RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 RBM33Q96EV2 1170 aaKnown RBP13.9□□□□□ -0.18
TCOF1-204ENST00000427724 RRBP1Q9P2E9 1410 aaKnown RBP13.9□□□□□ -0.18
TCOF1-204ENST00000427724 RTF1Q92541 710 aaKnown RBP13.9□□□□□ -0.18
TCOF1-204ENST00000427724 SYTL4Q96C24 671 aaPredicted RBP13.9□□□□□ -0.18
TCOF1-204ENST00000427724 TOP2BQ02880 1626 aa13.9□□□□□ -0.18
TCOF1-204ENST00000427724 KLHL34Q8N239 644 aa13.89□□□□□ -0.19
TCOF1-204ENST00000427724 DMRT2Q9Y5R5 561 aa13.89□□□□□ -0.19
TCOF1-204ENST00000427724 TROQ12816 1431 aaPredicted RBP13.88□□□□□ -0.19
TCOF1-204ENST00000427724 NOP58Q9Y2X3 529 aaKnown RBP13.88□□□□□ -0.19
TCOF1-204ENST00000427724 ERICH3Q5RHP9 1530 aa13.87□□□□□ -0.19
TCOF1-204ENST00000427724 UBAP1LF5GYI3 381 aa13.86□□□□□ -0.19
TCOF1-204ENST00000427724 FBXO31Q5XUX0 539 aaPredicted RBP13.86□□□□□ -0.19
TCOF1-204ENST00000427724 ANKRD50Q9ULJ7 1429 aa13.85□□□□□ -0.19
TCOF1-204ENST00000427724 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.85□□□□□ -0.19
TCOF1-204ENST00000427724 CASKIN1Q8WXD9 1431 aa13.85□□□□□ -0.19
TCOF1-204ENST00000427724 PMFBP1Q8TBY8 1022 aa13.84□□□□□ -0.19
TCOF1-204ENST00000427724 LRRC9Q6ZRR7 1453 aa13.84□□□□□ -0.19
TCOF1-204ENST00000427724 U2AF1L5P0DN76 240 aaPredicted RBP13.84□□□□□ -0.19
TCOF1-204ENST00000427724 U2AF1Q01081 240 aaKnown RBP eCLIP13.84□□□□□ -0.19
TCOF1-204ENST00000427724 SLC52A1Q9NWF4 448 aa13.84□□□□□ -0.19
TCOF1-204ENST00000427724 SF3B2Q13435 895 aaKnown RBP13.83□□□□□ -0.2
TCOF1-204ENST00000427724 IQGAP2Q13576 1575 aa13.82□□□□□ -0.2
TCOF1-204ENST00000427724 EIF3AQ14152 1382 aaKnown RBP13.82□□□□□ -0.2
TCOF1-204ENST00000427724 STRN4Q9NRL3 753 aa13.82□□□□□ -0.2
TCOF1-204ENST00000427724 PEG3Q9GZU2 1588 aa13.82□□□□□ -0.2
TCOF1-204ENST00000427724 PPP6R1Q9UPN7 881 aa13.82□□□□□ -0.2
TCOF1-204ENST00000427724 ASXL2Q76L83 1435 aa13.81□□□□□ -0.2
TCOF1-204ENST00000427724 XPCQ01831 940 aaPredicted RBP13.81□□□□□ -0.2
TCOF1-204ENST00000427724 NCOA2Q15596 1464 aa13.81□□□□□ -0.2
TCOF1-204ENST00000427724 COG3Q96JB2 828 aa13.81□□□□□ -0.2
TCOF1-204ENST00000427724 EVC2Q86UK5 1308 aa13.8□□□□□ -0.2
TCOF1-204ENST00000427724 PRKCSHP14314 528 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-204ENST00000427724 NLRP6P59044 892 aa13.8□□□□□ -0.2
TCOF1-204ENST00000427724 ARHGEF11O15085 1522 aa13.8□□□□□ -0.2
TCOF1-204ENST00000427724 ADGRL1O94910 1474 aa13.8□□□□□ -0.2
TCOF1-204ENST00000427724 GTF2E1P29083 439 aaPredicted RBP13.8□□□□□ -0.2
TCOF1-204ENST00000427724 CFAP70Q5T0N1 1121 aa13.8□□□□□ -0.2
TCOF1-204ENST00000427724 PNNQ9H307 717 aaKnown RBP13.8□□□□□ -0.2
TCOF1-204ENST00000427724 ST20-MTHFSA0A0A6YYL1 179 aa13.79□□□□□ -0.2
TCOF1-204ENST00000427724 NLRP2Q9NX02 1062 aa13.79□□□□□ -0.2
TCOF1-204ENST00000427724 FGD6Q6ZV73 1430 aa13.79□□□□□ -0.2
TCOF1-204ENST00000427724 DENND4BO75064 1496 aaPredicted RBP13.79□□□□□ -0.2
TCOF1-204ENST00000427724 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.78□□□□□ -0.2
TCOF1-204ENST00000427724 CDK13Q14004 1512 aaKnown RBP13.78□□□□□ -0.2
TCOF1-204ENST00000427724 MYH16Q9H6N6 1097 aa13.78□□□□□ -0.2
TCOF1-204ENST00000427724 ADAMTS2O95450 1211 aa13.77□□□□□ -0.21
TCOF1-204ENST00000427724 AKNAQ7Z591 1439 aa13.76□□□□□ -0.21
TCOF1-204ENST00000427724 ABTB2Q8N961 1025 aa13.76□□□□□ -0.21
TCOF1-204ENST00000427724 TMX4Q9H1E5 349 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-204ENST00000427724 PLEKHH2Q8IVE3 1493 aa13.76□□□□□ -0.21
TCOF1-204ENST00000427724 DCAF8L1A6NGE4 600 aa13.76□□□□□ -0.21
TCOF1-204ENST00000427724 GPRASP1Q5JY77 1395 aa13.74□□□□□ -0.21
TCOF1-204ENST00000427724 TOM1O60784 492 aa13.74□□□□□ -0.21
TCOF1-204ENST00000427724 GOLGA2Q08379 1002 aa13.74□□□□□ -0.21
TCOF1-204ENST00000427724 WDR97A6NE52 1622 aa13.74□□□□□ -0.21
TCOF1-204ENST00000427724 C9orf84Q5VXU9 1444 aa13.74□□□□□ -0.21
TCOF1-204ENST00000427724 CABP2Q9NPB3 220 aa13.74□□□□□ -0.21
TCOF1-204ENST00000427724 PRAM1Q96QH2 718 aa13.73□□□□□ -0.21
TCOF1-204ENST00000427724 PRKRIP1Q9H875 184 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-204ENST00000427724 PRDM11Q9NQV5 511 aa13.73□□□□□ -0.21
TCOF1-204ENST00000427724 PPP1R1BQ9UD71 204 aaPredicted RBP13.73□□□□□ -0.21
TCOF1-204ENST00000427724 FANCAO15360 1455 aa13.72□□□□□ -0.21
TCOF1-204ENST00000427724 FYCO1Q9BQS8 1478 aa13.72□□□□□ -0.21
TCOF1-204ENST00000427724 CENPJQ9HC77 1338 aaPredicted RBP13.72□□□□□ -0.21
TCOF1-204ENST00000427724 NGLY1Q96IV0 654 aa13.72□□□□□ -0.21
TCOF1-204ENST00000427724 GLIPR1L2Q4G1C9 344 aa13.72□□□□□ -0.21
TCOF1-204ENST00000427724 FRAT1Q92837 279 aaPredicted RBP13.71□□□□□ -0.21
TCOF1-204ENST00000427724 EPRSP07814 1512 aaKnown RBP13.71□□□□□ -0.21
TCOF1-204ENST00000427724 TEX14Q8IWB6 1497 aa13.71□□□□□ -0.22
TCOF1-204ENST00000427724 ANO8Q9HCE9 1232 aaPredicted RBP13.71□□□□□ -0.22
TCOF1-204ENST00000427724 TIAM1Q13009 1591 aa13.71□□□□□ -0.22
TCOF1-204ENST00000427724 IDI1Q13907 227 aa13.7□□□□□ -0.22
TCOF1-204ENST00000427724 RAPGEF4Q8WZA2 1011 aa13.7□□□□□ -0.22
TCOF1-204ENST00000427724 KIF21AQ7Z4S6 1674 aa13.7□□□□□ -0.22
TCOF1-204ENST00000427724 C1orf141Q5JVX7 400 aa13.7□□□□□ -0.22
TCOF1-204ENST00000427724 ERICH6BQ5W0A0 696 aa13.69□□□□□ -0.22
TCOF1-204ENST00000427724 WASHC2AQ641Q2 1341 aa13.69□□□□□ -0.22
TCOF1-204ENST00000427724 FTSJ3Q8IY81 847 aaKnown RBP13.69□□□□□ -0.22
TCOF1-204ENST00000427724 OS9Q13438 667 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-204ENST00000427724 FOXO3O43524 673 aa13.68□□□□□ -0.22
TCOF1-204ENST00000427724 EFCAB5A4FU69 1503 aa13.68□□□□□ -0.22
TCOF1-204ENST00000427724 ZC3H6P61129 1189 aaKnown RBP13.67□□□□□ -0.22
TCOF1-204ENST00000427724 G3V3G9 751 aa13.67□□□□□ -0.22
TCOF1-204ENST00000427724 TEFQ10587 303 aa13.67□□□□□ -0.22
TCOF1-204ENST00000427724 DCAF8Q5TAQ9 597 aa13.67□□□□□ -0.22
TCOF1-204ENST00000427724 AMOTL2Q9Y2J4 779 aa13.67□□□□□ -0.22
TCOF1-204ENST00000427724 NGEFQ8N5V2 710 aa13.66□□□□□ -0.22
TCOF1-204ENST00000427724 TOM1L2Q6ZVM7 507 aa13.66□□□□□ -0.22
TCOF1-204ENST00000427724 PANK3Q9H999 370 aa13.65□□□□□ -0.22
TCOF1-204ENST00000427724 FANCIQ9NVI1 1328 aa13.65□□□□□ -0.22
TCOF1-204ENST00000427724 PDE3BQ13370 1112 aa13.65□□□□□ -0.22
TCOF1-204ENST00000427724 GGNBP2Q9H3C7 697 aa13.65□□□□□ -0.22
TCOF1-204ENST00000427724 WDR62O43379 1518 aa13.64□□□□□ -0.23
TCOF1-204ENST00000427724 WAPLQ7Z5K2 1190 aa13.63□□□□□ -0.23
TCOF1-204ENST00000427724 CHMP3Q9Y3E7 222 aa13.63□□□□□ -0.23
TCOF1-204ENST00000427724 NCKAP5LQ9HCH0 1330 aa13.63□□□□□ -0.23
TCOF1-204ENST00000427724 KTN1Q86UP2 1357 aaKnown RBP13.63□□□□□ -0.23
TCOF1-204ENST00000427724 TTC5Q8N0Z6 440 aa13.62□□□□□ -0.23
TCOF1-204ENST00000427724 CGNL1Q0VF96 1302 aa13.62□□□□□ -0.23
TCOF1-204ENST00000427724 CCDC184Q52MB2 194 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms