RNA–Protein interactions for RNA: ENST00000414981.2

HMGB3P23-201, Transcript of high mobility group box 3 pseudogene 23, humanhuman

BASIC

Gene HMGB3P23, Length 585 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P23-201ENST00000414981 ANKRD13DQ6ZTN6 518 aa9.31□□□□□ -0.92
HMGB3P23-201ENST00000414981 SPNS2Q8IVW8 549 aa9.31□□□□□ -0.92
HMGB3P23-201ENST00000414981 KCNK17Q96T54 332 aa9.31□□□□□ -0.92
HMGB3P23-201ENST00000414981 EN1Q05925 392 aaPredicted RBP9.3□□□□□ -0.92
HMGB3P23-201ENST00000414981 SEMA3EO15041 775 aa9.29□□□□□ -0.92
HMGB3P23-201ENST00000414981 MLLT3P42568 568 aaPredicted RBP9.29□□□□□ -0.92
HMGB3P23-201ENST00000414981 DMRTA1Q5VZB9 504 aa9.29□□□□□ -0.92
HMGB3P23-201ENST00000414981 RBM33Q96EV2 1170 aaKnown RBP9.29□□□□□ -0.92
HMGB3P23-201ENST00000414981 TESPA1A2RU30 521 aaPredicted RBP9.27□□□□□ -0.93
HMGB3P23-201ENST00000414981 PPP1R3GB7ZBB8 358 aa9.27□□□□□ -0.93
HMGB3P23-201ENST00000414981 SMYD5Q6GMV2 418 aa9.27□□□□□ -0.93
HMGB3P23-201ENST00000414981 ADGRD1Q6QNK2 874 aa9.27□□□□□ -0.93
HMGB3P23-201ENST00000414981 MAP3K7O43318 606 aa9.26□□□□□ -0.93
HMGB3P23-201ENST00000414981 ZBED2Q9BTP6 218 aa9.26□□□□□ -0.93
HMGB3P23-201ENST00000414981 ONECUT3O60422 494 aaPredicted RBP9.25□□□□□ -0.93
HMGB3P23-201ENST00000414981 COL9A1P20849 921 aa9.25□□□□□ -0.93
HMGB3P23-201ENST00000414981 PRIM1P49642 420 aaKnown RBP9.25□□□□□ -0.93
HMGB3P23-201ENST00000414981 VPS9D1Q9Y2B5 631 aa9.25□□□□□ -0.93
HMGB3P23-201ENST00000414981 SLC24A1O60721 1099 aa9.24□□□□□ -0.93
HMGB3P23-201ENST00000414981 CERKQ8TCT0 537 aa9.24□□□□□ -0.93
HMGB3P23-201ENST00000414981 HRO43593 1189 aa9.23□□□□□ -0.93
HMGB3P23-201ENST00000414981 TSR1Q2NL82 804 aaKnown RBP9.23□□□□□ -0.93
HMGB3P23-201ENST00000414981 PLSCR2Q9NRY7 297 aa9.23□□□□□ -0.93
HMGB3P23-201ENST00000414981 MMRN1Q13201 1228 aa9.21□□□□□ -0.94
HMGB3P23-201ENST00000414981 BHMG1C9JSJ3 638 aaPredicted RBP9.2□□□□□ -0.94
HMGB3P23-201ENST00000414981 STAC3Q96MF2 364 aa9.19□□□□□ -0.94
HMGB3P23-201ENST00000414981 NPDC1Q9NQX5 325 aaPredicted RBP9.19□□□□□ -0.94
HMGB3P23-201ENST00000414981 RABGEF1Q9UJ41 708 aa9.19□□□□□ -0.94
HMGB3P23-201ENST00000414981 MYT1LQ9UL68 1186 aa9.18□□□□□ -0.94
HMGB3P23-201ENST00000414981 TRIM6-TRIM34B2RNG4 842 aa9.17□□□□□ -0.94
HMGB3P23-201ENST00000414981 PRSS12P56730 875 aa9.17□□□□□ -0.94
HMGB3P23-201ENST00000414981 PROX2Q3B8N5 592 aa9.17□□□□□ -0.94
HMGB3P23-201ENST00000414981 CDCA7LQ96GN5 454 aa9.16□□□□□ -0.94
HMGB3P23-201ENST00000414981 KIAA1468Q9P260 1216 aa9.16□□□□□ -0.94
HMGB3P23-201ENST00000414981 RBM27Q9P2N5 1060 aaKnown RBP9.16□□□□□ -0.94
HMGB3P23-201ENST00000414981 TULP1O00294 542 aaPredicted RBP9.15□□□□□ -0.94
HMGB3P23-201ENST00000414981 PACS2Q86VP3 889 aa9.15□□□□□ -0.94
HMGB3P23-201ENST00000414981 CDHR5Q9HBB8 845 aa9.15□□□□□ -0.94
HMGB3P23-201ENST00000414981 PTGDRQ13258 359 aa9.14□□□□□ -0.95
HMGB3P23-201ENST00000414981 NBPF3Q9H094 633 aa9.14□□□□□ -0.95
HMGB3P23-201ENST00000414981 NUTM2FA1L443 756 aa9.13□□□□□ -0.95
HMGB3P23-201ENST00000414981 RBM26Q5T8P6 1007 aaKnown RBP9.13□□□□□ -0.95
HMGB3P23-201ENST00000414981 LAPTM4BQ86VI4 370 aa9.13□□□□□ -0.95
HMGB3P23-201ENST00000414981 TSKSQ9UJT2 592 aa9.13□□□□□ -0.95
HMGB3P23-201ENST00000414981 FCHSD2O94868 740 aa9.12□□□□□ -0.95
HMGB3P23-201ENST00000414981 MRPL50Q8N5N7 158 aaKnown RBP9.12□□□□□ -0.95
HMGB3P23-201ENST00000414981 TTC13Q8NBP0 860 aa9.12□□□□□ -0.95
HMGB3P23-201ENST00000414981 RNF166Q96A37 237 aaPredicted RBP9.12□□□□□ -0.95
HMGB3P23-201ENST00000414981 FAM198AQ9UFP1 575 aa9.1□□□□□ -0.95
HMGB3P23-201ENST00000414981 GOLGA8CPA6NN73 597 aa9.09□□□□□ -0.95
HMGB3P23-201ENST00000414981 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.09□□□□□ -0.95
HMGB3P23-201ENST00000414981 HIC1Q14526 733 aa9.08□□□□□ -0.96
HMGB3P23-201ENST00000414981 TATDN2Q93075 761 aa9.07□□□□□ -0.96
HMGB3P23-201ENST00000414981 NBPF26B4DH59 902 aa9.06□□□□□ -0.96
HMGB3P23-201ENST00000414981 FAM98CQ17RN3 349 aaKnown RBP9.06□□□□□ -0.96
HMGB3P23-201ENST00000414981 PADI6Q6TGC4 694 aa9.06□□□□□ -0.96
HMGB3P23-201ENST00000414981 GPIHBP1Q8IV16 184 aa9.05□□□□□ -0.96
HMGB3P23-201ENST00000414981 PNMA3Q9UL41 463 aa9.05□□□□□ -0.96
HMGB3P23-201ENST00000414981 GNPATO15228 680 aa9.04□□□□□ -0.96
HMGB3P23-201ENST00000414981 NUDT18Q6ZVK8 323 aa9.04□□□□□ -0.96
HMGB3P23-201ENST00000414981 KCTD12Q96CX2 325 aaKnown RBP9.04□□□□□ -0.96
HMGB3P23-201ENST00000414981 ZFRQ96KR1 1074 aaKnown RBP9.04□□□□□ -0.96
HMGB3P23-201ENST00000414981 SEPT9Q9UHD8 586 aaPredicted RBP9.04□□□□□ -0.96
HMGB3P23-201ENST00000414981 GPR37O15354 613 aa9.03□□□□□ -0.96
HMGB3P23-201ENST00000414981 WNT2BQ93097 391 aa9.03□□□□□ -0.96
HMGB3P23-201ENST00000414981 EYA1Q99502 592 aa9.03□□□□□ -0.96
HMGB3P23-201ENST00000414981 HCSTQ9UBK5 93 aa9.03□□□□□ -0.96
HMGB3P23-201ENST00000414981 C3orf80F5H4A9 247 aa9.02□□□□□ -0.97
HMGB3P23-201ENST00000414981 SMAPO00193 183 aa9.01□□□□□ -0.97
HMGB3P23-201ENST00000414981 ANKK1Q8NFD2 765 aa9.01□□□□□ -0.97
HMGB3P23-201ENST00000414981 OATP04181 439 aa9□□□□□ -0.97
HMGB3P23-201ENST00000414981 HDGFP51858 240 aaKnown RBP9□□□□□ -0.97
HMGB3P23-201ENST00000414981 LMOD2Q6P5Q4 547 aa9□□□□□ -0.97
HMGB3P23-201ENST00000414981 THSD4Q6ZMP0 1018 aa9□□□□□ -0.97
HMGB3P23-201ENST00000414981 ADGRG1Q9Y653 693 aa9□□□□□ -0.97
HMGB3P23-201ENST00000414981 SOWAHBA6NEL2 793 aa8.99□□□□□ -0.97
HMGB3P23-201ENST00000414981 RBM46Q8TBY0 533 aaKnown RBP8.99□□□□□ -0.97
HMGB3P23-201ENST00000414981 BCANQ96GW7 911 aa8.99□□□□□ -0.97
HMGB3P23-201ENST00000414981 FECHP22830 423 aa8.97□□□□□ -0.97
HMGB3P23-201ENST00000414981 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.97□□□□□ -0.97
HMGB3P23-201ENST00000414981 LRCH3Q96II8 777 aa8.96□□□□□ -0.98
HMGB3P23-201ENST00000414981 PTPN5P54829 565 aa8.95□□□□□ -0.98
HMGB3P23-201ENST00000414981 SAMD7Q7Z3H4 446 aa8.95□□□□□ -0.98
HMGB3P23-201ENST00000414981 DNAJB2P25686 324 aa8.94□□□□□ -0.98
HMGB3P23-201ENST00000414981 PXYLP1Q8TE99 480 aa8.94□□□□□ -0.98
HMGB3P23-201ENST00000414981 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 BCAMP50895 628 aa8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 MAP2K5Q13163 448 aa8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 FAM161AQ3B820 660 aa8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 NYAP1Q6ZVC0 841 aa8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 TSR3Q9UJK0 312 aaKnown RBP8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 MINK1Q8N4C8 1332 aaPredicted RBP8.93□□□□□ -0.98
HMGB3P23-201ENST00000414981 RCCD1A6NED2 376 aa8.92□□□□□ -0.98
HMGB3P23-201ENST00000414981 IRF6O14896 467 aa8.92□□□□□ -0.98
HMGB3P23-201ENST00000414981 METTL3Q86U44 580 aaKnown RBP8.92□□□□□ -0.98
HMGB3P23-201ENST00000414981 ZC3H15Q8WU90 426 aaKnown RBP8.92□□□□□ -0.98
HMGB3P23-201ENST00000414981 ZMYND10O75800 440 aa8.91□□□□□ -0.98
HMGB3P23-201ENST00000414981 PPP4CP60510 307 aa8.91□□□□□ -0.98
HMGB3P23-201ENST00000414981 SWT1Q5T5J6 900 aaKnown RBP8.91□□□□□ -0.98
HMGB3P23-201ENST00000414981 TMEM134Q9H6X4 195 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms