RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 DCAF11Q8TEB1 546 aa11.63□□□□□ -0.55
USP54-203ENST00000418501 GLI2P10070 1586 aa11.63□□□□□ -0.55
USP54-203ENST00000418501 A2MP01023 1474 aa11.63□□□□□ -0.55
USP54-203ENST00000418501 MLH3Q9UHC1 1453 aa11.63□□□□□ -0.55
USP54-203ENST00000418501 CARD11Q9BXL7 1154 aa11.62□□□□□ -0.55
USP54-203ENST00000418501 SCAF1Q9H7N4 1312 aaKnown RBP11.62□□□□□ -0.55
USP54-203ENST00000418501 KDM2AQ9Y2K7 1162 aa11.62□□□□□ -0.55
USP54-203ENST00000418501 WASHC2CQ9Y4E1 1318 aa11.62□□□□□ -0.55
USP54-203ENST00000418501 UNC13BO14795 1591 aa11.61□□□□□ -0.55
USP54-203ENST00000418501 MYT1Q01538 1121 aa11.61□□□□□ -0.55
USP54-203ENST00000418501 CDCA8Q53HL2 280 aa11.61□□□□□ -0.55
USP54-203ENST00000418501 ZFYVE16Q7Z3T8 1539 aa11.61□□□□□ -0.55
USP54-203ENST00000418501 RIMBP3CA6NJZ7 1639 aa11.6□□□□□ -0.55
USP54-203ENST00000418501 RIMBP3BA6NNM3 1639 aa11.6□□□□□ -0.55
USP54-203ENST00000418501 KDM6BO15054 1643 aa11.6□□□□□ -0.55
USP54-203ENST00000418501 RIMBP3Q9UFD9 1639 aa11.6□□□□□ -0.55
USP54-203ENST00000418501 HSPA5P11021 654 aaKnown RBP11.6□□□□□ -0.55
USP54-203ENST00000418501 DDX10Q13206 875 aaKnown RBP11.6□□□□□ -0.55
USP54-203ENST00000418501 GGT6Q6P531 493 aa11.6□□□□□ -0.55
USP54-203ENST00000418501 ROCK2O75116 1388 aaKnown RBP11.6□□□□□ -0.55
USP54-203ENST00000418501 EIF2AK4Q9P2K8 1649 aaKnown RBP11.59□□□□□ -0.55
USP54-203ENST00000418501 MAGI2Q86UL8 1455 aa11.59□□□□□ -0.55
USP54-203ENST00000418501 RGL3Q3MIN7 710 aa11.58□□□□□ -0.55
USP54-203ENST00000418501 IQGAP3Q86VI3 1631 aa11.58□□□□□ -0.56
USP54-203ENST00000418501 EIF3AQ14152 1382 aaKnown RBP11.57□□□□□ -0.56
USP54-203ENST00000418501 HECW2Q9P2P5 1572 aa11.56□□□□□ -0.56
USP54-203ENST00000418501 CHGAP10645 457 aaKnown RBP11.56□□□□□ -0.56
USP54-203ENST00000418501 ATP10AO60312 1499 aa11.56□□□□□ -0.56
USP54-203ENST00000418501 INO80Q9ULG1 1556 aaPredicted RBP11.56□□□□□ -0.56
USP54-203ENST00000418501 STAG3Q9UJ98 1225 aa11.56□□□□□ -0.56
USP54-203ENST00000418501 RPGRIP1LQ68CZ1 1315 aa11.55□□□□□ -0.56
USP54-203ENST00000418501 CCER2I3L3R5 266 aa11.55□□□□□ -0.56
USP54-203ENST00000418501 HDGFP51858 240 aaKnown RBP11.55□□□□□ -0.56
USP54-203ENST00000418501 POLR3GLQ9BT43 218 aa11.55□□□□□ -0.56
USP54-203ENST00000418501 UHRF1BP1Q6BDS2 1440 aa11.55□□□□□ -0.56
USP54-203ENST00000418501 MIER1Q8N108 512 aa11.55□□□□□ -0.56
USP54-203ENST00000418501 USP47Q96K76 1375 aa11.53□□□□□ -0.56
USP54-203ENST00000418501 RAPGEF3O95398 923 aa11.53□□□□□ -0.56
USP54-203ENST00000418501 SLC52A1Q9NWF4 448 aa11.52□□□□□ -0.56
USP54-203ENST00000418501 KDM5CP41229 1560 aa11.52□□□□□ -0.57
USP54-203ENST00000418501 RALGAPBQ86X10 1494 aa11.52□□□□□ -0.57
USP54-203ENST00000418501 TMF1P82094 1093 aa11.52□□□□□ -0.57
USP54-203ENST00000418501 TET3O43151 1660 aa11.51□□□□□ -0.57
USP54-203ENST00000418501 YTHDC1Q96MU7 727 aaKnown RBP11.5□□□□□ -0.57
USP54-203ENST00000418501 CNTLNQ9NXG0 1405 aa11.5□□□□□ -0.57
USP54-203ENST00000418501 VGFO15240 615 aaPredicted RBP11.5□□□□□ -0.57
USP54-203ENST00000418501 LMTK2Q8IWU2 1503 aa11.49□□□□□ -0.57
USP54-203ENST00000418501 PRDM15P57071 1507 aaPredicted RBP11.49□□□□□ -0.57
USP54-203ENST00000418501 MAP3K4Q9Y6R4 1608 aa11.49□□□□□ -0.57
USP54-203ENST00000418501 TRPM2O94759 1503 aa11.49□□□□□ -0.57
USP54-203ENST00000418501 NBPF8Q3BBV2 869 aa11.49□□□□□ -0.57
USP54-203ENST00000418501 PTPRTO14522 1441 aa11.48□□□□□ -0.57
USP54-203ENST00000418501 TRHP20396 242 aaPredicted RBP11.48□□□□□ -0.57
USP54-203ENST00000418501 CCDC7Q96M83 1385 aa11.48□□□□□ -0.57
USP54-203ENST00000418501 HIRIP3Q9BW71 556 aaPredicted RBP11.47□□□□□ -0.57
USP54-203ENST00000418501 DIP2BQ9P265 1576 aa11.47□□□□□ -0.57
USP54-203ENST00000418501 DEPDC5O75140 1603 aa11.45□□□□□ -0.58
USP54-203ENST00000418501 PRAG1Q86YV5 1406 aa11.45□□□□□ -0.58
USP54-203ENST00000418501 KTN1Q86UP2 1357 aaKnown RBP11.44□□□□□ -0.58
USP54-203ENST00000418501 ZMYM4Q5VZL5 1548 aa11.44□□□□□ -0.58
USP54-203ENST00000418501 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.44□□□□□ -0.58
USP54-203ENST00000418501 RNF17Q9BXT8 1623 aaKnown RBP11.44□□□□□ -0.58
USP54-203ENST00000418501 ARHGAP31Q2M1Z3 1444 aa11.44□□□□□ -0.58
USP54-203ENST00000418501 EFCAB6Q5THR3 1501 aa11.43□□□□□ -0.58
USP54-203ENST00000418501 KIDINS220Q9ULH0 1771 aa11.43□□□□□ -0.58
USP54-203ENST00000418501 NEURL4Q96JN8 1562 aa11.43□□□□□ -0.58
USP54-203ENST00000418501 VWDEQ8N2E2 1590 aa11.42□□□□□ -0.58
USP54-203ENST00000418501 ST20-MTHFSA0A0A6YYL1 179 aa11.42□□□□□ -0.58
USP54-203ENST00000418501 GPRASP1Q5JY77 1395 aa11.41□□□□□ -0.58
USP54-203ENST00000418501 RALBP1Q15311 655 aa11.41□□□□□ -0.58
USP54-203ENST00000418501 ZC3H13Q5T200 1668 aaKnown RBP11.41□□□□□ -0.58
USP54-203ENST00000418501 AGLP35573 1532 aa11.41□□□□□ -0.58
USP54-203ENST00000418501 NEFLP07196 543 aa11.41□□□□□ -0.58
USP54-203ENST00000418501 KIF7Q2M1P5 1343 aa11.4□□□□□ -0.58
USP54-203ENST00000418501 WASHC2AQ641Q2 1341 aa11.4□□□□□ -0.58
USP54-203ENST00000418501 DIP2CQ9Y2E4 1556 aa11.4□□□□□ -0.58
USP54-203ENST00000418501 SPATA31E1Q6ZUB1 1445 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 PLA2R1Q13018 1463 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 SPHKAPQ2M3C7 1700 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 ABCC3O15438 1527 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 MLECQ14165 292 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 MYOM2P54296 1465 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 BCORL1Q5H9F3 1711 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 REREQ9P2R6 1566 aa11.39□□□□□ -0.59
USP54-203ENST00000418501 SCAF11Q99590 1463 aaKnown RBP11.38□□□□□ -0.59
USP54-203ENST00000418501 KNSTRNQ9Y448 316 aa11.38□□□□□ -0.59
USP54-203ENST00000418501 BCANQ96GW7 911 aa11.37□□□□□ -0.59
USP54-203ENST00000418501 ABCA6Q8N139 1617 aa11.37□□□□□ -0.59
USP54-203ENST00000418501 E9PCH4 1651 aa11.37□□□□□ -0.59
USP54-203ENST00000418501 NPATQ14207 1427 aa11.37□□□□□ -0.59
USP54-203ENST00000418501 YEATS2Q9ULM3 1422 aa11.37□□□□□ -0.59
USP54-203ENST00000418501 MRS2Q9HD23 443 aa11.37□□□□□ -0.59
USP54-203ENST00000418501 TMC1Q8TDI8 760 aa11.36□□□□□ -0.59
USP54-203ENST00000418501 LAMC1P11047 1609 aa11.36□□□□□ -0.59
USP54-203ENST00000418501 RICTORQ6R327 1708 aa11.35□□□□□ -0.59
USP54-203ENST00000418501 KIF1BO60333 1816 aa11.35□□□□□ -0.59
USP54-203ENST00000418501 NOS1P29475 1434 aa11.34□□□□□ -0.59
USP54-203ENST00000418501 EID1Q9Y6B2 187 aa11.34□□□□□ -0.59
USP54-203ENST00000418501 CENPJQ9HC77 1338 aaPredicted RBP11.34□□□□□ -0.59
USP54-203ENST00000418501 POGKQ9P215 609 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms