RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 DMRTA1Q5VZB9 504 aa8.75□□□□□ -1.01
CLK1-204ENST00000432425 SPNS2Q8IVW8 549 aa8.75□□□□□ -1.01
CLK1-204ENST00000432425 RBM33Q96EV2 1170 aaKnown RBP8.75□□□□□ -1.01
CLK1-204ENST00000432425 EN1Q05925 392 aaPredicted RBP8.74□□□□□ -1.01
CLK1-204ENST00000432425 MAP3K7O43318 606 aa8.73□□□□□ -1.01
CLK1-204ENST00000432425 PPP1R3GB7ZBB8 358 aa8.72□□□□□ -1.01
CLK1-204ENST00000432425 TK2O00142 265 aa8.72□□□□□ -1.01
CLK1-204ENST00000432425 ADGRD1Q6QNK2 874 aa8.72□□□□□ -1.01
CLK1-204ENST00000432425 C6orf132Q5T0Z8 1188 aa8.71□□□□□ -1.02
CLK1-204ENST00000432425 MLLT3P42568 568 aaPredicted RBP8.7□□□□□ -1.02
CLK1-204ENST00000432425 SEMA3EO15041 775 aa8.69□□□□□ -1.02
CLK1-204ENST00000432425 OSBPP22059 807 aa8.69□□□□□ -1.02
CLK1-204ENST00000432425 COL9A1P20849 921 aa8.69□□□□□ -1.02
CLK1-204ENST00000432425 STAC3Q96MF2 364 aa8.69□□□□□ -1.02
CLK1-204ENST00000432425 ZBED2Q9BTP6 218 aa8.69□□□□□ -1.02
CLK1-204ENST00000432425 SLC4A5Q9BY07 1137 aa8.69□□□□□ -1.02
CLK1-204ENST00000432425 TSR1Q2NL82 804 aaKnown RBP8.68□□□□□ -1.02
CLK1-204ENST00000432425 VPS9D1Q9Y2B5 631 aa8.68□□□□□ -1.02
CLK1-204ENST00000432425 PRIM1P49642 420 aaKnown RBP8.67□□□□□ -1.02
CLK1-204ENST00000432425 MYT1LQ9UL68 1186 aa8.67□□□□□ -1.02
CLK1-204ENST00000432425 SMYD5Q6GMV2 418 aa8.65□□□□□ -1.02
CLK1-204ENST00000432425 CERKQ8TCT0 537 aa8.65□□□□□ -1.03
CLK1-204ENST00000432425 TESPA1A2RU30 521 aaPredicted RBP8.64□□□□□ -1.03
CLK1-204ENST00000432425 HRO43593 1189 aa8.64□□□□□ -1.03
CLK1-204ENST00000432425 PROX2Q3B8N5 592 aa8.64□□□□□ -1.03
CLK1-204ENST00000432425 RNF166Q96A37 237 aaPredicted RBP8.63□□□□□ -1.03
CLK1-204ENST00000432425 CDHR5Q9HBB8 845 aa8.63□□□□□ -1.03
CLK1-204ENST00000432425 NBPF3Q9H094 633 aa8.62□□□□□ -1.03
CLK1-204ENST00000432425 TRIM6-TRIM34B2RNG4 842 aa8.61□□□□□ -1.03
CLK1-204ENST00000432425 ONECUT3O60422 494 aaPredicted RBP8.61□□□□□ -1.03
CLK1-204ENST00000432425 SLC24A1O60721 1099 aa8.61□□□□□ -1.03
CLK1-204ENST00000432425 RABGEF1Q9UJ41 708 aa8.61□□□□□ -1.03
CLK1-204ENST00000432425 NUTM2FA1L443 756 aa8.6□□□□□ -1.03
CLK1-204ENST00000432425 MRPL50Q8N5N7 158 aaKnown RBP8.6□□□□□ -1.03
CLK1-204ENST00000432425 TULP1O00294 542 aaPredicted RBP8.59□□□□□ -1.03
CLK1-204ENST00000432425 GOLGA8CPA6NN73 597 aa8.59□□□□□ -1.03
CLK1-204ENST00000432425 BHMG1C9JSJ3 638 aaPredicted RBP8.59□□□□□ -1.03
CLK1-204ENST00000432425 PRSS12P56730 875 aa8.59□□□□□ -1.03
CLK1-204ENST00000432425 CDCA7LQ96GN5 454 aa8.59□□□□□ -1.03
CLK1-204ENST00000432425 KIAA1468Q9P260 1216 aa8.59□□□□□ -1.03
CLK1-204ENST00000432425 PACS2Q86VP3 889 aa8.58□□□□□ -1.04
CLK1-204ENST00000432425 TSKSQ9UJT2 592 aa8.57□□□□□ -1.04
CLK1-204ENST00000432425 RBM26Q5T8P6 1007 aaKnown RBP8.56□□□□□ -1.04
CLK1-204ENST00000432425 RBM27Q9P2N5 1060 aaKnown RBP8.56□□□□□ -1.04
CLK1-204ENST00000432425 NPDC1Q9NQX5 325 aaPredicted RBP8.56□□□□□ -1.04
CLK1-204ENST00000432425 LAPTM4BQ86VI4 370 aa8.55□□□□□ -1.04
CLK1-204ENST00000432425 KCTD12Q96CX2 325 aaKnown RBP8.55□□□□□ -1.04
CLK1-204ENST00000432425 NBPF26B4DH59 902 aa8.54□□□□□ -1.04
CLK1-204ENST00000432425 FCHSD2O94868 740 aa8.54□□□□□ -1.04
CLK1-204ENST00000432425 PTGDRQ13258 359 aa8.54□□□□□ -1.04
CLK1-204ENST00000432425 PADI6Q6TGC4 694 aa8.54□□□□□ -1.04
CLK1-204ENST00000432425 SEPT9Q9UHD8 586 aaPredicted RBP8.54□□□□□ -1.04
CLK1-204ENST00000432425 WNT2BQ93097 391 aa8.53□□□□□ -1.04
CLK1-204ENST00000432425 FAM198AQ9UFP1 575 aa8.53□□□□□ -1.04
CLK1-204ENST00000432425 FAM98CQ17RN3 349 aaKnown RBP8.52□□□□□ -1.05
CLK1-204ENST00000432425 PNMA3Q9UL41 463 aa8.52□□□□□ -1.05
CLK1-204ENST00000432425 GPIHBP1Q8IV16 184 aa8.51□□□□□ -1.05
CLK1-204ENST00000432425 TATDN2Q93075 761 aa8.51□□□□□ -1.05
CLK1-204ENST00000432425 ANKK1Q8NFD2 765 aa8.5□□□□□ -1.05
CLK1-204ENST00000432425 TTC13Q8NBP0 860 aa8.49□□□□□ -1.05
CLK1-204ENST00000432425 SMAPO00193 183 aa8.49□□□□□ -1.05
CLK1-204ENST00000432425 HIC1Q14526 733 aa8.49□□□□□ -1.05
CLK1-204ENST00000432425 NUDT18Q6ZVK8 323 aa8.49□□□□□ -1.05
CLK1-204ENST00000432425 ZFRQ96KR1 1074 aaKnown RBP8.49□□□□□ -1.05
CLK1-204ENST00000432425 HCSTQ9UBK5 93 aa8.49□□□□□ -1.05
CLK1-204ENST00000432425 THSD4Q6ZMP0 1018 aa8.48□□□□□ -1.05
CLK1-204ENST00000432425 PTPN5P54829 565 aa8.46□□□□□ -1.05
CLK1-204ENST00000432425 C3orf80F5H4A9 247 aa8.46□□□□□ -1.06
CLK1-204ENST00000432425 GNPATO15228 680 aa8.46□□□□□ -1.06
CLK1-204ENST00000432425 GPR37O15354 613 aa8.45□□□□□ -1.06
CLK1-204ENST00000432425 LRCH3Q96II8 777 aa8.45□□□□□ -1.06
CLK1-204ENST00000432425 SOWAHBA6NEL2 793 aa8.44□□□□□ -1.06
CLK1-204ENST00000432425 BCAMP50895 628 aa8.44□□□□□ -1.06
CLK1-204ENST00000432425 HDGFP51858 240 aaKnown RBP8.44□□□□□ -1.06
CLK1-204ENST00000432425 RBM46Q8TBY0 533 aaKnown RBP8.44□□□□□ -1.06
CLK1-204ENST00000432425 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.44□□□□□ -1.06
CLK1-204ENST00000432425 LMOD2Q6P5Q4 547 aa8.43□□□□□ -1.06
CLK1-204ENST00000432425 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.43□□□□□ -1.06
CLK1-204ENST00000432425 ADGRG1Q9Y653 693 aa8.43□□□□□ -1.06
CLK1-204ENST00000432425 SAMD7Q7Z3H4 446 aa8.42□□□□□ -1.06
CLK1-204ENST00000432425 EYA1Q99502 592 aa8.42□□□□□ -1.06
CLK1-204ENST00000432425 FAM161AQ3B820 660 aa8.41□□□□□ -1.06
CLK1-204ENST00000432425 OATP04181 439 aa8.4□□□□□ -1.06
CLK1-204ENST00000432425 FECHP22830 423 aa8.4□□□□□ -1.06
CLK1-204ENST00000432425 HPS5Q9UPZ3 1129 aa8.4□□□□□ -1.06
CLK1-204ENST00000432425 RNF40O75150 1001 aa8.4□□□□□ -1.07
CLK1-204ENST00000432425 DNAJB2P25686 324 aa8.4□□□□□ -1.07
CLK1-204ENST00000432425 SLC4A3P48751 1232 aa8.4□□□□□ -1.07
CLK1-204ENST00000432425 BCANQ96GW7 911 aa8.39□□□□□ -1.07
CLK1-204ENST00000432425 TSR3Q9UJK0 312 aaKnown RBP8.39□□□□□ -1.07
CLK1-204ENST00000432425 SWT1Q5T5J6 900 aaKnown RBP8.38□□□□□ -1.07
CLK1-204ENST00000432425 PPP4CP60510 307 aa8.37□□□□□ -1.07
CLK1-204ENST00000432425 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.37□□□□□ -1.07
CLK1-204ENST00000432425 RCCD1A6NED2 376 aa8.37□□□□□ -1.07
CLK1-204ENST00000432425 NYAP1Q6ZVC0 841 aa8.37□□□□□ -1.07
CLK1-204ENST00000432425 SLF2Q8IX21 1173 aa8.37□□□□□ -1.07
CLK1-204ENST00000432425 PXYLP1Q8TE99 480 aa8.37□□□□□ -1.07
CLK1-204ENST00000432425 WBP1LQ9NX94 342 aa8.37□□□□□ -1.07
CLK1-204ENST00000432425 METTL3Q86U44 580 aaKnown RBP8.36□□□□□ -1.07
CLK1-204ENST00000432425 NECTIN2Q92692 538 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms