RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CFAP44Q96MT7 982 aa14.6□□□□□ -0.07
LINC01040-201ENST00000425048 EPAS1Q99814 870 aa14.6□□□□□ -0.07
LINC01040-201ENST00000425048 NBPF3Q9H094 633 aa14.59□□□□□ -0.07
LINC01040-201ENST00000425048 PTPN5P54829 565 aa14.57□□□□□ -0.08
LINC01040-201ENST00000425048 COL9A1P20849 921 aa14.55□□□□□ -0.08
LINC01040-201ENST00000425048 WNT2BQ93097 391 aa14.54□□□□□ -0.08
LINC01040-201ENST00000425048 RABGEF1Q9UJ41 708 aa14.54□□□□□ -0.08
LINC01040-201ENST00000425048 C6orf132Q5T0Z8 1188 aa14.53□□□□□ -0.08
LINC01040-201ENST00000425048 WDR70Q9NW82 654 aa14.53□□□□□ -0.08
LINC01040-201ENST00000425048 PROX2Q3B8N5 592 aa14.52□□□□□ -0.09
LINC01040-201ENST00000425048 THSD4Q6ZMP0 1018 aa14.52□□□□□ -0.09
LINC01040-201ENST00000425048 DDX12PQ92771 950 aa14.51□□□□□ -0.09
LINC01040-201ENST00000425048 E2F4Q16254 413 aa14.5□□□□□ -0.09
LINC01040-201ENST00000425048 SPDYE16A6NNV3 312 aaPredicted RBP14.49□□□□□ -0.09
LINC01040-201ENST00000425048 ONECUT3O60422 494 aaPredicted RBP14.48□□□□□ -0.09
LINC01040-201ENST00000425048 RBM33Q96EV2 1170 aaKnown RBP14.48□□□□□ -0.09
LINC01040-201ENST00000425048 PDIA6Q15084 440 aa14.47□□□□□ -0.09
LINC01040-201ENST00000425048 KIAA1468Q9P260 1216 aa14.46□□□□□ -0.09
LINC01040-201ENST00000425048 LAPTM4BQ86VI4 370 aa14.44□□□□□ -0.1
LINC01040-201ENST00000425048 NBR1Q14596 966 aa14.42□□□□□ -0.1
LINC01040-201ENST00000425048 ANKK1Q8NFD2 765 aa14.42□□□□□ -0.1
LINC01040-201ENST00000425048 ARIH1Q9Y4X5 557 aaPredicted RBP14.42□□□□□ -0.1
LINC01040-201ENST00000425048 TRIM6-TRIM34B2RNG4 842 aa14.39□□□□□ -0.11
LINC01040-201ENST00000425048 MAP3K7O43318 606 aa14.39□□□□□ -0.11
LINC01040-201ENST00000425048 EN1Q05925 392 aaPredicted RBP14.39□□□□□ -0.11
LINC01040-201ENST00000425048 ZFRQ96KR1 1074 aaKnown RBP14.36□□□□□ -0.11
LINC01040-201ENST00000425048 TSR1Q2NL82 804 aaKnown RBP14.35□□□□□ -0.11
LINC01040-201ENST00000425048 IFFO2Q5TF58 517 aa14.35□□□□□ -0.11
LINC01040-201ENST00000425048 SEPT9Q9UHD8 586 aaPredicted RBP14.34□□□□□ -0.11
LINC01040-201ENST00000425048 SOWAHBA6NEL2 793 aa14.33□□□□□ -0.12
LINC01040-201ENST00000425048 GRXCR2A6NFK2 248 aa14.33□□□□□ -0.12
LINC01040-201ENST00000425048 PACS2Q86VP3 889 aa14.33□□□□□ -0.12
LINC01040-201ENST00000425048 BCAMP50895 628 aa14.32□□□□□ -0.12
LINC01040-201ENST00000425048 FAM98CQ17RN3 349 aaKnown RBP14.31□□□□□ -0.12
LINC01040-201ENST00000425048 CERKQ8TCT0 537 aa14.29□□□□□ -0.12
LINC01040-201ENST00000425048 TSKSQ9UJT2 592 aa14.28□□□□□ -0.12
LINC01040-201ENST00000425048 NYAP1Q6ZVC0 841 aa14.26□□□□□ -0.13
LINC01040-201ENST00000425048 CDCA7LQ96GN5 454 aa14.26□□□□□ -0.13
LINC01040-201ENST00000425048 PRSS12P56730 875 aa14.25□□□□□ -0.13
LINC01040-201ENST00000425048 OSBPP22059 807 aa14.24□□□□□ -0.13
LINC01040-201ENST00000425048 PRIM1P49642 420 aaKnown RBP14.24□□□□□ -0.13
LINC01040-201ENST00000425048 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.24□□□□□ -0.13
LINC01040-201ENST00000425048 LRCH3Q96II8 777 aa14.23□□□□□ -0.13
LINC01040-201ENST00000425048 TSHZ2Q9NRE2 1034 aa14.23□□□□□ -0.13
LINC01040-201ENST00000425048 WBP1LQ9NX94 342 aa14.23□□□□□ -0.13
LINC01040-201ENST00000425048 RGS20O76081 388 aa14.21□□□□□ -0.13
LINC01040-201ENST00000425048 TSR3Q9UJK0 312 aaKnown RBP14.2□□□□□ -0.14
LINC01040-201ENST00000425048 A0A0G2JS52 829 aa14.19□□□□□ -0.14
LINC01040-201ENST00000425048 ITGBL1O95965 494 aaPredicted RBP14.18□□□□□ -0.14
LINC01040-201ENST00000425048 HPS5Q9UPZ3 1129 aa14.18□□□□□ -0.14
LINC01040-201ENST00000425048 FAM198AQ9UFP1 575 aa14.17□□□□□ -0.14
LINC01040-201ENST00000425048 SMAPO00193 183 aa14.16□□□□□ -0.14
LINC01040-201ENST00000425048 ARHGEF1Q92888 912 aaKnown RBP14.16□□□□□ -0.14
LINC01040-201ENST00000425048 TATDN2Q93075 761 aa14.16□□□□□ -0.14
LINC01040-201ENST00000425048 NBPF26B4DH59 902 aa14.14□□□□□ -0.15
LINC01040-201ENST00000425048 PPP4CP60510 307 aa14.14□□□□□ -0.15
LINC01040-201ENST00000425048 CDHR5Q9HBB8 845 aa14.14□□□□□ -0.15
LINC01040-201ENST00000425048 PNMA3Q9UL41 463 aa14.14□□□□□ -0.15
LINC01040-201ENST00000425048 RBM27Q9P2N5 1060 aaKnown RBP14.12□□□□□ -0.15
LINC01040-201ENST00000425048 KCNC4Q03721 635 aa14.11□□□□□ -0.15
LINC01040-201ENST00000425048 SAMD7Q7Z3H4 446 aa14.11□□□□□ -0.15
LINC01040-201ENST00000425048 HDGFP51858 240 aaKnown RBP14.1□□□□□ -0.15
LINC01040-201ENST00000425048 C3orf80F5H4A9 247 aa14.09□□□□□ -0.15
LINC01040-201ENST00000425048 NUDT18Q6ZVK8 323 aa14.09□□□□□ -0.15
LINC01040-201ENST00000425048 NPDC1Q9NQX5 325 aaPredicted RBP14.08□□□□□ -0.16
LINC01040-201ENST00000425048 KCNV2Q8TDN2 545 aa14.07□□□□□ -0.16
LINC01040-201ENST00000425048 TTC13Q8NBP0 860 aa14.05□□□□□ -0.16
LINC01040-201ENST00000425048 MLLT3P42568 568 aaPredicted RBP14.04□□□□□ -0.16
LINC01040-201ENST00000425048 PADI6Q6TGC4 694 aa14.02□□□□□ -0.17
LINC01040-201ENST00000425048 P3H3Q8IVL6 736 aa13.98□□□□□ -0.17
LINC01040-201ENST00000425048 IRX2Q9BZI1 471 aaPredicted RBP13.98□□□□□ -0.17
LINC01040-201ENST00000425048 RNF40O75150 1001 aa13.97□□□□□ -0.17
LINC01040-201ENST00000425048 TJAP1Q5JTD0 557 aa13.95□□□□□ -0.18
LINC01040-201ENST00000425048 NECTIN2Q92692 538 aa13.95□□□□□ -0.18
LINC01040-201ENST00000425048 SWT1Q5T5J6 900 aaKnown RBP13.94□□□□□ -0.18
LINC01040-201ENST00000425048 SLF2Q8IX21 1173 aa13.93□□□□□ -0.18
LINC01040-201ENST00000425048 EYA1Q99502 592 aa13.93□□□□□ -0.18
LINC01040-201ENST00000425048 SLC4A3P48751 1232 aa13.92□□□□□ -0.18
LINC01040-201ENST00000425048 PTGDRQ13258 359 aa13.92□□□□□ -0.18
LINC01040-201ENST00000425048 IL21Q9HBE4 155 aa13.92□□□□□ -0.18
LINC01040-201ENST00000425048 MTRQ99707 1265 aa13.91□□□□□ -0.18
LINC01040-201ENST00000425048 NUTM2FA1L443 756 aa13.89□□□□□ -0.19
LINC01040-201ENST00000425048 APLP1P51693 650 aa13.89□□□□□ -0.19
LINC01040-201ENST00000425048 PLCB2Q00722 1185 aa13.88□□□□□ -0.19
LINC01040-201ENST00000425048 SEMA3EO15041 775 aa13.86□□□□□ -0.19
LINC01040-201ENST00000425048 RBM46Q8TBY0 533 aaKnown RBP13.85□□□□□ -0.19
LINC01040-201ENST00000425048 ZNF516Q92618 1163 aa13.84□□□□□ -0.19
LINC01040-201ENST00000425048 DNAJB2P25686 324 aa13.83□□□□□ -0.2
LINC01040-201ENST00000425048 FCHSD2O94868 740 aa13.82□□□□□ -0.2
LINC01040-201ENST00000425048 ADGRG1Q9Y653 693 aa13.82□□□□□ -0.2
LINC01040-201ENST00000425048 PPP1R18Q6NYC8 613 aa13.8□□□□□ -0.2
LINC01040-201ENST00000425048 PRR14Q9BWN1 585 aa13.8□□□□□ -0.2
LINC01040-201ENST00000425048 COPS2P61201 443 aa13.77□□□□□ -0.21
LINC01040-201ENST00000425048 SMYD5Q6GMV2 418 aa13.77□□□□□ -0.21
LINC01040-201ENST00000425048 TMEM134Q9H6X4 195 aa13.77□□□□□ -0.21
LINC01040-201ENST00000425048 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.77□□□□□ -0.21
LINC01040-201ENST00000425048 RCCD1A6NED2 376 aa13.76□□□□□ -0.21
LINC01040-201ENST00000425048 FAM161AQ3B820 660 aa13.75□□□□□ -0.21
LINC01040-201ENST00000425048 NKX2-3Q8TAU0 364 aa13.75□□□□□ -0.21
LINC01040-201ENST00000425048 TESPA1A2RU30 521 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms