1186 aa18.26■□□□□ 0.51
COL6A3-207ENST00000433762 SCAF11Q99590 1463 aaKnown RBP18.26■□□□□ 0.51
COL6A3-207ENST00000433762 ATP7AQ04656 1500 aa18.26■□□□□ 0.51
COL6A3-207ENST00000433762 CYB5RLQ6IPT4 315 aa18.26■□□□□ 0.51
COL6A3-207ENST00000433762 CDCA8Q53HL2 280 aa18.25■□□□□ 0.51
COL6A3-207ENST00000433762 RRP1P56182 461 aaKnown RBP18.25■□□□□ 0.51
COL6A3-207ENST00000433762 SPAG9O60271 1321 aaKnown RBP18.25■□□□□ 0.51
COL6A3-207ENST00000433762 NPC1L1Q9UHC9 1359 aa18.24■□□□□ 0.51
COL6A3-207ENST00000433762 SLC24A1O60721 1099 aa18.24■□□□□ 0.51
COL6A3-207ENST00000433762 NPM1P06748 294 aaKnown RBP eCLIP18.24■□□□□ 0.51
COL6A3-207ENST00000433762 MYOM2P54296 1465 aa18.22■□□□□ 0.51
COL6A3-207ENST00000433762 RCAN3Q9UKA8 241 aa18.22■□□□□ 0.51
COL6A3-207ENST00000433762 ERICH6Q7L0X2 663 aa18.22■□□□□ 0.51
COL6A3-207ENST00000433762 KANK1Q14678 1352 aa18.21■□□□□ 0.51
COL6A3-207ENST00000433762 EIF3AQ14152 1382 aaKnown RBP18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms