RNA–Protein interactions for RNA: ENST00000433645.1

LINC01239-201, Transcript of long intergenic non-protein coding RNA 1239, humanhuman

TSL 3

Gene LINC01239, Length 325 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01239-201ENST00000433645 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.31□□□□□ -1.08
LINC01239-201ENST00000433645 MAP3K7O43318 606 aa8.3□□□□□ -1.08
LINC01239-201ENST00000433645 SLC4A5Q9BY07 1137 aa8.3□□□□□ -1.08
LINC01239-201ENST00000433645 PPP1R3GB7ZBB8 358 aa8.29□□□□□ -1.08
LINC01239-201ENST00000433645 PRIM1P49642 420 aaKnown RBP8.29□□□□□ -1.08
LINC01239-201ENST00000433645 ONECUT3O60422 494 aaPredicted RBP8.28□□□□□ -1.08
LINC01239-201ENST00000433645 POTEEQ6S8J3 1075 aa8.28□□□□□ -1.08
LINC01239-201ENST00000433645 CDAN1Q8IWY9 1227 aa8.28□□□□□ -1.08
LINC01239-201ENST00000433645 RBM27Q9P2N5 1060 aaKnown RBP8.28□□□□□ -1.08
LINC01239-201ENST00000433645 TK2O00142 265 aa8.27□□□□□ -1.09
LINC01239-201ENST00000433645 RBM33Q96EV2 1170 aaKnown RBP8.27□□□□□ -1.09
LINC01239-201ENST00000433645 RBM26Q5T8P6 1007 aaKnown RBP8.26□□□□□ -1.09
LINC01239-201ENST00000433645 LMOD2Q6P5Q4 547 aa8.26□□□□□ -1.09
LINC01239-201ENST00000433645 KCNK17Q96T54 332 aa8.26□□□□□ -1.09
LINC01239-201ENST00000433645 LSM11P83369 360 aaKnown RBP eCLIP8.25□□□□□ -1.09
LINC01239-201ENST00000433645 PTGDRQ13258 359 aa8.25□□□□□ -1.09
LINC01239-201ENST00000433645 TSR1Q2NL82 804 aaKnown RBP8.25□□□□□ -1.09
LINC01239-201ENST00000433645 KRTAP3-3Q9BYR6 98 aa8.25□□□□□ -1.09
LINC01239-201ENST00000433645 KRTAP3-2Q9BYR7 98 aa8.25□□□□□ -1.09
LINC01239-201ENST00000433645 NPDC1Q9NQX5 325 aaPredicted RBP8.25□□□□□ -1.09
LINC01239-201ENST00000433645 FCHSD2O94868 740 aa8.24□□□□□ -1.09
LINC01239-201ENST00000433645 ZBED2Q9BTP6 218 aa8.24□□□□□ -1.09
LINC01239-201ENST00000433645 NUTM2FA1L443 756 aa8.23□□□□□ -1.09
LINC01239-201ENST00000433645 COL9A1P20849 921 aa8.23□□□□□ -1.09
LINC01239-201ENST00000433645 PSEN2P49810 448 aa8.23□□□□□ -1.09
LINC01239-201ENST00000433645 HIC1Q14526 733 aa8.23□□□□□ -1.09
LINC01239-201ENST00000433645 GPIHBP1Q8IV16 184 aa8.23□□□□□ -1.09
LINC01239-201ENST00000433645 AXIN2Q9Y2T1 843 aa8.22□□□□□ -1.09
LINC01239-201ENST00000433645 GPR37O15354 613 aa8.21□□□□□ -1.1
LINC01239-201ENST00000433645 PRSS12P56730 875 aa8.21□□□□□ -1.1
LINC01239-201ENST00000433645 DMRTA1Q5VZB9 504 aa8.21□□□□□ -1.1
LINC01239-201ENST00000433645 TTC13Q8NBP0 860 aa8.21□□□□□ -1.1
LINC01239-201ENST00000433645 CDHR5Q9HBB8 845 aa8.21□□□□□ -1.1
LINC01239-201ENST00000433645 TRIM6-TRIM34B2RNG4 842 aa8.19□□□□□ -1.1
LINC01239-201ENST00000433645 GNPATO15228 680 aa8.19□□□□□ -1.1
LINC01239-201ENST00000433645 ADGRD1Q6QNK2 874 aa8.19□□□□□ -1.1
LINC01239-201ENST00000433645 CDCA7LQ96GN5 454 aa8.19□□□□□ -1.1
LINC01239-201ENST00000433645 RABGEF1Q9UJ41 708 aa8.19□□□□□ -1.1
LINC01239-201ENST00000433645 VPS9D1Q9Y2B5 631 aa8.19□□□□□ -1.1
LINC01239-201ENST00000433645 BHMG1C9JSJ3 638 aaPredicted RBP8.17□□□□□ -1.1
LINC01239-201ENST00000433645 HRO43593 1189 aa8.17□□□□□ -1.1
LINC01239-201ENST00000433645 PACS2Q86VP3 889 aa8.17□□□□□ -1.1
LINC01239-201ENST00000433645 ZC3H15Q8WU90 426 aaKnown RBP8.16□□□□□ -1.1
LINC01239-201ENST00000433645 ZMYND10O75800 440 aa8.15□□□□□ -1.1
LINC01239-201ENST00000433645 ANKRD13DQ6ZTN6 518 aa8.15□□□□□ -1.1
LINC01239-201ENST00000433645 NBPF3Q9H094 633 aa8.15□□□□□ -1.1
LINC01239-201ENST00000433645 TSKSQ9UJT2 592 aa8.15□□□□□ -1.1
LINC01239-201ENST00000433645 PROX2Q3B8N5 592 aa8.14□□□□□ -1.11
LINC01239-201ENST00000433645 PADI6Q6TGC4 694 aa8.14□□□□□ -1.11
LINC01239-201ENST00000433645 LAPTM4BQ86VI4 370 aa8.14□□□□□ -1.11
LINC01239-201ENST00000433645 NBPF26B4DH59 902 aa8.13□□□□□ -1.11
LINC01239-201ENST00000433645 BARGINQ6ZT62 677 aa8.13□□□□□ -1.11
LINC01239-201ENST00000433645 KIAA1468Q9P260 1216 aa8.13□□□□□ -1.11
LINC01239-201ENST00000433645 MINK1Q8N4C8 1332 aaPredicted RBP8.12□□□□□ -1.11
LINC01239-201ENST00000433645 MAP2K5Q13163 448 aa8.12□□□□□ -1.11
LINC01239-201ENST00000433645 FAM198AQ9UFP1 575 aa8.12□□□□□ -1.11
LINC01239-201ENST00000433645 OATP04181 439 aa8.11□□□□□ -1.11
LINC01239-201ENST00000433645 MRPL50Q8N5N7 158 aaKnown RBP8.1□□□□□ -1.11
LINC01239-201ENST00000433645 TATDN2Q93075 761 aa8.1□□□□□ -1.11
LINC01239-201ENST00000433645 STAC3Q96MF2 364 aa8.1□□□□□ -1.11
LINC01239-201ENST00000433645 ADGRG1Q9Y653 693 aa8.1□□□□□ -1.11
LINC01239-201ENST00000433645 IRF6O14896 467 aa8.09□□□□□ -1.11
LINC01239-201ENST00000433645 FAM98CQ17RN3 349 aaKnown RBP8.09□□□□□ -1.11
LINC01239-201ENST00000433645 RBM46Q8TBY0 533 aaKnown RBP8.09□□□□□ -1.11
LINC01239-201ENST00000433645 EYA1Q99502 592 aa8.09□□□□□ -1.11
LINC01239-201ENST00000433645 FECHP22830 423 aa8.08□□□□□ -1.12
LINC01239-201ENST00000433645 SPNS2Q8IVW8 549 aa8.08□□□□□ -1.12
LINC01239-201ENST00000433645 PNMA3Q9UL41 463 aa8.08□□□□□ -1.12
LINC01239-201ENST00000433645 NUDT18Q6ZVK8 323 aa8.07□□□□□ -1.12
LINC01239-201ENST00000433645 PXYLP1Q8TE99 480 aa8.07□□□□□ -1.12
LINC01239-201ENST00000433645 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.05□□□□□ -1.12
LINC01239-201ENST00000433645 METTL3Q86U44 580 aaKnown RBP8.05□□□□□ -1.12
LINC01239-201ENST00000433645 DNAJB2P25686 324 aa8.04□□□□□ -1.12
LINC01239-201ENST00000433645 KRI1Q8N9T8 703 aaKnown RBP8.04□□□□□ -1.12
LINC01239-201ENST00000433645 ZFRQ96KR1 1074 aaKnown RBP8.04□□□□□ -1.12
LINC01239-201ENST00000433645 MYT1LQ9UL68 1186 aa8.04□□□□□ -1.12
LINC01239-201ENST00000433645 C3orf80F5H4A9 247 aa8.03□□□□□ -1.12
LINC01239-201ENST00000433645 CCDC102AQ96A19 550 aa8.03□□□□□ -1.12
LINC01239-201ENST00000433645 AK7Q96M32 723 aa8.03□□□□□ -1.12
LINC01239-201ENST00000433645 SEPT9Q9UHD8 586 aaPredicted RBP8.03□□□□□ -1.12
LINC01239-201ENST00000433645 GOLGA8CPA6NN73 597 aa8.02□□□□□ -1.13
LINC01239-201ENST00000433645 HDGFP51858 240 aaKnown RBP8.02□□□□□ -1.13
LINC01239-201ENST00000433645 RCCD1A6NED2 376 aa8.01□□□□□ -1.13
LINC01239-201ENST00000433645 ANKK1Q8NFD2 765 aa8.01□□□□□ -1.13
LINC01239-201ENST00000433645 TMEM134Q9H6X4 195 aa8.01□□□□□ -1.13
LINC01239-201ENST00000433645 SMAPO00193 183 aa8□□□□□ -1.13
LINC01239-201ENST00000433645 NECTIN2Q92692 538 aa8□□□□□ -1.13
LINC01239-201ENST00000433645 SOWAHBA6NEL2 793 aa7.99□□□□□ -1.13
LINC01239-201ENST00000433645 SLC4A3P48751 1232 aa7.99□□□□□ -1.13
LINC01239-201ENST00000433645 AMHR2Q16671 573 aa7.99□□□□□ -1.13
LINC01239-201ENST00000433645 FAM161AQ3B820 660 aa7.99□□□□□ -1.13
LINC01239-201ENST00000433645 WNT2BQ93097 391 aa7.99□□□□□ -1.13
LINC01239-201ENST00000433645 MMRN1Q13201 1228 aa7.98□□□□□ -1.13
LINC01239-201ENST00000433645 TPRNQ4KMQ1 711 aa7.98□□□□□ -1.13
LINC01239-201ENST00000433645 SLF2Q8IX21 1173 aa7.98□□□□□ -1.13
LINC01239-201ENST00000433645 RNF166Q96A37 237 aaPredicted RBP7.98□□□□□ -1.13
LINC01239-201ENST00000433645 LRCH3Q96II8 777 aa7.98□□□□□ -1.13
LINC01239-201ENST00000433645 DAXXQ9UER7 740 aaPredicted RBP7.98□□□□□ -1.13
LINC01239-201ENST00000433645 THSD4Q6ZMP0 1018 aa7.97□□□□□ -1.13
LINC01239-201ENST00000433645 NYAP1Q6ZVC0 841 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms