RNA–Protein interactions for RNA: ENST00000423368.6

CNOT4-205, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT4, Length 3,297 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-205ENST00000423368 TRIM6-TRIM34B2RNG4 842 aa8.73□□□□□ -1.01
CNOT4-205ENST00000423368 TRIM34Q9BYJ4 488 aa8.73□□□□□ -1.01
CNOT4-205ENST00000423368 MS4A1P11836 297 aa8.72□□□□□ -1.01
CNOT4-205ENST00000423368 IRX5P78411 483 aaPredicted RBP8.72□□□□□ -1.01
CNOT4-205ENST00000423368 FAM50AQ14320 339 aaKnown RBP8.72□□□□□ -1.01
CNOT4-205ENST00000423368 GAS2L3Q86XJ1 694 aa8.72□□□□□ -1.01
CNOT4-205ENST00000423368 MAP7D2Q96T17 732 aa8.72□□□□□ -1.01
CNOT4-205ENST00000423368 ERICH4A6NGS2 130 aa8.71□□□□□ -1.01
CNOT4-205ENST00000423368 RBM25P49756 843 aaKnown RBP8.71□□□□□ -1.02
CNOT4-205ENST00000423368 RRP1P56182 461 aaKnown RBP8.71□□□□□ -1.02
CNOT4-205ENST00000423368 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.71□□□□□ -1.02
CNOT4-205ENST00000423368 CRBNQ96SW2 442 aa8.71□□□□□ -1.02
CNOT4-205ENST00000423368 TNNT1P13805 278 aa8.71□□□□□ -1.02
CNOT4-205ENST00000423368 C20orf194Q5TEA3 1177 aa8.71□□□□□ -1.02
CNOT4-205ENST00000423368 PRKRIP1Q9H875 184 aaPredicted RBP8.71□□□□□ -1.02
CNOT4-205ENST00000423368 U3KPZ7 1027 aaPredicted RBP8.71□□□□□ -1.02
CNOT4-205ENST00000423368 OFD1O75665 1012 aa8.7□□□□□ -1.02
CNOT4-205ENST00000423368 ATP2B3Q16720 1220 aa8.7□□□□□ -1.02
CNOT4-205ENST00000423368 CCDC94Q9BW85 323 aaPredicted RBP8.7□□□□□ -1.02
CNOT4-205ENST00000423368 SEC24BO95487 1268 aa8.7□□□□□ -1.02
CNOT4-205ENST00000423368 PANK3Q9H999 370 aa8.69□□□□□ -1.02
CNOT4-205ENST00000423368 MCM4P33991 863 aa8.69□□□□□ -1.02
CNOT4-205ENST00000423368 FAM161AQ3B820 660 aa8.69□□□□□ -1.02
CNOT4-205ENST00000423368 RCAN3Q9UKA8 241 aa8.69□□□□□ -1.02
CNOT4-205ENST00000423368 FSD2A1L4K1 749 aa8.69□□□□□ -1.02
CNOT4-205ENST00000423368 UTP14CQ5TAP6 766 aaKnown RBP8.68□□□□□ -1.02
CNOT4-205ENST00000423368 ZSCAN30Q86W11 494 aa8.68□□□□□ -1.02
CNOT4-205ENST00000423368 LOC102724159A0A0B4J2E5 919 aa8.67□□□□□ -1.02
CNOT4-205ENST00000423368 KIF20AO95235 890 aa8.67□□□□□ -1.02
CNOT4-205ENST00000423368 TNNT3P45378 269 aaPredicted RBP8.67□□□□□ -1.02
CNOT4-205ENST00000423368 FAM193AP78312 1265 aa8.67□□□□□ -1.02
CNOT4-205ENST00000423368 BECN1Q14457 450 aa8.67□□□□□ -1.02
CNOT4-205ENST00000423368 PWP2Q15269 919 aaKnown RBP8.67□□□□□ -1.02
CNOT4-205ENST00000423368 HSPA5P11021 654 aaKnown RBP8.67□□□□□ -1.02
CNOT4-205ENST00000423368 C8orf34Q49A92 452 aa8.67□□□□□ -1.02
CNOT4-205ENST00000423368 CDCA7LQ96GN5 454 aa8.67□□□□□ -1.02
CNOT4-205ENST00000423368 RAB3GAP2Q9H2M9 1393 aa8.66□□□□□ -1.02
CNOT4-205ENST00000423368 SOGA1O94964 1423 aa8.66□□□□□ -1.02
CNOT4-205ENST00000423368 LETM1O95202 739 aaPredicted RBP8.66□□□□□ -1.02
CNOT4-205ENST00000423368 TONSLQ96HA7 1378 aa8.66□□□□□ -1.02
CNOT4-205ENST00000423368 BRPF1P55201 1214 aaPredicted RBP8.65□□□□□ -1.02
CNOT4-205ENST00000423368 NASPP49321 788 aaPredicted RBP8.65□□□□□ -1.02
CNOT4-205ENST00000423368 U2AF2P26368 475 aaKnown RBP eCLIP8.65□□□□□ -1.035e-7■■■■■ 54.6
CNOT4-205ENST00000423368 TOMM22Q9NS69 142 aa8.65□□□□□ -1.03
CNOT4-205ENST00000423368 ATP1B4Q9UN42 357 aaPredicted RBP8.65□□□□□ -1.03
CNOT4-205ENST00000423368 TNIKQ9UKE5 1360 aa8.64□□□□□ -1.03
CNOT4-205ENST00000423368 GPATCH11Q8N954 259 aa8.63□□□□□ -1.03
CNOT4-205ENST00000423368 GTPBP4Q9BZE4 634 aaKnown RBP8.63□□□□□ -1.03
CNOT4-205ENST00000423368 CHRM1P11229 460 aaPredicted RBP8.63□□□□□ -1.03
CNOT4-205ENST00000423368 RB1CC1Q8TDY2 1594 aa8.63□□□□□ -1.03
CNOT4-205ENST00000423368 FAM43BQ6ZT52 329 aaPredicted RBP8.62□□□□□ -1.03
CNOT4-205ENST00000423368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.62□□□□□ -1.032e-6■■□□□ 11.9
CNOT4-205ENST00000423368 TRHP20396 242 aaPredicted RBP8.62□□□□□ -1.03
CNOT4-205ENST00000423368 PTMAP06454 111 aaKnown RBP8.62□□□□□ -1.03
CNOT4-205ENST00000423368 C17orf53Q8N3J3 647 aaPredicted RBP8.62□□□□□ -1.03
CNOT4-205ENST00000423368 DYNC1I1O14576 645 aa8.61□□□□□ -1.03
CNOT4-205ENST00000423368 TBC1D2Q9BYX2 928 aa8.61□□□□□ -1.03
CNOT4-205ENST00000423368 SMG6Q86US8 1419 aaKnown RBP8.6□□□□□ -1.03
CNOT4-205ENST00000423368 MTERF4Q7Z6M4 381 aaKnown RBP8.6□□□□□ -1.03
CNOT4-205ENST00000423368 NKX1-1Q15270 411 aaPredicted RBP8.6□□□□□ -1.03
CNOT4-205ENST00000423368 HS6ST3Q8IZP7 471 aa8.6□□□□□ -1.03
CNOT4-205ENST00000423368 ABCC8Q09428 1581 aa8.59□□□□□ -1.03
CNOT4-205ENST00000423368 RUSC2Q8N2Y8 1516 aa8.59□□□□□ -1.03
CNOT4-205ENST00000423368 RNF214Q8ND24 703 aa8.59□□□□□ -1.03
CNOT4-205ENST00000423368 DNAJC2Q99543 621 aaKnown RBP8.59□□□□□ -1.03
CNOT4-205ENST00000423368 CLIP1P30622 1438 aa8.59□□□□□ -1.03
CNOT4-205ENST00000423368 PTMSP20962 102 aa8.58□□□□□ -1.04
CNOT4-205ENST00000423368 CC2D1BQ5T0F9 858 aaKnown RBP8.58□□□□□ -1.04
CNOT4-205ENST00000423368 ZNF710Q8N1W2 664 aa8.58□□□□□ -1.04
CNOT4-205ENST00000423368 PDCL2Q8N4E4 241 aa8.57□□□□□ -1.04
CNOT4-205ENST00000423368 CAPN2P17655 700 aa8.57□□□□□ -1.04
CNOT4-205ENST00000423368 BCCIPQ9P287 314 aaKnown RBP eCLIP8.57□□□□□ -1.04
CNOT4-205ENST00000423368 CCDC173Q0VFZ6 552 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 SASS6Q6UVJ0 657 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 ANTXR1Q9H6X2 564 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 RNF123Q5XPI4 1314 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 ZCCHC6Q5VYS8 1495 aaKnown RBP8.56□□□□□ -1.04
CNOT4-205ENST00000423368 EIF4G2P78344 907 aaKnown RBP eCLIP8.56□□□□□ -1.04
CNOT4-205ENST00000423368 UPF2Q9HAU5 1272 aaKnown RBP8.56□□□□□ -1.04
CNOT4-205ENST00000423368 CCDC88BA6NC98 1476 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 BANK1Q8NDB2 785 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 STK26Q9P289 416 aa8.56□□□□□ -1.04
CNOT4-205ENST00000423368 TIGD1Q96MW7 591 aa8.55□□□□□ -1.04
CNOT4-205ENST00000423368 DDX49Q9Y6V7 483 aaKnown RBP8.55□□□□□ -1.04
CNOT4-205ENST00000423368 RSF1Q96T23 1441 aaPredicted RBP8.55□□□□□ -1.04
CNOT4-205ENST00000423368 CLGNO14967 610 aa8.55□□□□□ -1.04
CNOT4-205ENST00000423368 NCAPD3P42695 1498 aa8.54□□□□□ -1.04
CNOT4-205ENST00000423368 GTPBP6O43824 516 aaPredicted RBP8.54□□□□□ -1.04
CNOT4-205ENST00000423368 MFAP1P55081 439 aaKnown RBP8.54□□□□□ -1.04
CNOT4-205ENST00000423368 SRPK2P78362 688 aaKnown RBP8.54□□□□□ -1.04
CNOT4-205ENST00000423368 RGL3Q3MIN7 710 aa8.54□□□□□ -1.04
CNOT4-205ENST00000423368 KTN1Q86UP2 1357 aaKnown RBP8.54□□□□□ -1.04
CNOT4-205ENST00000423368 GYS2P54840 703 aa8.53□□□□□ -1.04
CNOT4-205ENST00000423368 TAF3Q5VWG9 929 aa8.53□□□□□ -1.04
CNOT4-205ENST00000423368 USP19O94966 1318 aa8.53□□□□□ -1.04
CNOT4-205ENST00000423368 FAM212AQ96EL1 285 aa8.53□□□□□ -1.04
CNOT4-205ENST00000423368 RSPH14Q9UHP6 348 aa8.53□□□□□ -1.04
CNOT4-205ENST00000423368 PSEN1P49768 467 aa8.53□□□□□ -1.04
CNOT4-205ENST00000423368 CAVIN1Q6NZI2 390 aaKnown RBP8.53□□□□□ -1.04
CNOT4-205ENST00000423368 CHMP5Q9NZZ3 219 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms