RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 CCDC136Q96JN2 1154 aa14.81□□□□□ -0.04
LIMS1-207ENST00000422797 ABCC10Q5T3U5 1492 aa14.8□□□□□ -0.04
LIMS1-207ENST00000422797 PDE3BQ13370 1112 aa14.8□□□□□ -0.04
LIMS1-207ENST00000422797 TMC1Q8TDI8 760 aa14.8□□□□□ -0.04
LIMS1-207ENST00000422797 CDC42BPAQ5VT25 1732 aa14.79□□□□□ -0.04
LIMS1-207ENST00000422797 LAMC1P11047 1609 aa14.79□□□□□ -0.04
LIMS1-207ENST00000422797 ABCA8O94911 1581 aa14.79□□□□□ -0.04
LIMS1-207ENST00000422797 NUP160Q12769 1436 aa14.78□□□□□ -0.04
LIMS1-207ENST00000422797 CARD11Q9BXL7 1154 aa14.77□□□□□ -0.04
LIMS1-207ENST00000422797 WASHC2CQ9Y4E1 1318 aa14.77□□□□□ -0.04
LIMS1-207ENST00000422797 NUP155O75694 1391 aa14.77□□□□□ -0.05
LIMS1-207ENST00000422797 PLB1Q6P1J6 1458 aa14.76□□□□□ -0.05
LIMS1-207ENST00000422797 ARID3CA6NKF2 412 aa14.76□□□□□ -0.05
LIMS1-207ENST00000422797 RSPH4AQ5TD94 716 aa14.76□□□□□ -0.05
LIMS1-207ENST00000422797 PLEKHH2Q8IVE3 1493 aa14.75□□□□□ -0.05
LIMS1-207ENST00000422797 PLEKHD1A6NEE1 506 aa14.74□□□□□ -0.05
LIMS1-207ENST00000422797 TSPY4P0CV99 314 aa14.74□□□□□ -0.05
LIMS1-207ENST00000422797 TSPY10P0CW01 314 aa14.74□□□□□ -0.05
LIMS1-207ENST00000422797 IPO9Q96P70 1041 aaKnown RBP14.74□□□□□ -0.05
LIMS1-207ENST00000422797 EIF2AK4Q9P2K8 1649 aaKnown RBP14.73□□□□□ -0.05
LIMS1-207ENST00000422797 NLRP13Q86W25 1043 aa14.72□□□□□ -0.05
LIMS1-207ENST00000422797 GPRASP1Q5JY77 1395 aa14.72□□□□□ -0.05
LIMS1-207ENST00000422797 CCDC141Q6ZP82 1450 aa14.72□□□□□ -0.05
LIMS1-207ENST00000422797 MAST1Q9Y2H9 1570 aa14.72□□□□□ -0.05
LIMS1-207ENST00000422797 TCERG1O14776 1098 aaKnown RBP14.71□□□□□ -0.05
LIMS1-207ENST00000422797 PARD3Q8TEW0 1356 aa14.71□□□□□ -0.05
LIMS1-207ENST00000422797 TRPM1Q7Z4N2 1603 aa14.71□□□□□ -0.06
LIMS1-207ENST00000422797 MS4A1P11836 297 aa14.71□□□□□ -0.06
LIMS1-207ENST00000422797 ZNF326Q5BKZ1 582 aaKnown RBP14.71□□□□□ -0.06
LIMS1-207ENST00000422797 UNC13BO14795 1591 aa14.7□□□□□ -0.06
LIMS1-207ENST00000422797 RRP1P56182 461 aaKnown RBP14.7□□□□□ -0.06
LIMS1-207ENST00000422797 ZNF777Q9ULD5 760 aaPredicted RBP14.7□□□□□ -0.06
LIMS1-207ENST00000422797 FAM135AQ9P2D6 1515 aa14.69□□□□□ -0.06
LIMS1-207ENST00000422797 PRAG1Q86YV5 1406 aa14.69□□□□□ -0.06
LIMS1-207ENST00000422797 OSCARQ8IYS5 282 aa14.69□□□□□ -0.06
LIMS1-207ENST00000422797 CHMP7Q8WUX9 453 aaPredicted RBP14.69□□□□□ -0.06
LIMS1-207ENST00000422797 ATP10BO94823 1461 aa14.69□□□□□ -0.06
LIMS1-207ENST00000422797 POLR3GLQ9BT43 218 aa14.68□□□□□ -0.06
LIMS1-207ENST00000422797 ZBTB47Q9UFB7 747 aaPredicted RBP14.68□□□□□ -0.06
LIMS1-207ENST00000422797 PREX2Q70Z35 1606 aa14.68□□□□□ -0.06
LIMS1-207ENST00000422797 COL17A1Q9UMD9 1497 aaPredicted RBP14.67□□□□□ -0.06
LIMS1-207ENST00000422797 CCDC144AA2RUR9 1427 aa14.67□□□□□ -0.06
LIMS1-207ENST00000422797 DEKP35659 375 aaKnown RBP14.66□□□□□ -0.06
LIMS1-207ENST00000422797 RTL5Q5HYW3 569 aaPredicted RBP14.66□□□□□ -0.06
LIMS1-207ENST00000422797 PRDM15P57071 1507 aaPredicted RBP14.66□□□□□ -0.06
LIMS1-207ENST00000422797 ST20-MTHFSA0A0A6YYL1 179 aa14.66□□□□□ -0.06
LIMS1-207ENST00000422797 JPH4Q96JJ6 628 aa14.66□□□□□ -0.06
LIMS1-207ENST00000422797 RCAN3Q9UKA8 241 aa14.66□□□□□ -0.06
LIMS1-207ENST00000422797 BLMP54132 1417 aaPredicted RBP14.65□□□□□ -0.06
LIMS1-207ENST00000422797 ATP10AO60312 1499 aa14.65□□□□□ -0.06
LIMS1-207ENST00000422797 RNF39Q9H2S5 420 aa14.65□□□□□ -0.06
LIMS1-207ENST00000422797 PLXNC1O60486 1568 aa14.65□□□□□ -0.06
LIMS1-207ENST00000422797 IQGAP3Q86VI3 1631 aa14.63□□□□□ -0.07
LIMS1-207ENST00000422797 DCAF11Q8TEB1 546 aa14.62□□□□□ -0.07
LIMS1-207ENST00000422797 USP35Q9P2H5 1018 aa14.62□□□□□ -0.07
LIMS1-207ENST00000422797 SAMD9LQ8IVG5 1584 aa14.62□□□□□ -0.07
LIMS1-207ENST00000422797 MAGI2Q86UL8 1455 aa14.59□□□□□ -0.07
LIMS1-207ENST00000422797 RIMBP3CA6NJZ7 1639 aa14.58□□□□□ -0.07
LIMS1-207ENST00000422797 RIMBP3BA6NNM3 1639 aa14.58□□□□□ -0.07
LIMS1-207ENST00000422797 RNF17Q9BXT8 1623 aaKnown RBP14.58□□□□□ -0.07
LIMS1-207ENST00000422797 RIMBP3Q9UFD9 1639 aa14.58□□□□□ -0.07
LIMS1-207ENST00000422797 DDRGK1Q96HY6 314 aa14.58□□□□□ -0.08
LIMS1-207ENST00000422797 STAC3Q96MF2 364 aa14.58□□□□□ -0.08
LIMS1-207ENST00000422797 ERBINQ96RT1 1412 aa14.58□□□□□ -0.08
LIMS1-207ENST00000422797 A2MP01023 1474 aa14.58□□□□□ -0.08
LIMS1-207ENST00000422797 DUOX2Q9NRD8 1548 aa14.57□□□□□ -0.08
LIMS1-207ENST00000422797 PAK3O75914 559 aaPredicted RBP14.57□□□□□ -0.08
LIMS1-207ENST00000422797 CDC42BPBQ9Y5S2 1711 aa14.57□□□□□ -0.08
LIMS1-207ENST00000422797 PER1O15534 1290 aaPredicted RBP14.56□□□□□ -0.08
LIMS1-207ENST00000422797 DCAF8L1A6NGE4 600 aa14.56□□□□□ -0.08
LIMS1-207ENST00000422797 PPM1GO15355 546 aaPredicted RBP14.56□□□□□ -0.08
LIMS1-207ENST00000422797 TMF1P82094 1093 aa14.56□□□□□ -0.08
LIMS1-207ENST00000422797 KDM2AQ9Y2K7 1162 aa14.56□□□□□ -0.08
LIMS1-207ENST00000422797 EXOC6Q8TAG9 804 aa14.55□□□□□ -0.08
LIMS1-207ENST00000422797 BACH2Q9BYV9 841 aa14.55□□□□□ -0.08
LIMS1-207ENST00000422797 CLASP1Q7Z460 1538 aa14.55□□□□□ -0.08
LIMS1-207ENST00000422797 PDE4AP27815 886 aa14.54□□□□□ -0.08
LIMS1-207ENST00000422797 PLA2R1Q13018 1463 aa14.53□□□□□ -0.08
LIMS1-207ENST00000422797 CDCA8Q53HL2 280 aa14.53□□□□□ -0.08
LIMS1-207ENST00000422797 MYO5CQ9NQX4 1742 aa14.53□□□□□ -0.08
LIMS1-207ENST00000422797 SYCP2Q9BX26 1530 aa14.53□□□□□ -0.08
LIMS1-207ENST00000422797 HNRNPMP52272 730 aaKnown RBP eCLIP14.52□□□□□ -0.08
LIMS1-207ENST00000422797 ARHGAP5Q13017 1502 aa14.52□□□□□ -0.09
LIMS1-207ENST00000422797 SLC24A1O60721 1099 aa14.51□□□□□ -0.09
LIMS1-207ENST00000422797 NBR1Q14596 966 aa14.51□□□□□ -0.09
LIMS1-207ENST00000422797 TESK2Q96S53 571 aa14.51□□□□□ -0.09
LIMS1-207ENST00000422797 CNGB1Q14028 1251 aaPredicted RBP14.51□□□□□ -0.09
LIMS1-207ENST00000422797 SYNMO15061 1565 aa14.5□□□□□ -0.09
LIMS1-207ENST00000422797 EIF3AQ14152 1382 aaKnown RBP14.5□□□□□ -0.09
LIMS1-207ENST00000422797 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.5□□□□□ -0.09
LIMS1-207ENST00000422797 NPC1L1Q9UHC9 1359 aa14.5□□□□□ -0.09
LIMS1-207ENST00000422797 SCAPERQ9BY12 1400 aa14.48□□□□□ -0.09
LIMS1-207ENST00000422797 DISP3Q9P2K9 1392 aa14.48□□□□□ -0.09
LIMS1-207ENST00000422797 FBLN2P98095 1184 aa14.48□□□□□ -0.09
LIMS1-207ENST00000422797 NGEFQ8N5V2 710 aa14.48□□□□□ -0.09
LIMS1-207ENST00000422797 NEURL4Q96JN8 1562 aa14.48□□□□□ -0.09
LIMS1-207ENST00000422797 PIK3C2GO75747 1445 aa14.47□□□□□ -0.09
LIMS1-207ENST00000422797 IQGAP1P46940 1657 aa14.47□□□□□ -0.09
LIMS1-207ENST00000422797 CENPQQ7L2Z9 268 aaPredicted RBP14.46□□□□□ -0.09
LIMS1-207ENST00000422797 TTC37Q6PGP7 1564 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms