RNA–Protein interactions for RNA: ENST00000429102.6

CDH3-202, Transcript of cadherin 3, humanhuman

TSL 1 (best) BASIC

Gene CDH3, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-202ENST00000429102 BACH2Q9BYV9 841 aa16.42■□□□□ 0.22
CDH3-202ENST00000429102 ARHGEF11O15085 1522 aa16.41■□□□□ 0.22
CDH3-202ENST00000429102 KNSTRNQ9Y448 316 aa16.4■□□□□ 0.22
CDH3-202ENST00000429102 ABCA5Q8WWZ7 1642 aa16.39■□□□□ 0.21
CDH3-202ENST00000429102 BCORL1Q5H9F3 1711 aa16.39■□□□□ 0.21
CDH3-202ENST00000429102 RNF123Q5XPI4 1314 aa16.38■□□□□ 0.21
CDH3-202ENST00000429102 CANXP27824 592 aaKnown RBP16.38■□□□□ 0.21
CDH3-202ENST00000429102 TROQ12816 1431 aaPredicted RBP16.38■□□□□ 0.21
CDH3-202ENST00000429102 CHGAP10645 457 aaKnown RBP16.38■□□□□ 0.21
CDH3-202ENST00000429102 WDR62O43379 1518 aa16.37■□□□□ 0.21
CDH3-202ENST00000429102 GPATCH8Q9UKJ3 1502 aaKnown RBP16.37■□□□□ 0.21
CDH3-202ENST00000429102 TMF1P82094 1093 aa16.37■□□□□ 0.21
CDH3-202ENST00000429102 BRD4O60885 1362 aaPredicted RBP16.37■□□□□ 0.21
CDH3-202ENST00000429102 BRPF3Q9ULD4 1205 aa16.36■□□□□ 0.21
CDH3-202ENST00000429102 FRAT1Q92837 279 aaPredicted RBP16.36■□□□□ 0.21
CDH3-202ENST00000429102 C9orf84Q5VXU9 1444 aa16.35■□□□□ 0.21
CDH3-202ENST00000429102 DISP3Q9P2K9 1392 aa16.35■□□□□ 0.21
CDH3-202ENST00000429102 GCC2Q8IWJ2 1684 aa16.34■□□□□ 0.21
CDH3-202ENST00000429102 RRP7AQ9Y3A4 280 aaKnown RBP16.34■□□□□ 0.21
CDH3-202ENST00000429102 CCDC144AA2RUR9 1427 aa16.34■□□□□ 0.21
CDH3-202ENST00000429102 APAF1O14727 1248 aa16.33■□□□□ 0.21
CDH3-202ENST00000429102 PER1O15534 1290 aaPredicted RBP16.33■□□□□ 0.21
CDH3-202ENST00000429102 BCAR3O75815 825 aa16.33■□□□□ 0.2
CDH3-202ENST00000429102 SPRYD3Q8NCJ5 442 aa16.33■□□□□ 0.2
CDH3-202ENST00000429102 DISP1Q96F81 1524 aa16.32■□□□□ 0.2
CDH3-202ENST00000429102 BCL2L13Q9BXK5 485 aa16.32■□□□□ 0.2
CDH3-202ENST00000429102 KIF21AQ7Z4S6 1674 aa16.32■□□□□ 0.2
CDH3-202ENST00000429102 PDE3BQ13370 1112 aa16.29■□□□□ 0.2
CDH3-202ENST00000429102 SLKQ9H2G2 1235 aaPredicted RBP16.29■□□□□ 0.2
CDH3-202ENST00000429102 KIAA0586Q9BVV6 1533 aa16.29■□□□□ 0.2
CDH3-202ENST00000429102 NFKBIBQ15653 356 aa16.28■□□□□ 0.2
CDH3-202ENST00000429102 ARID4BQ4LE39 1312 aaPredicted RBP16.28■□□□□ 0.2
CDH3-202ENST00000429102 CLUAP1Q96AJ1 413 aa16.28■□□□□ 0.2
CDH3-202ENST00000429102 SPINK5Q9NQ38 1064 aaPredicted RBP16.28■□□□□ 0.2
CDH3-202ENST00000429102 LRPPRCP42704 1394 aaKnown RBP16.28■□□□□ 0.2
CDH3-202ENST00000429102 ERCC6Q03468 1493 aa16.28■□□□□ 0.2
CDH3-202ENST00000429102 GOLGA2Q08379 1002 aa16.28■□□□□ 0.2
CDH3-202ENST00000429102 KIF14Q15058 1648 aa16.28■□□□□ 0.2
CDH3-202ENST00000429102 DNMT1P26358 1616 aaKnown RBP16.27■□□□□ 0.2
CDH3-202ENST00000429102 PPP2R1AP30153 589 aa16.27■□□□□ 0.2
CDH3-202ENST00000429102 TESK2Q96S53 571 aa16.27■□□□□ 0.2
CDH3-202ENST00000429102 PPM1GO15355 546 aaPredicted RBP16.27■□□□□ 0.19
CDH3-202ENST00000429102 FRAT2O75474 233 aaPredicted RBP16.26■□□□□ 0.19
CDH3-202ENST00000429102 CARMIL2Q6F5E8 1435 aa16.26■□□□□ 0.19
CDH3-202ENST00000429102 COG6Q9Y2V7 657 aa16.26■□□□□ 0.19
CDH3-202ENST00000429102 NUTM2DQ5VT03 806 aaPredicted RBP16.25■□□□□ 0.19
CDH3-202ENST00000429102 TARBP1Q13395 1621 aaKnown RBP16.25■□□□□ 0.19
CDH3-202ENST00000429102 PANK1Q8TE04 598 aa16.25■□□□□ 0.19
CDH3-202ENST00000429102 DMRT2Q9Y5R5 561 aa16.23■□□□□ 0.19
CDH3-202ENST00000429102 DDRGK1Q96HY6 314 aa16.23■□□□□ 0.19
CDH3-202ENST00000429102 AFAP1Q8N556 730 aa16.23■□□□□ 0.19
CDH3-202ENST00000429102 GRIN2AQ12879 1464 aa16.22■□□□□ 0.19
CDH3-202ENST00000429102 SAFB2Q14151 953 aaKnown RBP eCLIP16.22■□□□□ 0.19
CDH3-202ENST00000429102 PLEKHH1Q9ULM0 1364 aa16.22■□□□□ 0.19
CDH3-202ENST00000429102 ADAMTS12P58397 1594 aa16.22■□□□□ 0.19
CDH3-202ENST00000429102 MS4A1P11836 297 aa16.22■□□□□ 0.19
CDH3-202ENST00000429102 DUSP27Q5VZP5 1158 aa16.22■□□□□ 0.19
CDH3-202ENST00000429102 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.21■□□□□ 0.19
CDH3-202ENST00000429102 RALGAPBQ86X10 1494 aa16.21■□□□□ 0.19
CDH3-202ENST00000429102 RAPGEF6Q8TEU7 1601 aa16.21■□□□□ 0.19
CDH3-202ENST00000429102 PARD3Q8TEW0 1356 aa16.21■□□□□ 0.19
CDH3-202ENST00000429102 MRC2Q9UBG0 1479 aa16.2■□□□□ 0.18
CDH3-202ENST00000429102 KIAA0556O60303 1618 aa16.2■□□□□ 0.18
CDH3-202ENST00000429102 KDM5CP41229 1560 aa16.2■□□□□ 0.18
CDH3-202ENST00000429102 GSE1Q14687 1217 aa16.19■□□□□ 0.18
CDH3-202ENST00000429102 MBD5Q9P267 1494 aa16.19■□□□□ 0.18
CDH3-202ENST00000429102 FAM161AQ3B820 660 aa16.19■□□□□ 0.18
CDH3-202ENST00000429102 CFAP70Q5T0N1 1121 aa16.19■□□□□ 0.18
CDH3-202ENST00000429102 PTPRGP23470 1445 aa16.19■□□□□ 0.18
CDH3-202ENST00000429102 PRKCSHP14314 528 aaPredicted RBP16.18■□□□□ 0.18
CDH3-202ENST00000429102 TNNQ9UQP3 1299 aa16.18■□□□□ 0.18
CDH3-202ENST00000429102 IGHDP01880 384 aa16.18■□□□□ 0.18
CDH3-202ENST00000429102 ERBINQ96RT1 1412 aa16.18■□□□□ 0.18
CDH3-202ENST00000429102 ATP10BO94823 1461 aa16.17■□□□□ 0.18
CDH3-202ENST00000429102 CENPQQ7L2Z9 268 aaPredicted RBP16.17■□□□□ 0.18
CDH3-202ENST00000429102 MAGI1Q96QZ7 1491 aaPredicted RBP16.16■□□□□ 0.18
CDH3-202ENST00000429102 SEC24BO95487 1268 aa16.16■□□□□ 0.18
CDH3-202ENST00000429102 PBRM1Q86U86 1689 aa16.16■□□□□ 0.18
CDH3-202ENST00000429102 PLEKHH2Q8IVE3 1493 aa16.16■□□□□ 0.18
CDH3-202ENST00000429102 TRAK1Q9UPV9 953 aa16.15■□□□□ 0.18
CDH3-202ENST00000429102 PRAG1Q86YV5 1406 aa16.15■□□□□ 0.18
CDH3-202ENST00000429102 GZF1Q9H116 711 aaPredicted RBP16.15■□□□□ 0.18
CDH3-202ENST00000429102 C8orf34Q49A92 452 aa16.14■□□□□ 0.17
CDH3-202ENST00000429102 KIF3BO15066 747 aa16.14■□□□□ 0.17
CDH3-202ENST00000429102 UHRF1BP1Q6BDS2 1440 aa16.13■□□□□ 0.17
CDH3-202ENST00000429102 IFT140Q96RY7 1462 aa16.13■□□□□ 0.17
CDH3-202ENST00000429102 AMER1Q5JTC6 1135 aaPredicted RBP16.12■□□□□ 0.17
CDH3-202ENST00000429102 SLFN5Q08AF3 891 aa16.11■□□□□ 0.17
CDH3-202ENST00000429102 TMEM132EQ6IEE7 984 aa16.11■□□□□ 0.17
CDH3-202ENST00000429102 USP35Q9P2H5 1018 aa16.09■□□□□ 0.17
CDH3-202ENST00000429102 MORC1Q86VD1 984 aa16.09■□□□□ 0.17
CDH3-202ENST00000429102 SLC12A5Q9H2X9 1139 aa16.09■□□□□ 0.17
CDH3-202ENST00000429102 A2MP01023 1474 aa16.09■□□□□ 0.17
CDH3-202ENST00000429102 FAM135AQ9P2D6 1515 aa16.08■□□□□ 0.16
CDH3-202ENST00000429102 CENPJQ9HC77 1338 aaPredicted RBP16.08■□□□□ 0.16
CDH3-202ENST00000429102 POGKQ9P215 609 aa16.07■□□□□ 0.16
CDH3-202ENST00000429102 KDM2BQ8NHM5 1336 aa16.07■□□□□ 0.16
CDH3-202ENST00000429102 ARHGAP5Q13017 1502 aa16.06■□□□□ 0.16
CDH3-202ENST00000429102 U2SURPO15042 1029 aaKnown RBP16.06■□□□□ 0.16
CDH3-202ENST00000429102 ADGRL2O95490 1459 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms